HG10022471 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10022471
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	proline-rich proteoglycan 2-like
Location	Chr05: 24691728 .. 24692306 (-)
RNA-Seq Expression	HG10022471
Synteny	HG10022471

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGCATGTTTTCTTCTTCTTTTTGCTTCTTGCTATGGTATCAAATATAAAAAGTGTGGAGGCAAAGAGAGATGAAAGTAGTGATCAACTTATTTTGAGTCTCAAAAGTCTTGTTCCCGGAGGGCCAAATCAAGCTTTTCCTCCCGAAACTCCACCTCACAATAATAAATTTACTTTGGATCTCAAGCACCTTGTTCCCGAAGGGCCAAATCAAGCGTACCCACCTGGAGTTCCTCCTCACAGTATTGTTACGAACTCAAAAGCAAAAAATGGTATTGGCGAGCTTACTTTGGGTCCCAAGAGACTTGTTCCAGGAGGGCCAAATCAAGCTTTCCCTCCCGAAACTCCACCTCACAATAGTAAATTTACTTTGGGTCTCAAGTATCTTGTTCCCGAAGGGCCAAATCAAGCGTACCCTCCTGGAGTTCCTCCTCACAATATTGTTACGAATTCAAAAGCAAAAAATGGTATTGGTGAGCTTACTTTAGGTTCCAAGAGACTTGTTCCAGGCGGGCCAAATCAAGCATTTCCCCCTGAAACTCCTCCTCACAGCATTGTTACCAAGTTAATACCTTGA

mRNA sequence

ATGTTGCATGTTTTCTTCTTCTTTTTGCTTCTTGCTATGGTATCAAATATAAAAAGTGTGGAGGCAAAGAGAGATGAAAGTAGTGATCAACTTATTTTGAGTCTCAAAAGTCTTGTTCCCGGAGGGCCAAATCAAGCTTTTCCTCCCGAAACTCCACCTCACAATAATAAATTTACTTTGGATCTCAAGCACCTTGTTCCCGAAGGGCCAAATCAAGCGTACCCACCTGGAGTTCCTCCTCACAGTATTGTTACGAACTCAAAAGCAAAAAATGGTATTGGCGAGCTTACTTTGGGTCCCAAGAGACTTGTTCCAGGAGGGCCAAATCAAGCTTTCCCTCCCGAAACTCCACCTCACAATAGTAAATTTACTTTGGGTCTCAAGTATCTTGTTCCCGAAGGGCCAAATCAAGCGTACCCTCCTGGAGTTCCTCCTCACAATATTGTTACGAATTCAAAAGCAAAAAATGGTATTGGTGAGCTTACTTTAGGTTCCAAGAGACTTGTTCCAGGCGGGCCAAATCAAGCATTTCCCCCTGAAACTCCTCCTCACAGCATTGTTACCAAGTTAATACCTTGA

Coding sequence (CDS)

ATGTTGCATGTTTTCTTCTTCTTTTTGCTTCTTGCTATGGTATCAAATATAAAAAGTGTGGAGGCAAAGAGAGATGAAAGTAGTGATCAACTTATTTTGAGTCTCAAAAGTCTTGTTCCCGGAGGGCCAAATCAAGCTTTTCCTCCCGAAACTCCACCTCACAATAATAAATTTACTTTGGATCTCAAGCACCTTGTTCCCGAAGGGCCAAATCAAGCGTACCCACCTGGAGTTCCTCCTCACAGTATTGTTACGAACTCAAAAGCAAAAAATGGTATTGGCGAGCTTACTTTGGGTCCCAAGAGACTTGTTCCAGGAGGGCCAAATCAAGCTTTCCCTCCCGAAACTCCACCTCACAATAGTAAATTTACTTTGGGTCTCAAGTATCTTGTTCCCGAAGGGCCAAATCAAGCGTACCCTCCTGGAGTTCCTCCTCACAATATTGTTACGAATTCAAAAGCAAAAAATGGTATTGGTGAGCTTACTTTAGGTTCCAAGAGACTTGTTCCAGGCGGGCCAAATCAAGCATTTCCCCCTGAAACTCCTCCTCACAGCATTGTTACCAAGTTAATACCTTGA

Protein sequence

MLHVFFFFLLLAMVSNIKSVEAKRDESSDQLILSLKSLVPGGPNQAFPPETPPHNNKFTLDLKHLVPEGPNQAYPPGVPPHSIVTNSKAKNGIGELTLGPKRLVPGGPNQAFPPETPPHNSKFTLGLKYLVPEGPNQAYPPGVPPHNIVTNSKAKNGIGELTLGSKRLVPGGPNQAFPPETPPHSIVTKLIP

Homology

[Close]

BLAST of HG10022471 vs. NCBI nr
Match: XP_022932063.1 (uncharacterized protein LOC111438388 [Cucurbita moschata])

HSP 1 Score: 156.8 bits (395), Expect = 1.9e-34
Identity = 88/169 (52.07%), Postives = 105/169 (62.13%), Query Frame = 0


Query: 33  LSLKSLVPGGPNQAFPPETPPHNNKFTLDLKHLVPEGPNQAYPPGVPPHSIVTNSKAKNG 92
           L  K LVP GPNQ FPPETP HN    L  K LVP+GPNQ +PP  P H++ +     +G
Sbjct: 681 LGSKRLVPDGPNQMFPPETPLHN----LGSKRLVPDGPNQMFPPETPLHNLGSKRLVPDG 740

Query: 93  IGEL--------TLGPKRLVPGGPNQAFPPETPPHNSKFTLGLKYLVPEGPNQAYPPGVP 152
             ++         LG KRLVP GPNQ FPPETP HN    LG K LVP+GPNQ +PP  P
Sbjct: 741 PNQMFPPETPLHNLGSKRLVPDGPNQMFPPETPLHN----LGSKRLVPDGPNQMFPPETP 800

Query: 153 PHNIVTNSKAKNGIGELTLGSKRLVPGGPNQAFPPETPPHSIVTK-LIP 193
            HN+ +     +G     LGSKRLVPGGPNQ F PETP H++ +K L+P
Sbjct: 801 LHNLGSKRLVPDG---PNLGSKRLVPGGPNQMFSPETPLHNLGSKRLVP 838

[Close]

BLAST of HG10022471 vs. NCBI nr
Match: XP_022159163.1 (proline-rich proteoglycan 2-like [Momordica charantia])

HSP 1 Score: 117.9 bits (294), Expect = 9.9e-23
Identity = 81/194 (41.75%), Postives = 92/194 (47.42%), Query Frame = 0


Query: 4   VFFFFLLLAMVSNIKSVEAKRDESSDQLILSLKSLVPGGPNQAFPPETPPHNNKFTLDLK 63
           VF F   +A++S+  +VEA+RD + D L L LK  VP GPN A  PE PP    FTL LK
Sbjct: 12  VFLFLSFVAILSDANTVEARRDANGDVLALDLKRRVPMGPNPATSPERPP----FTLGLK 71

Query: 64  HLVPEGPNQAYPPGVPPHSIVTNSKAKNGIGELTLGPKRLVPGGPNQAFPPETPPHNSKF 123
             VP  PN    P  PP               LTLG KR VP GPN A  PE+PP    F
Sbjct: 72  RHVPTDPNPTTSPDRPP---------------LTLGLKRRVPTGPNPATSPESPP----F 131

Query: 124 TLGLKYLVPEGPNQAYPPGVPPHNIVTNSKAKNGIG--------ELTLGSKRLVPGGPNQ 183
             GLK  VP GPN A  P  PP       +   G            T   KR VP GPN 
Sbjct: 132 IFGLKRRVPTGPNPATSPERPPFTFSLKRRVPTGPNPATSPERLPFTFSLKRRVPTGPNP 182

Query: 184 AFPPETPPHSIVTK 190
           A  PE PP ++  K
Sbjct: 192 ATSPERPPFTLGLK 182

[Close]

BLAST of HG10022471 vs. NCBI nr
Match: VDC94000.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 111.7 bits (278), Expect = 7.1e-21
Identity = 70/162 (43.21%), Postives = 81/162 (50.00%), Query Frame = 0


Query: 35  LKSLVPGGPNQAFPPETPPHNNKFTLDLKHLVPEGPNQAYPPGVPPHSIVTNSKAKNGIG 94
           +K LVP GPN    P + PH+      +K LVP GPN    P  PPHSIV          
Sbjct: 230 VKRLVPSGPNNETSPSSSPHSIA-DFGVKRLVPSGPNNETSPPSPPHSIV---------- 289

Query: 95  ELTLGPKRLVPGGPNQAFPPETPPHNSKFTLGLKYLVPEGPNQAYPPGVPPHNIVTNSKA 154
               G KRLVP GPN    P +PPH      G+K LVP GPN    P  PPH I     A
Sbjct: 290 --DFGVKRLVPSGPNNETSPPSPPHPIA-DFGVKRLVPSGPNNETSPPSPPHPI-----A 349

Query: 155 KNGIGELTLGSKRLVPGGPNQAFPPETPPHSI----VTKLIP 193
             G+  L +G KRLVP GPN    P +PPH I    V +L+P
Sbjct: 350 DFGVKRLNIGVKRLVPSGPNNETSPPSPPHFIADFGVKRLVP 372

[Close]

BLAST of HG10022471 vs. NCBI nr
Match: KAG2315933.1 (hypothetical protein Bca52824_019055 [Brassica carinata])

HSP 1 Score: 110.2 bits (274), Expect = 2.1e-20
Identity = 72/176 (40.91%), Postives = 85/176 (48.30%), Query Frame = 0


Query: 35  LKSLVPGGPNQAFPPETPPHNNKFTLDLKHLVPEGPNQAYPPGVPPHSIVTNSKAKNGIG 94
           LK LVP GPN    P +PPH+ +  + +K LVP GPN    P  PPHSI           
Sbjct: 138 LKRLVPSGPNNETSPPSPPHSME-DIRVKRLVPSGPNNETSPPSPPHSIA---------- 197

Query: 95  ELTLGPKRLVPGGPNQAFPPETPPHNSKFTLGLKYLVPEGPNQAYPPGVPPHNIV---TN 154
               G KRLVP GPN    P +PPH+  F  G+K LVP GPN    P  PPH I      
Sbjct: 198 --EFGLKRLVPSGPNNETSPPSPPHSIAF-FGMKRLVPSGPNNETSPPSPPHFIADFGLK 257

Query: 155 SKAKNGIGELT-----------LGSKRLVPGGPNQAFPPETPPHSI----VTKLIP 193
               +G    T           +G KRLVP GPN    P +PPHSI    V +L+P
Sbjct: 258 RLVPSGPNNETSPPSPPHSMEDIGVKRLVPSGPNNETSPPSPPHSIADFGVKRLVP 299

[Close]

BLAST of HG10022471 vs. NCBI nr
Match: XP_033143265.1 (leucine-rich repeat extensin-like protein 5 [Brassica rapa])

HSP 1 Score: 110.2 bits (274), Expect = 2.1e-20
Identity = 69/162 (42.59%), Postives = 80/162 (49.38%), Query Frame = 0


Query: 35  LKSLVPGGPNQAFPPETPPHNNKFTLDLKHLVPEGPNQAYPPGVPPHSIVTNSKAKNGIG 94
           +K LVP GPN    P +PPH+  F   +K LVP GPN    P  PPHSI           
Sbjct: 79  VKRLVPSGPNNETSPPSPPHSADF--GVKRLVPSGPNNETSPPSPPHSIA---------- 138

Query: 95  ELTLGPKRLVPGGPNQAFPPETPPHNSKFTLGLKYLVPEGPNQAYPPGVPPHNIVTNSKA 154
               G KRLVP GPN    P +PPH S  + G+K LVP GPN    P  PPH+I      
Sbjct: 139 --DYGVKRLVPSGPNNETSPPSPPH-SIASFGVKRLVPSGPNNETSPPSPPHSIA----- 198

Query: 155 KNGIGELTLGSKRLVPGGPNQAFPPETPPHSI----VTKLIP 193
                    G K LVP GPN    P +PPHSI    V +L+P
Sbjct: 199 -------DFGVKGLVPSGPNNETSPPSPPHSIADFGVKRLVP 213

[Close]

BLAST of HG10022471 vs. ExPASy TrEMBL
Match: A0A6J1F0K6 (uncharacterized protein LOC111438388 OS=Cucurbita moschata OX=3662 GN=LOC111438388 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 9.3e-35
Identity = 88/169 (52.07%), Postives = 105/169 (62.13%), Query Frame = 0


Query: 33  LSLKSLVPGGPNQAFPPETPPHNNKFTLDLKHLVPEGPNQAYPPGVPPHSIVTNSKAKNG 92
           L  K LVP GPNQ FPPETP HN    L  K LVP+GPNQ +PP  P H++ +     +G
Sbjct: 681 LGSKRLVPDGPNQMFPPETPLHN----LGSKRLVPDGPNQMFPPETPLHNLGSKRLVPDG 740

Query: 93  IGEL--------TLGPKRLVPGGPNQAFPPETPPHNSKFTLGLKYLVPEGPNQAYPPGVP 152
             ++         LG KRLVP GPNQ FPPETP HN    LG K LVP+GPNQ +PP  P
Sbjct: 741 PNQMFPPETPLHNLGSKRLVPDGPNQMFPPETPLHN----LGSKRLVPDGPNQMFPPETP 800

Query: 153 PHNIVTNSKAKNGIGELTLGSKRLVPGGPNQAFPPETPPHSIVTK-LIP 193
            HN+ +     +G     LGSKRLVPGGPNQ F PETP H++ +K L+P
Sbjct: 801 LHNLGSKRLVPDG---PNLGSKRLVPGGPNQMFSPETPLHNLGSKRLVP 838

[Close]

BLAST of HG10022471 vs. ExPASy TrEMBL
Match: A0A6J1DY20 (proline-rich proteoglycan 2-like OS=Momordica charantia OX=3673 GN=LOC111025587 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 4.8e-23
Identity = 81/194 (41.75%), Postives = 92/194 (47.42%), Query Frame = 0


Query: 4   VFFFFLLLAMVSNIKSVEAKRDESSDQLILSLKSLVPGGPNQAFPPETPPHNNKFTLDLK 63
           VF F   +A++S+  +VEA+RD + D L L LK  VP GPN A  PE PP    FTL LK
Sbjct: 12  VFLFLSFVAILSDANTVEARRDANGDVLALDLKRRVPMGPNPATSPERPP----FTLGLK 71

Query: 64  HLVPEGPNQAYPPGVPPHSIVTNSKAKNGIGELTLGPKRLVPGGPNQAFPPETPPHNSKF 123
             VP  PN    P  PP               LTLG KR VP GPN A  PE+PP    F
Sbjct: 72  RHVPTDPNPTTSPDRPP---------------LTLGLKRRVPTGPNPATSPESPP----F 131

Query: 124 TLGLKYLVPEGPNQAYPPGVPPHNIVTNSKAKNGIG--------ELTLGSKRLVPGGPNQ 183
             GLK  VP GPN A  P  PP       +   G            T   KR VP GPN 
Sbjct: 132 IFGLKRRVPTGPNPATSPERPPFTFSLKRRVPTGPNPATSPERLPFTFSLKRRVPTGPNP 182

Query: 184 AFPPETPPHSIVTK 190
           A  PE PP ++  K
Sbjct: 192 ATSPERPPFTLGLK 182

[Close]

BLAST of HG10022471 vs. ExPASy TrEMBL
Match: A0A3P6B7Y9 (Uncharacterized protein OS=Brassica oleracea OX=3712 GN=BOLC3T17342H PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 3.4e-21
Identity = 70/162 (43.21%), Postives = 81/162 (50.00%), Query Frame = 0


Query: 35  LKSLVPGGPNQAFPPETPPHNNKFTLDLKHLVPEGPNQAYPPGVPPHSIVTNSKAKNGIG 94
           +K LVP GPN    P + PH+      +K LVP GPN    P  PPHSIV          
Sbjct: 230 VKRLVPSGPNNETSPSSSPHSIA-DFGVKRLVPSGPNNETSPPSPPHSIV---------- 289

Query: 95  ELTLGPKRLVPGGPNQAFPPETPPHNSKFTLGLKYLVPEGPNQAYPPGVPPHNIVTNSKA 154
               G KRLVP GPN    P +PPH      G+K LVP GPN    P  PPH I     A
Sbjct: 290 --DFGVKRLVPSGPNNETSPPSPPHPIA-DFGVKRLVPSGPNNETSPPSPPHPI-----A 349

Query: 155 KNGIGELTLGSKRLVPGGPNQAFPPETPPHSI----VTKLIP 193
             G+  L +G KRLVP GPN    P +PPH I    V +L+P
Sbjct: 350 DFGVKRLNIGVKRLVPSGPNNETSPPSPPHFIADFGVKRLVP 372

[Close]

BLAST of HG10022471 vs. ExPASy TrEMBL
Match: M4D9I0 (Uncharacterized protein OS=Brassica rapa subsp. pekinensis OX=51351 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 4.5e-21
Identity = 68/165 (41.21%), Postives = 83/165 (50.30%), Query Frame = 0


Query: 33  LSLKSLVPGGPNQAFPPETPPHNNKFTLDLKHLVPEGPNQAYPPGVPPHSIVTNSKAKNG 92
           + +K LVP GPN    P +PPH  +  + +K LVP GPN    P  PPH I   +   + 
Sbjct: 25  IGVKRLVPSGPNNETSPPSPPHFIE-DIGVKRLVPSGPNNETSPPSPPHFIEDETSPPSP 84

Query: 93  IGEL-TLGPKRLVPGGPNQAFPPETPPHNSKFTLGLKYLVPEGPNQAYPPGVPPHNIVTN 152
              +   G KRLVP GPN    P +PPH S    G+K LVP GPN    P  PPH+I   
Sbjct: 85  PHSIANFGVKRLVPSGPNNETSPPSPPH-SIANFGVKRLVPSGPNNETSPPSPPHSIA-- 144

Query: 153 SKAKNGIGELTLGSKRLVPGGPNQAFPPETPPHSI----VTKLIP 193
                       G KRLVP GPN    P +PPHSI    V +L+P
Sbjct: 145 ----------NFGVKRLVPSGPNNETSPPSPPHSIADFGVKRLVP 175

[Close]

BLAST of HG10022471 vs. ExPASy TrEMBL
Match: A0A398A230 (Uncharacterized protein OS=Brassica campestris OX=3711 GN=BRARA_C03751 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 3.8e-20
Identity = 68/162 (41.98%), Postives = 80/162 (49.38%), Query Frame = 0


Query: 35  LKSLVPGGPNQAFPPETPPHNNKFTLDLKHLVPEGPNQAYPPGVPPHSIVTNSKAKNGIG 94
           +K LVP GPN    P +PPH  +  +++K LVP GPN    P  PPHSI           
Sbjct: 120 IKRLVPSGPNNETSPPSPPHFIE-DIEVKRLVPSGPNNETSPPSPPHSIA---------- 179

Query: 95  ELTLGPKRLVPGGPNQAFPPETPPHNSKFTLGLKYLVPEGPNQAYPPGVPPHNIVTNSKA 154
               G KRLVP GPN    P +PPH S    G+K LVP GPN    P  PPH+I      
Sbjct: 180 --DFGVKRLVPSGPNNETSPPSPPH-SIADFGVKRLVPSGPNNEASPPSPPHSIA----- 239

Query: 155 KNGIGELTLGSKRLVPGGPNQAFPPETPPHSI----VTKLIP 193
                    G KRLVP GPN    P +PP SI    V +L+P
Sbjct: 240 -------DFGVKRLVPSGPNNETSPPSPPRSIAGFGVKRLVP 255

The following BLAST results are available for this feature:

BLAST of HG10022471 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022932063.1	1.9e-34	52.07	uncharacterized protein LOC111438388 [Cucurbita moschata]	[more]
XP_022159163.1	9.9e-23	41.75	proline-rich proteoglycan 2-like [Momordica charantia]	[more]
VDC94000.1	7.1e-21	43.21	unnamed protein product [Brassica oleracea]	[more]
KAG2315933.1	2.1e-20	40.91	hypothetical protein Bca52824_019055 [Brassica carinata]	[more]
XP_033143265.1	2.1e-20	42.59	leucine-rich repeat extensin-like protein 5 [Brassica rapa]	[more]

BLAST of HG10022471 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10022471 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F0K6	9.3e-35	52.07	uncharacterized protein LOC111438388 OS=Cucurbita moschata OX=3662 GN=LOC1114383...	[more]
A0A6J1DY20	4.8e-23	41.75	proline-rich proteoglycan 2-like OS=Momordica charantia OX=3673 GN=LOC111025587 ...	[more]
A0A3P6B7Y9	3.4e-21	43.21	Uncharacterized protein OS=Brassica oleracea OX=3712 GN=BOLC3T17342H PE=4 SV=1	[more]
M4D9I0	4.5e-21	41.21	Uncharacterized protein OS=Brassica rapa subsp. pekinensis OX=51351 PE=4 SV=1	[more]
A0A398A230	3.8e-20	41.98	Uncharacterized protein OS=Brassica campestris OX=3711 GN=BRARA_C03751 PE=4 SV=1	[more]

BLAST of HG10022471 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 173..192
None	No IPR available	PANTHER	PTHR37380	CLE FAMILY OSCLE501 PROTEIN	coord: 4..187

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10022471.1	HG10022471.1	mRNA