HG10022308 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10022308
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Paired amphipathic helix protein Sin3-like 3 isoform X3
Location	Chr05: 22913479 .. 22914024 (+)
RNA-Seq Expression	HG10022308
Synteny	HG10022308

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGGACTTAAGGTTGTCAATGGTCTGGAGTGTAAAATCACATGCAATTCATCAAAGGTGGAGTTTCAATAGAATGTTCCTTTTATCCAACTTTTCTTCCGGTATCTCAAAAGCTATAGTTTTAATAAAACCAGTTTCCATTGAAATAGAACGAAAGTACAAAAGCTATAGTAATACAAAGACAAAGGCCCTAGCAAAAACTATTTTGACTTTTATTATGTAATTTTTTGTACAGAAATAGAACTGGGAGAGATCGAAGTTGATATTAGCGTTTATTTTGATAACGTTGGGTTTATATTTGATGTTGTAATTCATTTGTCTAGACTTGGGACTTCTGTTGATATGATGTGGTTTATACACCATAGGTCTCCTACGTTTTAGATACAGAAGACTATTTGTTTCGCACAAAAGGCAGAAGAAGAAGTTTGCATAGAGGTGATTCGTGCCGTCACCACCAGTCAAGGTCTTCAAATGGAAGCTCAAGTAGAGGTCACCGATATCAACGATGGCTATCGAGCTCATGATGCACATCCCACTACCTGA

mRNA sequence

ATGGAAGGACTTAAGGTTGTCAATGGTCTGGAGTGTAAAATCACATGCAATTCATCAAAGATACAGAAGACTATTTGTTTCGCACAAAAGGCAGAAGAAGAAGTTTGCATAGAGGTGATTCGTGCCGTCACCACCAGTCAAGGTCTTCAAATGGAAGCTCAAGTAGAGGTCACCGATATCAACGATGGCTATCGAGCTCATGATGCACATCCCACTACCTGA

Coding sequence (CDS)

ATGGAAGGACTTAAGGTTGTCAATGGTCTGGAGTGTAAAATCACATGCAATTCATCAAAGATACAGAAGACTATTTGTTTCGCACAAAAGGCAGAAGAAGAAGTTTGCATAGAGGTGATTCGTGCCGTCACCACCAGTCAAGGTCTTCAAATGGAAGCTCAAGTAGAGGTCACCGATATCAACGATGGCTATCGAGCTCATGATGCACATCCCACTACCTGA

Protein sequence

MEGLKVVNGLECKITCNSSKIQKTICFAQKAEEEVCIEVIRAVTTSQGLQMEAQVEVTDINDGYRAHDAHPTT

Homology

[Close]

BLAST of HG10022308 vs. NCBI nr
Match: KAA0040504.1 (paired amphipathic helix protein Sin3-like 4 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 131.0 bits (328), Expect = 4.3e-27
Identity = 65/73 (89.04%), Postives = 67/73 (91.78%), Query Frame = 0


Query: 1    MEGLKVVNGLECKITCNSSKIQKTICFAQKAEEEVCIEVIRAVTTSQGLQMEAQVEVTDI 60
            M GLKVVNGLECKITCNSSKIQKTICFAQKAEEEVCIEV+RAVTTSQGLQ+EAQ E  DI
Sbjct: 1297 MVGLKVVNGLECKITCNSSKIQKTICFAQKAEEEVCIEVVRAVTTSQGLQIEAQTEDNDI 1356

Query: 61   NDGYRAHDAHPTT 74
            NDG RAHDAHP T
Sbjct: 1357 NDGCRAHDAHPIT 1369

[Close]

BLAST of HG10022308 vs. NCBI nr
Match: TYK23458.1 (paired amphipathic helix protein Sin3-like 3 isoform X3 [Cucumis melo var. makuwa])

HSP 1 Score: 131.0 bits (328), Expect = 4.3e-27
Identity = 65/73 (89.04%), Postives = 67/73 (91.78%), Query Frame = 0


Query: 1   MEGLKVVNGLECKITCNSSKIQKTICFAQKAEEEVCIEVIRAVTTSQGLQMEAQVEVTDI 60
           M GLKVVNGLECKITCNSSKIQKTICFAQKAEEEVCIEV+RAVTTSQGLQ+EAQ E  DI
Sbjct: 780 MVGLKVVNGLECKITCNSSKIQKTICFAQKAEEEVCIEVVRAVTTSQGLQIEAQTEDNDI 839

Query: 61  NDGYRAHDAHPTT 74
           NDG RAHDAHP T
Sbjct: 840 NDGCRAHDAHPIT 852

[Close]

BLAST of HG10022308 vs. NCBI nr
Match: RDY08279.1 (DExH-box ATP-dependent RNA helicase DExH15 chloroplastic, partial [Mucuna pruriens])

HSP 1 Score: 62.8 bits (151), Expect = 1.4e-06
Identity = 29/69 (42.03%), Postives = 45/69 (65.22%), Query Frame = 0


Query: 1    MEGLKVVNGLECKITCNSSKIQKTICFAQKAEEEVCIEVIRAVTTSQGLQMEAQVEVTDI 60
            MEG++++NGLECKI C+SSKI KT CF ++ +EE C+  ++A+     LQ  AQ +  D 
Sbjct: 1360 MEGMQIINGLECKIACSSSKILKTFCFGREGKEESCVRRVQAM-NKHSLQTFAQADYNDS 1419

Query: 61   NDGYRAHDA 70
               +  H++
Sbjct: 1420 ASCFPLHES 1427

[Close]

BLAST of HG10022308 vs. NCBI nr
Match: TKY69771.1 (Paired amphipathic helix protein Sin3 4 [Spatholobus suberectus])

HSP 1 Score: 60.5 bits (145), Expect = 7.1e-06
Identity = 29/69 (42.03%), Postives = 44/69 (63.77%), Query Frame = 0


Query: 1    MEGLKVVNGLECKITCNSSKIQKTICFAQKAEEEVCIEVIRAVTTSQGLQMEAQVEVTDI 60
            MEGL+++NGLECKI C+SSKI KT CF ++ +E+ C+  +  +     LQ   Q E TD 
Sbjct: 1361 MEGLQIINGLECKIACSSSKILKTSCFGREEKEDPCVRRVHPM-NRHSLQTFVQAEYTDS 1420

Query: 61   NDGYRAHDA 70
             + +  H++
Sbjct: 1421 ANCFPLHES 1428

[Close]

BLAST of HG10022308 vs. NCBI nr
Match: KAF2302447.1 (hypothetical protein GH714_036385 [Hevea brasiliensis])

HSP 1 Score: 53.9 bits (128), Expect = 6.7e-04
Identity = 29/67 (43.28%), Postives = 39/67 (58.21%), Query Frame = 0


Query: 2    EGLKVVNGLECKITCNSSKIQKTICFAQKAEEEVCIEVIRAVTTSQGLQMEAQVEVTDIN 61
            EG +V NGLECKI CNSSKIQK  CF  K + ++    + A+T     ++  + E     
Sbjct: 1288 EGFQVFNGLECKIACNSSKIQKIFCFEPKGKGKLYNRAVHAMT-----RLIFRKEYRSST 1347

Query: 62   DGYRAHD 69
            DGY AH+
Sbjct: 1348 DGYPAHN 1349

[Close]

BLAST of HG10022308 vs. ExPASy TrEMBL
Match: A0A5D3DJ15 (Paired amphipathic helix protein Sin3-like 3 isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold278G00190 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.1e-27
Identity = 65/73 (89.04%), Postives = 67/73 (91.78%), Query Frame = 0


Query: 1   MEGLKVVNGLECKITCNSSKIQKTICFAQKAEEEVCIEVIRAVTTSQGLQMEAQVEVTDI 60
           M GLKVVNGLECKITCNSSKIQKTICFAQKAEEEVCIEV+RAVTTSQGLQ+EAQ E  DI
Sbjct: 780 MVGLKVVNGLECKITCNSSKIQKTICFAQKAEEEVCIEVVRAVTTSQGLQIEAQTEDNDI 839

Query: 61  NDGYRAHDAHPTT 74
           NDG RAHDAHP T
Sbjct: 840 NDGCRAHDAHPIT 852

[Close]

BLAST of HG10022308 vs. ExPASy TrEMBL
Match: A0A5A7TAL0 (Paired amphipathic helix protein Sin3-like 4 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold262G00500 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.1e-27
Identity = 65/73 (89.04%), Postives = 67/73 (91.78%), Query Frame = 0


Query: 1    MEGLKVVNGLECKITCNSSKIQKTICFAQKAEEEVCIEVIRAVTTSQGLQMEAQVEVTDI 60
            M GLKVVNGLECKITCNSSKIQKTICFAQKAEEEVCIEV+RAVTTSQGLQ+EAQ E  DI
Sbjct: 1297 MVGLKVVNGLECKITCNSSKIQKTICFAQKAEEEVCIEVVRAVTTSQGLQIEAQTEDNDI 1356

Query: 61   NDGYRAHDAHPTT 74
            NDG RAHDAHP T
Sbjct: 1357 NDGCRAHDAHPIT 1369

[Close]

BLAST of HG10022308 vs. ExPASy TrEMBL
Match: A0A371HZS5 (DExH-box ATP-dependent RNA helicase DExH15 chloroplastic (Fragment) OS=Mucuna pruriens OX=157652 GN=ISE2 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 7.0e-07
Identity = 29/69 (42.03%), Postives = 45/69 (65.22%), Query Frame = 0


Query: 1    MEGLKVVNGLECKITCNSSKIQKTICFAQKAEEEVCIEVIRAVTTSQGLQMEAQVEVTDI 60
            MEG++++NGLECKI C+SSKI KT CF ++ +EE C+  ++A+     LQ  AQ +  D 
Sbjct: 1360 MEGMQIINGLECKIACSSSKILKTFCFGREGKEESCVRRVQAM-NKHSLQTFAQADYNDS 1419

Query: 61   NDGYRAHDA 70
               +  H++
Sbjct: 1420 ASCFPLHES 1427

[Close]

BLAST of HG10022308 vs. ExPASy TrEMBL
Match: A0A803PD15 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.2e-05
Identity = 35/68 (51.47%), Postives = 43/68 (63.24%), Query Frame = 0


Query: 1    MEGLKVVNGLECKITCNSSKIQKTICFAQKAEEEVCIEVIRAVTTSQGLQMEAQVEVTDI 60
            MEGL+V NGLECKI C SSK  KT C  QK + ++CI+++ A T   GLQM  QVE    
Sbjct: 1368 MEGLQVTNGLECKIACISSK--KTFCSGQKGDGKICIKIVCA-TARVGLQM-VQVEHNGF 1427

Query: 61   NDGYRAHD 69
               + AHD
Sbjct: 1428 IGCFLAHD 1431

[Close]

BLAST of HG10022308 vs. ExPASy TrEMBL
Match: A0A6N2K0R3 (HDAC_interact domain-containing protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS15078 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.5e-04
Identity = 25/47 (53.19%), Postives = 31/47 (65.96%), Query Frame = 0


Query: 1    MEGLKVVNGLECKITCNSSKIQKTICFAQKAEEEVCIEVIRAVTTSQ 48
            MEG +V+NGLECKI CNSSK QK  C   K + ++C  +  A TT Q
Sbjct: 1379 MEGFRVLNGLECKIACNSSKTQKIFCSEHKRKTKLCSRMALATTTMQ 1425

The following BLAST results are available for this feature:

BLAST of HG10022308 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0040504.1	4.3e-27	89.04	paired amphipathic helix protein Sin3-like 4 isoform X1 [Cucumis melo var. makuw...	[more]
TYK23458.1	4.3e-27	89.04	paired amphipathic helix protein Sin3-like 3 isoform X3 [Cucumis melo var. makuw...	[more]
RDY08279.1	1.4e-06	42.03	DExH-box ATP-dependent RNA helicase DExH15 chloroplastic, partial [Mucuna prurie...	[more]
TKY69771.1	7.1e-06	42.03	Paired amphipathic helix protein Sin3 4 [Spatholobus suberectus]	[more]
KAF2302447.1	6.7e-04	43.28	hypothetical protein GH714_036385 [Hevea brasiliensis]	[more]

BLAST of HG10022308 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10022308 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DJ15	2.1e-27	89.04	Paired amphipathic helix protein Sin3-like 3 isoform X3 OS=Cucumis melo var. mak...	[more]
A0A5A7TAL0	2.1e-27	89.04	Paired amphipathic helix protein Sin3-like 4 isoform X1 OS=Cucumis melo var. mak...	[more]
A0A371HZS5	7.0e-07	42.03	DExH-box ATP-dependent RNA helicase DExH15 chloroplastic (Fragment) OS=Mucuna pr...	[more]
A0A803PD15	2.2e-05	51.47	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A6N2K0R3	2.5e-04	53.19	HDAC_interact domain-containing protein OS=Salix viminalis OX=40686 GN=SVIM_LOCU...	[more]

BLAST of HG10022308 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10022308.1	HG10022308.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045892	negative regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:1901363	heterocyclic compound binding
molecular_function	GO:0097159	organic cyclic compound binding
molecular_function	GO:0003714	transcription corepressor activity