HG10022271 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10022271
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	LOB domain-containing protein
Location	Chr05: 22504841 .. 22505044 (-)
RNA-Seq Expression	HG10022271
Synteny	HG10022271

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGTCGCCGCCGCCGCCACTGTCGTCGATGGTGGTTCTCAGCCCCTGCGCCGCCTGTAAGATCCTCCGCCGGAGATGCGTCGATAATTGTGTTTTAGCGCCTTATTTTCCTCCCACTGAGCCTCTCAAATTCGCCGCCGTGCATAAAATATTCGGAGCCGGCAACGTCATCAAGTTCCTGCAGGTAAACACCAACGTCTAA

mRNA sequence

ATGCAGTCGCCGCCGCCGCCACTGTCGTCGATGGTGGTTCTCAGCCCCTGCGCCGCCTGTAAGATCCTCCGCCGGAGATGCGTCGATAATTGTGTTTTAGCGCCTTATTTTCCTCCCACTGAGCCTCTCAAATTCGCCGCCGTGCATAAAATATTCGGAGCCGGCAACGTCATCAAGTTCCTGCAGGTAAACACCAACGTCTAA

Coding sequence (CDS)

ATGCAGTCGCCGCCGCCGCCACTGTCGTCGATGGTGGTTCTCAGCCCCTGCGCCGCCTGTAAGATCCTCCGCCGGAGATGCGTCGATAATTGTGTTTTAGCGCCTTATTTTCCTCCCACTGAGCCTCTCAAATTCGCCGCCGTGCATAAAATATTCGGAGCCGGCAACGTCATCAAGTTCCTGCAGGTAAACACCAACGTCTAA

Protein sequence

MQSPPPPLSSMVVLSPCAACKILRRRCVDNCVLAPYFPPTEPLKFAAVHKIFGAGNVIKFLQVNTNV

Homology

[Close]

BLAST of HG10022271 vs. NCBI nr
Match: KAG7016272.1 (LOB domain-containing protein 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 121.3 bits (303), Expect = 3.1e-24
Identity = 57/62 (91.94%), Postives = 58/62 (93.55%), Query Frame = 0


Query: 1  MQSPPPPLSSMVVLSPCAACKILRRRCVDNCVLAPYFPPTEPLKFAAVHKIFGAGNVIKF 60
          MQSPPPP   MVVLSPCAACKILRRRCVD CVLAPYFPPTEPLKFAAVH+IFGAGNVIKF
Sbjct: 1  MQSPPPPPPLMVVLSPCAACKILRRRCVDKCVLAPYFPPTEPLKFAAVHRIFGAGNVIKF 60

Query: 61 LQ 63
          LQ
Sbjct: 61 LQ 62

[Close]

BLAST of HG10022271 vs. NCBI nr
Match: KAG6578743.1 (LOB domain-containing protein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 121.3 bits (303), Expect = 3.1e-24
Identity = 57/62 (91.94%), Postives = 58/62 (93.55%), Query Frame = 0


Query: 1  MQSPPPPLSSMVVLSPCAACKILRRRCVDNCVLAPYFPPTEPLKFAAVHKIFGAGNVIKF 60
          MQSPPPP   MVVLSPCAACKILRRRCVD CVLAPYFPPTEPLKFAAVH+IFGAGNVIKF
Sbjct: 1  MQSPPPPPPLMVVLSPCAACKILRRRCVDKCVLAPYFPPTEPLKFAAVHRIFGAGNVIKF 60

Query: 61 LQ 63
          LQ
Sbjct: 61 LQ 62

[Close]

BLAST of HG10022271 vs. NCBI nr
Match: XP_022939142.1 (LOB domain-containing protein 1-like [Cucurbita moschata])

HSP 1 Score: 117.1 bits (292), Expect = 5.9e-23
Identity = 57/63 (90.48%), Postives = 58/63 (92.06%), Query Frame = 0


Query: 1  MQSPPPPLSS-MVVLSPCAACKILRRRCVDNCVLAPYFPPTEPLKFAAVHKIFGAGNVIK 60
          MQSPPPP    MVVLSPCAACKILRRRCVD CVLAPYFPPTEPLKFAAVH+IFGAGNVIK
Sbjct: 1  MQSPPPPPPPLMVVLSPCAACKILRRRCVDKCVLAPYFPPTEPLKFAAVHRIFGAGNVIK 60

Query: 61 FLQ 63
          FLQ
Sbjct: 61 FLQ 63

[Close]

BLAST of HG10022271 vs. NCBI nr
Match: TYK05721.1 (LOB domain-containing protein 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 113.6 bits (283), Expect = 6.5e-22
Identity = 52/62 (83.87%), Postives = 58/62 (93.55%), Query Frame = 0


Query: 1  MQSPPPPLSSMVVLSPCAACKILRRRCVDNCVLAPYFPPTEPLKFAAVHKIFGAGNVIKF 60
          MQSPPPP +  VVLSPCAACKILRR+CVDNC+LAPYFPPT+PLKFAAVH+I+GAGNVIKF
Sbjct: 1  MQSPPPPCT--VVLSPCAACKILRRKCVDNCILAPYFPPTDPLKFAAVHRIYGAGNVIKF 60

Query: 61 LQ 63
           Q
Sbjct: 61 FQ 60

[Close]

BLAST of HG10022271 vs. NCBI nr
Match: XP_023551518.1 (LOB domain-containing protein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 108.6 bits (270), Expect = 2.1e-20
Identity = 50/52 (96.15%), Postives = 51/52 (98.08%), Query Frame = 0


Query: 11 MVVLSPCAACKILRRRCVDNCVLAPYFPPTEPLKFAAVHKIFGAGNVIKFLQ 63
          MVVLSPCAACKILRRRCVD CVLAPYFPPTEPLKFAAVH+IFGAGNVIKFLQ
Sbjct: 1  MVVLSPCAACKILRRRCVDKCVLAPYFPPTEPLKFAAVHRIFGAGNVIKFLQ 52

[Close]

BLAST of HG10022271 vs. ExPASy Swiss-Prot
Match: Q9LQR0 (LOB domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=LBD1 PE=2 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 1.5e-21
Identity = 45/60 (75.00%), Postives = 50/60 (83.33%), Query Frame = 0


Query: 3  SPPPPLSSMVVLSPCAACKILRRRCVDNCVLAPYFPPTEPLKFAAVHKIFGAGNVIKFLQ 62
          SPPP LS  VVLSPCAACKILRRRC + CVLAPYFPPT+P KF   H++FGA N+IKFLQ
Sbjct: 20 SPPPSLSPRVVLSPCAACKILRRRCAERCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQ 79

[Close]

BLAST of HG10022271 vs. ExPASy Swiss-Prot
Match: Q9SK08 (LOB domain-containing protein 11 OS=Arabidopsis thaliana OX=3702 GN=LBD11 PE=2 SV=2)

HSP 1 Score: 98.6 bits (244), Expect = 2.8e-20
Identity = 46/66 (69.70%), Postives = 50/66 (75.76%), Query Frame = 0


Query: 3   SPPPPLSSM------VVLSPCAACKILRRRCVDNCVLAPYFPPTEPLKFAAVHKIFGAGN 62
           SPPPP S        VVLSPCAACKILRRRC D CVLAPYFPPT+P KF   H++FGA N
Sbjct: 36  SPPPPPSPQQPPQPPVVLSPCAACKILRRRCADKCVLAPYFPPTDPAKFTIAHRVFGASN 95

[Close]

BLAST of HG10022271 vs. ExPASy Swiss-Prot
Match: Q8LBW3 (LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 SV=2)

HSP 1 Score: 80.5 bits (197), Expect = 8.0e-15
Identity = 33/48 (68.75%), Postives = 39/48 (81.25%), Query Frame = 0


Query: 15 SPCAACKILRRRCVDNCVLAPYFPPTEPLKFAAVHKIFGAGNVIKFLQ 63
          SPCA+CK+LRRRC  +C+ APYFPP +P KFA VHK+FGA NV K LQ
Sbjct: 7  SPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQ 54

[Close]

BLAST of HG10022271 vs. ExPASy Swiss-Prot
Match: Q9AT61 (LOB domain-containing protein 13 OS=Arabidopsis thaliana OX=3702 GN=LBD13 PE=1 SV=2)

HSP 1 Score: 79.3 bits (194), Expect = 1.8e-14
Identity = 34/56 (60.71%), Postives = 43/56 (76.79%), Query Frame = 0


Query: 6  PPLSSMVVLSPCAACKILRRRCVDNCVLAPYFPPTEPLKFAAVHKIFGAGNVIKFL 62
          PP +++  ++PCAACK+LRRRC + C  +PYF P EP KFAAVHK+FGA NV K L
Sbjct: 42 PPGTTLNTVTPCAACKLLRRRCAEECPFSPYFSPHEPHKFAAVHKVFGASNVSKML 97

[Close]

BLAST of HG10022271 vs. ExPASy Swiss-Prot
Match: Q8L8Q3 (LOB domain-containing protein 25 OS=Arabidopsis thaliana OX=3702 GN=LBD25 PE=2 SV=3)

HSP 1 Score: 79.0 bits (193), Expect = 2.3e-14
Identity = 34/47 (72.34%), Postives = 37/47 (78.72%), Query Frame = 0


Query: 15 SPCAACKILRRRCVDNCVLAPYFPPTEPLKFAAVHKIFGAGNVIKFL 62
          SPCAACK LRR+C  +CV APYFPP EP KFA VH+IFGA NV K L
Sbjct: 38 SPCAACKFLRRKCTSDCVFAPYFPPEEPTKFANVHRIFGASNVSKIL 84

[Close]

BLAST of HG10022271 vs. ExPASy TrEMBL
Match: A0A6J1FFZ7 (LOB domain-containing protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111445138 PE=3 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.9e-23
Identity = 57/63 (90.48%), Postives = 58/63 (92.06%), Query Frame = 0


Query: 1  MQSPPPPLSS-MVVLSPCAACKILRRRCVDNCVLAPYFPPTEPLKFAAVHKIFGAGNVIK 60
          MQSPPPP    MVVLSPCAACKILRRRCVD CVLAPYFPPTEPLKFAAVH+IFGAGNVIK
Sbjct: 1  MQSPPPPPPPLMVVLSPCAACKILRRRCVDKCVLAPYFPPTEPLKFAAVHRIFGAGNVIK 60

Query: 61 FLQ 63
          FLQ
Sbjct: 61 FLQ 63

[Close]

BLAST of HG10022271 vs. ExPASy TrEMBL
Match: A0A5D3C1A9 (LOB domain-containing protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G002050 PE=3 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 3.2e-22
Identity = 52/62 (83.87%), Postives = 58/62 (93.55%), Query Frame = 0


Query: 1  MQSPPPPLSSMVVLSPCAACKILRRRCVDNCVLAPYFPPTEPLKFAAVHKIFGAGNVIKF 60
          MQSPPPP +  VVLSPCAACKILRR+CVDNC+LAPYFPPT+PLKFAAVH+I+GAGNVIKF
Sbjct: 1  MQSPPPPCT--VVLSPCAACKILRRKCVDNCILAPYFPPTDPLKFAAVHRIYGAGNVIKF 60

Query: 61 LQ 63
           Q
Sbjct: 61 FQ 60

[Close]

BLAST of HG10022271 vs. ExPASy TrEMBL
Match: A0A2G9G2A4 (LOB domain-containing protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_28234 PE=3 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.3e-20
Identity = 47/60 (78.33%), Postives = 52/60 (86.67%), Query Frame = 0


Query: 3  SPPPPLSSMVVLSPCAACKILRRRCVDNCVLAPYFPPTEPLKFAAVHKIFGAGNVIKFLQ 62
          SPPPP  S V+LSPCAACKILRRRCV+NCVLAPYFPPTEPLKF   H++FGA N+IK LQ
Sbjct: 27 SPPPPAPSRVILSPCAACKILRRRCVENCVLAPYFPPTEPLKFTIAHRVFGASNIIKLLQ 86

[Close]

BLAST of HG10022271 vs. ExPASy TrEMBL
Match: A0A6P3ZUA1 (LOB domain-containing protein 1-like OS=Ziziphus jujuba OX=326968 GN=LOC107413601 PE=3 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 3.9e-20
Identity = 47/62 (75.81%), Postives = 53/62 (85.48%), Query Frame = 0


Query: 1   MQSPPPPLSSMVVLSPCAACKILRRRCVDNCVLAPYFPPTEPLKFAAVHKIFGAGNVIKF 60
           + SPPPP S  VV+SPCAACKILRRRCVD CVLAPYFPPT+PLKF   H++FGA N+IKF
Sbjct: 62  LASPPPPPSPPVVVSPCAACKILRRRCVDKCVLAPYFPPTDPLKFTNAHRVFGASNIIKF 121

Query: 61  LQ 63
           LQ
Sbjct: 122 LQ 123

[Close]

BLAST of HG10022271 vs. ExPASy TrEMBL
Match: A0A6P3ZFL3 (LOB domain-containing protein 1-like OS=Ziziphus jujuba OX=326968 GN=LOC107413678 PE=3 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 3.9e-20
Identity = 47/62 (75.81%), Postives = 53/62 (85.48%), Query Frame = 0


Query: 1   MQSPPPPLSSMVVLSPCAACKILRRRCVDNCVLAPYFPPTEPLKFAAVHKIFGAGNVIKF 60
           + SPPPP S  VV+SPCAACKILRRRCVD CVLAPYFPPT+PLKF   H++FGA N+IKF
Sbjct: 62  LASPPPPPSPPVVVSPCAACKILRRRCVDKCVLAPYFPPTDPLKFTNAHRVFGASNIIKF 121

Query: 61  LQ 63
           LQ
Sbjct: 122 LQ 123

[Close]

BLAST of HG10022271 vs. TAIR 10
Match: AT1G07900.1 (LOB domain-containing protein 1 )

HSP 1 Score: 102.8 bits (255), Expect = 1.1e-22
Identity = 45/60 (75.00%), Postives = 50/60 (83.33%), Query Frame = 0


Query: 3  SPPPPLSSMVVLSPCAACKILRRRCVDNCVLAPYFPPTEPLKFAAVHKIFGAGNVIKFLQ 62
          SPPP LS  VVLSPCAACKILRRRC + CVLAPYFPPT+P KF   H++FGA N+IKFLQ
Sbjct: 20 SPPPSLSPRVVLSPCAACKILRRRCAERCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQ 79

[Close]

BLAST of HG10022271 vs. TAIR 10
Match: AT2G28500.1 (LOB domain-containing protein 11 )

HSP 1 Score: 98.6 bits (244), Expect = 2.0e-21
Identity = 46/66 (69.70%), Postives = 50/66 (75.76%), Query Frame = 0


Query: 3   SPPPPLSSM------VVLSPCAACKILRRRCVDNCVLAPYFPPTEPLKFAAVHKIFGAGN 62
           SPPPP S        VVLSPCAACKILRRRC D CVLAPYFPPT+P KF   H++FGA N
Sbjct: 36  SPPPPPSPQQPPQPPVVLSPCAACKILRRRCADKCVLAPYFPPTDPAKFTIAHRVFGASN 95

[Close]

BLAST of HG10022271 vs. TAIR 10
Match: AT2G30130.1 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 80.5 bits (197), Expect = 5.7e-16
Identity = 33/48 (68.75%), Postives = 39/48 (81.25%), Query Frame = 0


Query: 15 SPCAACKILRRRCVDNCVLAPYFPPTEPLKFAAVHKIFGAGNVIKFLQ 63
          SPCA+CK+LRRRC  +C+ APYFPP +P KFA VHK+FGA NV K LQ
Sbjct: 7  SPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQ 54

[Close]

BLAST of HG10022271 vs. TAIR 10
Match: AT2G30340.1 (LOB domain-containing protein 13 )

HSP 1 Score: 79.3 bits (194), Expect = 1.3e-15
Identity = 34/56 (60.71%), Postives = 43/56 (76.79%), Query Frame = 0


Query: 6  PPLSSMVVLSPCAACKILRRRCVDNCVLAPYFPPTEPLKFAAVHKIFGAGNVIKFL 62
          PP +++  ++PCAACK+LRRRC + C  +PYF P EP KFAAVHK+FGA NV K L
Sbjct: 42 PPGTTLNTVTPCAACKLLRRRCAEECPFSPYFSPHEPHKFAAVHKVFGASNVSKML 97

[Close]

BLAST of HG10022271 vs. TAIR 10
Match: AT3G27650.1 (LOB domain-containing protein 25 )

HSP 1 Score: 79.0 bits (193), Expect = 1.7e-15
Identity = 34/47 (72.34%), Postives = 37/47 (78.72%), Query Frame = 0


Query: 15 SPCAACKILRRRCVDNCVLAPYFPPTEPLKFAAVHKIFGAGNVIKFL 62
          SPCAACK LRR+C  +CV APYFPP EP KFA VH+IFGA NV K L
Sbjct: 38 SPCAACKFLRRKCTSDCVFAPYFPPEEPTKFANVHRIFGASNVSKIL 84

The following BLAST results are available for this feature:

BLAST of HG10022271 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7016272.1	3.1e-24	91.94	LOB domain-containing protein 1, partial [Cucurbita argyrosperma subsp. argyrosp...	[more]
KAG6578743.1	3.1e-24	91.94	LOB domain-containing protein 1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022939142.1	5.9e-23	90.48	LOB domain-containing protein 1-like [Cucurbita moschata]	[more]
TYK05721.1	6.5e-22	83.87	LOB domain-containing protein 1-like [Cucumis melo var. makuwa]	[more]
XP_023551518.1	2.1e-20	96.15	LOB domain-containing protein 1-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of HG10022271 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LQR0	1.5e-21	75.00	LOB domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=LBD1 PE=2 SV=...	[more]
Q9SK08	2.8e-20	69.70	LOB domain-containing protein 11 OS=Arabidopsis thaliana OX=3702 GN=LBD11 PE=2 S...	[more]
Q8LBW3	8.0e-15	68.75	LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 S...	[more]
Q9AT61	1.8e-14	60.71	LOB domain-containing protein 13 OS=Arabidopsis thaliana OX=3702 GN=LBD13 PE=1 S...	[more]
Q8L8Q3	2.3e-14	72.34	LOB domain-containing protein 25 OS=Arabidopsis thaliana OX=3702 GN=LBD25 PE=2 S...	[more]

BLAST of HG10022271 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FFZ7	2.9e-23	90.48	LOB domain-containing protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC1114451...	[more]
A0A5D3C1A9	3.2e-22	83.87	LOB domain-containing protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A2G9G2A4	1.3e-20	78.33	LOB domain-containing protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_2...	[more]
A0A6P3ZUA1	3.9e-20	75.81	LOB domain-containing protein 1-like OS=Ziziphus jujuba OX=326968 GN=LOC10741360...	[more]
A0A6P3ZFL3	3.9e-20	75.81	LOB domain-containing protein 1-like OS=Ziziphus jujuba OX=326968 GN=LOC10741367...	[more]

BLAST of HG10022271 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G07900.1	1.1e-22	75.00	LOB domain-containing protein 1	[more]
AT2G28500.1	2.0e-21	69.70	LOB domain-containing protein 11	[more]
AT2G30130.1	5.7e-16	68.75	Lateral organ boundaries (LOB) domain family protein	[more]
AT2G30340.1	1.3e-15	60.71	LOB domain-containing protein 13	[more]
AT3G27650.1	1.7e-15	72.34	LOB domain-containing protein 25	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	LOB	coord: 16..62 e-value: 1.1E-19 score: 70.8
IPR004883	Lateral organ boundaries, LOB	PROSITE	PS50891	LOB	coord: 15..67 score: 16.775494
None	No IPR available	PANTHER	PTHR31301:SF14	DOMAIN PROTEIN 1, PUTATIVE, EXPRESSED-RELATED	coord: 8..62
None	No IPR available	PANTHER	PTHR31301	LOB DOMAIN-CONTAINING PROTEIN 4-RELATED	coord: 8..62

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10022271.1	HG10022271.1	mRNA