HG10022265 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10022265
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr05: 22455175 .. 22455486 (-)
RNA-Seq ExpressionHG10022265
SyntenyHG10022265
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGATTCTCTTCAACAAGTTTCCGACGGTCGCGGCGGTGCTGCTGGTTGGTTTAATTCTTTGCTCCATTCCGATGAATGCGGCCGCCGTCGGCGAGCAATTCGTCAACGTCGGTGGCACAAACGTAATCCCGTCGGCGGCGGCGGATTATCATGAGTTTGATATCGGAAAGCCGCTTTATAGGATTAAAGAACGACAGCCCGATGTTCCGGACCTGATGGTTGAGAATATTAATCCGATTTCCGCTGCACCTGGATCCGCCCCGTCGCCGTCGCCGTCGCCTTCGCCTTCGCCTTCGCCTTCGGGCTAA

mRNA sequence

ATGGCGATTCTCTTCAACAAGTTTCCGACGGTCGCGGCGGTGCTGCTGGTTGGTTTAATTCTTTGCTCCATTCCGATGAATGCGGCCGCCGTCGGCGAGCAATTCGTCAACGTCGGTGGCACAAACGTAATCCCGTCGGCGGCGGCGGATTATCATGAGTTTGATATCGGAAAGCCGCTTTATAGGATTAAAGAACGACAGCCCGATGTTCCGGACCTGATGGTTGAGAATATTAATCCGATTTCCGCTGCACCTGGATCCGCCCCGTCGCCGTCGCCGTCGCCTTCGCCTTCGCCTTCGCCTTCGGGCTAA

Coding sequence (CDS)

ATGGCGATTCTCTTCAACAAGTTTCCGACGGTCGCGGCGGTGCTGCTGGTTGGTTTAATTCTTTGCTCCATTCCGATGAATGCGGCCGCCGTCGGCGAGCAATTCGTCAACGTCGGTGGCACAAACGTAATCCCGTCGGCGGCGGCGGATTATCATGAGTTTGATATCGGAAAGCCGCTTTATAGGATTAAAGAACGACAGCCCGATGTTCCGGACCTGATGGTTGAGAATATTAATCCGATTTCCGCTGCACCTGGATCCGCCCCGTCGCCGTCGCCGTCGCCTTCGCCTTCGCCTTCGCCTTCGGGCTAA

Protein sequence

MAILFNKFPTVAAVLLVGLILCSIPMNAAAVGEQFVNVGGTNVIPSAAADYHEFDIGKPLYRIKERQPDVPDLMVENINPISAAPGSAPSPSPSPSPSPSPSG
Homology
BLAST of HG10022265 vs. NCBI nr
Match: TYK05738.1 (hypothetical protein E5676_scaffold98G002250 [Cucumis melo var. makuwa])

HSP 1 Score: 110.2 bits (274), Expect = 1.1e-20
Identity = 65/98 (66.33%), Postives = 76/98 (77.55%), Query Frame = 0

Query: 1  MAILFNKFPTVAAVLLVGLILCSI-PMNAAAVGEQFVNVGGTNVIPSAAADYHEFDIGKP 60
          MAI FNKF T+AA LL+ LILCSI     AA  EQ +NV  TNVI ++AA+Y  FDIGKP
Sbjct: 1  MAIHFNKFSTIAAALLIHLILCSILSTTVAASNEQLLNVANTNVITASAAEYQAFDIGKP 60

Query: 61 LYRIKERQPDVPDLMVENINPISAAPGSAPSPSPSPSP 98
          LYR+KE Q  VPDL+VEN++ IS+AP SAPSPSPSPSP
Sbjct: 61 LYRVKE-QYHVPDLVVENLDSISSAPKSAPSPSPSPSP 97

BLAST of HG10022265 vs. NCBI nr
Match: KAG6578739.1 (hypothetical protein SDJN03_23187, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 61.2 bits (147), Expect = 5.9e-06
Identity = 52/121 (42.98%), Postives = 62/121 (51.24%), Query Frame = 0

Query: 1   MAILFNKFP---TVAAVLLVGLILCSIPMNAAAVGEQFVNVGGTNVIPSAAADYHEFDIG 60
           MA+LFNK P   TVA+ LLVG+ILCSIP  A A G      G  N + S+  D   + +G
Sbjct: 1   MAVLFNKSPSRATVASALLVGIILCSIPTIAMAAG------GNLNGMDSSGND-KVYSVG 60

Query: 61  KPLYRIKER------------------QPDVPDLMVENINPISAAPGSAPSPSPSPSPSP 101
            PLYR+KE                   +P VP +      P S  P SAPSP  SPSPSP
Sbjct: 61  MPLYRVKESSGDDKVFFVGMPHYKTEDEPSVP-ISDNTFEPSSITPASAPSPLQSPSPSP 113

BLAST of HG10022265 vs. ExPASy TrEMBL
Match: A0A5D3C3F2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G002250 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 5.4e-21
Identity = 65/98 (66.33%), Postives = 76/98 (77.55%), Query Frame = 0

Query: 1  MAILFNKFPTVAAVLLVGLILCSI-PMNAAAVGEQFVNVGGTNVIPSAAADYHEFDIGKP 60
          MAI FNKF T+AA LL+ LILCSI     AA  EQ +NV  TNVI ++AA+Y  FDIGKP
Sbjct: 1  MAIHFNKFSTIAAALLIHLILCSILSTTVAASNEQLLNVANTNVITASAAEYQAFDIGKP 60

Query: 61 LYRIKERQPDVPDLMVENINPISAAPGSAPSPSPSPSP 98
          LYR+KE Q  VPDL+VEN++ IS+AP SAPSPSPSPSP
Sbjct: 61 LYRVKE-QYHVPDLVVENLDSISSAPKSAPSPSPSPSP 97

BLAST of HG10022265 vs. ExPASy TrEMBL
Match: A0A0A0KNL8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G497040 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 4.3e-18
Identity = 65/101 (64.36%), Postives = 74/101 (73.27%), Query Frame = 0

Query: 1   MAILFNKFPTVAAVLLVGLILCSI-PMNAAAVGEQFVNVGGT-NVIPSAAADYHEFDIGK 60
           MAILFNKF T+ A LL+  ILCSI     AA  EQ +NV    N I ++AA+Y  FDIGK
Sbjct: 1   MAILFNKFSTIPAALLIHFILCSIFSTMFAATNEQLLNVANAKNGITASAAEYQAFDIGK 60

Query: 61  PLYRIKERQPDVPDLMVENINPISAAPGSAPSPSPSPSPSP 100
           PLYRIKE Q  VPDL+VENI+ IS+AP SAPSPSPSPS SP
Sbjct: 61  PLYRIKE-QYHVPDLVVENIDSISSAPSSAPSPSPSPSRSP 100

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK05738.11.1e-2066.33hypothetical protein E5676_scaffold98G002250 [Cucumis melo var. makuwa][more]
KAG6578739.15.9e-0642.98hypothetical protein SDJN03_23187, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3C3F25.4e-2166.33Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KNL84.3e-1864.36Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G497040 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 86..103
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 80..103

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10022265.1HG10022265.1mRNA