HG10022251 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10022251
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description50S ribosomal protein L23, chloroplastic
LocationChr05: 22346721 .. 22348457 (+)
RNA-Seq ExpressionHG10022251
SyntenyHG10022251
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCCAAAAGGTAAGCTTATCAACTTATACATTTAACAGTTATCGATTACCCTTTTATGCACAAGACATTCAAATTATTTTCCGTGCTACTTCATTTCTCATGACTGCCGTTCGGTATTTATTCGGCACACTCATTAAACAGTCGCGATTTGGTTCTTTAGAATTAGTTGTTGAAAACAAAATGAGTTTAGAATTTCAGAGAAATAGATGTAATTAAACAAAATTACAAGATCTGAATCATCTGTTTAGAATTTAGTCCGCCCGCTACTAACTTCATGTGATCTTACGACAAAAAGTTTTGCTTGAATATATCAGGTCCACTACTTATTTTTTGGTCTGGCAAGTCCATGTTGCCAAATAGTTTGTATAGGGTCAAAAGTAGAAAAATGATGATTAGAAGGTTATTATTAGTGTGAATATCATTTGTATAAACTGCGTTAGAAGGCTCATAGAATTTGTAGAATATAGGCGTTTTATACACCATGGTAGGATGTGTGATATTGAGTTTTATGGACTAAGATCATTAATACTGTTATGCGGTTTGCGAAATGGACGTATGCCTGTGATGTGGTGAAGTAAGTTTCATTTAATAAATTAGTATTATATGATTGGATCTTGTCCTGGGTTGATCATGTGTTGACATCTTAATTTTTAAGGCTCTCTTCATTATTTGAAGTAACTTTGCTGTGGTTCAGCTCTAATATCTTTCCAATTCCGAAATGTACTGTTTATAAACGCTGTAACTCTCAAATGAAATACCACGCATGGGAGAACTTGGCATTATAATGATAATCAGTCTTAGATATGTGGTTCCACTGGGTGATGATTTTCTCTACTGTATGCATCCAAGACTGAATTCAAGAACACTTGCACACACAAAGTTCTTGGATAATGGATTAGTTTTTAGTGAATAAACTAATCAGGCTTGATACTTCTCTTCCCCTCAGCTGACAGTACCAAGAAGGCTGACCCTAAGGCTCAAGCCTTGAAAACTGCCAAGGCAGTAAAATCGGGTCCGACATTTAAGAAGAAAGCCAAGAAAATCAGGACATCTGTCACATTTCACCGTCCAAAGACATTGAAGAAGGACAGAAATCCCAAGTATCCACGCATCAGTGTTACACCACGGAACAAGTTGGACCAGTATCAGATTCTTAAATACCCTTTGACTACTGAGTCTGCAATGAAGAAGATCGAGGACAATAATACTTTGGTTTTCATTGTTGACATTCGTGCTGATAAGAAAAAGATCAAGGATGCCGTGAAAAAGATGTATGACATCCAGACCAAGAAAGTGAACACATTGATCAGGTAATCTTAATCAAACATTTAACATTCCTATAGTTTCTTCTTAGAATGTTGACTTGTACTGTTCGATGTGATCTCAATCTATAAGTTAACTATTATCTTCGACTGAAATGTTCCTACATCTTGTGGATATTTCTTGTATAATCCAGCTCTGAGATCTATTCTAGCATGTAAATGATTAGGCAGTCCTATTTTATCAATCACATCTTTCTGAGCCAACTTATCTATAAATTTAAGCACTTTGATTATGATCATGAAATGTTTATTTATTTCTTGGTTTTATGTGTATCTACTGCACCATGATACACACCCTGATAACGTGCTTTACACAACAATTGCAGGCCGGATGGAACCAAGAAGGCATATGTTAGGCTGACTCCGGATTACGATGCTTTGGATGTTGCAAACAAGATCGGAATCATCTAA

mRNA sequence

ATGGCTCCAAAAGCTGACAGTACCAAGAAGGCTGACCCTAAGGCTCAAGCCTTGAAAACTGCCAAGGCAGTAAAATCGGGTCCGACATTTAAGAAGAAAGCCAAGAAAATCAGGACATCTGTCACATTTCACCGTCCAAAGACATTGAAGAAGGACAGAAATCCCAAGTATCCACGCATCAGTGTTACACCACGGAACAAGTTGGACCAGTATCAGATTCTTAAATACCCTTTGACTACTGAGTCTGCAATGAAGAAGATCGAGGACAATAATACTTTGGTTTTCATTGTTGACATTCGTGCTGATAAGAAAAAGATCAAGGATGCCGTGAAAAAGATGTATGACATCCAGACCAAGAAAGTGAACACATTGATCAGGCCGGATGGAACCAAGAAGGCATATGTTAGGCTGACTCCGGATTACGATGCTTTGGATGTTGCAAACAAGATCGGAATCATCTAA

Coding sequence (CDS)

ATGGCTCCAAAAGCTGACAGTACCAAGAAGGCTGACCCTAAGGCTCAAGCCTTGAAAACTGCCAAGGCAGTAAAATCGGGTCCGACATTTAAGAAGAAAGCCAAGAAAATCAGGACATCTGTCACATTTCACCGTCCAAAGACATTGAAGAAGGACAGAAATCCCAAGTATCCACGCATCAGTGTTACACCACGGAACAAGTTGGACCAGTATCAGATTCTTAAATACCCTTTGACTACTGAGTCTGCAATGAAGAAGATCGAGGACAATAATACTTTGGTTTTCATTGTTGACATTCGTGCTGATAAGAAAAAGATCAAGGATGCCGTGAAAAAGATGTATGACATCCAGACCAAGAAAGTGAACACATTGATCAGGCCGGATGGAACCAAGAAGGCATATGTTAGGCTGACTCCGGATTACGATGCTTTGGATGTTGCAAACAAGATCGGAATCATCTAA

Protein sequence

MAPKADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRISVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Homology
[Close]
BLAST of HG10022251 vs. NCBI nr
Match: XP_008463516.1 (PREDICTED: 60S ribosomal protein L23a [Cucumis melo] >TYK05769.1 60S ribosomal protein L23a [Cucumis melo var. makuwa])

HSP 1 Score: 288.1 bits (736), Expect = 4.4e-74
Identity = 152/153 (99.35%), Postives = 153/153 (100.00%), Query Frame = 0 

Query: 1   MAPKADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60
           MAPKADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKK+RNPKYPRI
Sbjct: 1   MAPKADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI 60

Query: 61  SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120
           SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK
Sbjct: 61  SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]
BLAST of HG10022251 vs. NCBI nr
Match: XP_004149813.1 (60S ribosomal protein L23a [Cucumis sativus] >KGN51263.1 hypothetical protein Csa_007796 [Cucumis sativus])

HSP 1 Score: 288.1 bits (736), Expect = 4.4e-74
Identity = 152/153 (99.35%), Postives = 152/153 (99.35%), Query Frame = 0 

Query: 1   MAPKADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60
           MAPKADSTKK DPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI
Sbjct: 1   MAPKADSTKKTDPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60

Query: 61  SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120
           SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK
Sbjct: 61  SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]
BLAST of HG10022251 vs. NCBI nr
Match: XP_022154290.1 (60S ribosomal protein L23a [Momordica charantia] >XP_022154291.1 60S ribosomal protein L23a [Momordica charantia])

HSP 1 Score: 287.0 bits (733), Expect = 9.8e-74
Identity = 151/153 (98.69%), Postives = 152/153 (99.35%), Query Frame = 0 

Query: 1   MAPKADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60
           MAPKAD+TKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI
Sbjct: 1   MAPKADNTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60

Query: 61  SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120
           S TPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK
Sbjct: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]
BLAST of HG10022251 vs. NCBI nr
Match: XP_022995723.1 (60S ribosomal protein L23a [Cucurbita maxima])

HSP 1 Score: 286.6 bits (732), Expect = 1.3e-73
Identity = 151/153 (98.69%), Postives = 152/153 (99.35%), Query Frame = 0 

Query: 1   MAPKADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60
           MAPKADS+KKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI
Sbjct: 1   MAPKADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60

Query: 61  SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120
           S TPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK
Sbjct: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]
BLAST of HG10022251 vs. NCBI nr
Match: KAG7031627.1 (60S ribosomal protein L23a, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 285.8 bits (730), Expect = 2.2e-73
Identity = 151/153 (98.69%), Postives = 151/153 (98.69%), Query Frame = 0 

Query: 1   MAPKADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60
           MAPKADS KKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI
Sbjct: 33  MAPKADSIKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 92

Query: 61  SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120
           S TPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK
Sbjct: 93  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 152

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 153 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 185

[Close]
BLAST of HG10022251 vs. ExPASy Swiss-Prot
Match: Q9AT35 (60S ribosomal protein L23a OS=Daucus carota OX=4039 GN=RPL23A PE=2 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 8.4e-68
Identity = 140/154 (90.91%), Postives = 144/154 (93.51%), Query Frame = 0 

Query: 1   MAP-KADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPR 60
           M+P K D TKK+D KAQALKTAKAVKSG T  KK KKIRTSVTFHRP+TL KDRNPKYPR
Sbjct: 1   MSPAKVDVTKKSDAKAQALKTAKAVKSGTTKFKKVKKIRTSVTFHRPRTLTKDRNPKYPR 60

Query: 61  ISVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120
           IS TPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRA+KKKIKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]
BLAST of HG10022251 vs. ExPASy Swiss-Prot
Match: Q07761 (60S ribosomal protein L23a OS=Nicotiana tabacum OX=4097 GN=RPL23A PE=2 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 3.2e-67
Identity = 138/154 (89.61%), Postives = 143/154 (92.86%), Query Frame = 0 

Query: 1   MAP-KADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPR 60
           MAP KAD +KK+DPKAQA K AKAVKSG T KKK++KIRT VTFHRPKTLKKDRNPKYPR
Sbjct: 1   MAPAKADPSKKSDPKAQAAKVAKAVKSGSTLKKKSQKIRTKVTFHRPKTLKKDRNPKYPR 60

Query: 61  ISVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120
           IS   RNKLDQY ILKYPLTTESAMKKIEDNNTLVFIVDI+ADKKKIKDAVKKMYDIQTK
Sbjct: 61  ISAPGRNKLDQYGILKYPLTTESAMKKIEDNNTLVFIVDIKADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]
BLAST of HG10022251 vs. ExPASy Swiss-Prot
Match: Q8LD46 (60S ribosomal protein L23a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL23AA PE=2 SV=2)

HSP 1 Score: 253.4 bits (646), Expect = 1.6e-66
Identity = 137/154 (88.96%), Postives = 141/154 (91.56%), Query Frame = 0 

Query: 1   MAP-KADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPR 60
           M+P K D+TKKADPKA+ALK AKAVKSG  FKKK KKIRT VTFHRPKTL K R  KYP+
Sbjct: 1   MSPAKVDTTKKADPKAKALKAAKAVKSGQAFKKKDKKIRTKVTFHRPKTLTKPRTGKYPK 60

Query: 61  ISVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120
           IS TPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]
BLAST of HG10022251 vs. ExPASy Swiss-Prot
Match: O22644 (60S ribosomal protein L23A OS=Fritillaria agrestis OX=64177 GN=RPL23A PE=2 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 3.5e-66
Identity = 138/154 (89.61%), Postives = 140/154 (90.91%), Query Frame = 0 

Query: 1   MAPKADSTKKADPKAQALKTAKAVKSG-PTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPR 60
           MAP A   KK D KAQALK AKAVKSG  T +KKAKKIRTSVTFHRPKTLKKDRNPKYPR
Sbjct: 1   MAPPAKVAKKPDGKAQALKVAKAVKSGVSTLQKKAKKIRTSVTFHRPKTLKKDRNPKYPR 60

Query: 61  ISVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120
           IS  PRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIK AVKKMYDIQTK
Sbjct: 61  ISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           KVNTLIRPDGTKKAYVRLTPDYDALD+ANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDIANKIGII 154

[Close]
BLAST of HG10022251 vs. ExPASy Swiss-Prot
Match: Q9M3C3 (60S ribosomal protein L23a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL23AB PE=2 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 1.7e-65
Identity = 136/154 (88.31%), Postives = 139/154 (90.26%), Query Frame = 0 

Query: 1   MAP-KADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPR 60
           M+P K D TKKADPKA+ALK AKAVKSG   KK AKKIRT VTFHRPKTL   R PKYP+
Sbjct: 1   MSPAKVDVTKKADPKAKALKAAKAVKSGQIVKKPAKKIRTKVTFHRPKTLTVPRKPKYPK 60

Query: 61  ISVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120
           IS TPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]
BLAST of HG10022251 vs. ExPASy TrEMBL
Match: A0A5D3C5W3 (50S ribosomal protein L23, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G002640 PE=3 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 2.1e-74
Identity = 152/153 (99.35%), Postives = 153/153 (100.00%), Query Frame = 0 

Query: 1   MAPKADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60
           MAPKADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKK+RNPKYPRI
Sbjct: 1   MAPKADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI 60

Query: 61  SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120
           SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK
Sbjct: 61  SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]
BLAST of HG10022251 vs. ExPASy TrEMBL
Match: A0A0A0KNR3 (50S ribosomal protein L23, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_5G505240 PE=3 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 2.1e-74
Identity = 152/153 (99.35%), Postives = 152/153 (99.35%), Query Frame = 0 

Query: 1   MAPKADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60
           MAPKADSTKK DPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI
Sbjct: 1   MAPKADSTKKTDPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60

Query: 61  SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120
           SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK
Sbjct: 61  SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]
BLAST of HG10022251 vs. ExPASy TrEMBL
Match: A0A1S3CJE6 (50S ribosomal protein L23, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501656 PE=3 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 2.1e-74
Identity = 152/153 (99.35%), Postives = 153/153 (100.00%), Query Frame = 0 

Query: 1   MAPKADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60
           MAPKADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKK+RNPKYPRI
Sbjct: 1   MAPKADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI 60

Query: 61  SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120
           SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK
Sbjct: 61  SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]
BLAST of HG10022251 vs. ExPASy TrEMBL
Match: A0A6J1DJ76 (50S ribosomal protein L23, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111021582 PE=3 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 4.8e-74
Identity = 151/153 (98.69%), Postives = 152/153 (99.35%), Query Frame = 0 

Query: 1   MAPKADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60
           MAPKAD+TKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI
Sbjct: 1   MAPKADNTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60

Query: 61  SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120
           S TPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK
Sbjct: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]
BLAST of HG10022251 vs. ExPASy TrEMBL
Match: A0A6J1K8U2 (50S ribosomal protein L23, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111491145 PE=3 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 6.2e-74
Identity = 151/153 (98.69%), Postives = 152/153 (99.35%), Query Frame = 0 

Query: 1   MAPKADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60
           MAPKADS+KKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI
Sbjct: 1   MAPKADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60

Query: 61  SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120
           S TPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK
Sbjct: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]
BLAST of HG10022251 vs. TAIR 10
Match: AT2G39460.1 (ribosomal protein L23AA )

HSP 1 Score: 253.4 bits (646), Expect = 1.1e-67
Identity = 137/154 (88.96%), Postives = 141/154 (91.56%), Query Frame = 0 

Query: 1   MAP-KADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPR 60
           M+P K D+TKKADPKA+ALK AKAVKSG  FKKK KKIRT VTFHRPKTL K R  KYP+
Sbjct: 1   MSPAKVDTTKKADPKAKALKAAKAVKSGQAFKKKDKKIRTKVTFHRPKTLTKPRTGKYPK 60

Query: 61  ISVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120
           IS TPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]
BLAST of HG10022251 vs. TAIR 10
Match: AT2G39460.2 (ribosomal protein L23AA )

HSP 1 Score: 253.4 bits (646), Expect = 1.1e-67
Identity = 137/154 (88.96%), Postives = 141/154 (91.56%), Query Frame = 0 

Query: 1   MAP-KADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPR 60
           M+P K D+TKKADPKA+ALK AKAVKSG  FKKK KKIRT VTFHRPKTL K R  KYP+
Sbjct: 1   MSPAKVDTTKKADPKAKALKAAKAVKSGQAFKKKDKKIRTKVTFHRPKTLTKPRTGKYPK 60

Query: 61  ISVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120
           IS TPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]
BLAST of HG10022251 vs. TAIR 10
Match: AT3G55280.1 (ribosomal protein L23AB )

HSP 1 Score: 250.0 bits (637), Expect = 1.2e-66
Identity = 136/154 (88.31%), Postives = 139/154 (90.26%), Query Frame = 0 

Query: 1   MAP-KADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPR 60
           M+P K D TKKADPKA+ALK AKAVKSG   KK AKKIRT VTFHRPKTL   R PKYP+
Sbjct: 1   MSPAKVDVTKKADPKAKALKAAKAVKSGQIVKKPAKKIRTKVTFHRPKTLTVPRKPKYPK 60

Query: 61  ISVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120
           IS TPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]
BLAST of HG10022251 vs. TAIR 10
Match: AT3G55280.2 (ribosomal protein L23AB )

HSP 1 Score: 250.0 bits (637), Expect = 1.2e-66
Identity = 136/154 (88.31%), Postives = 139/154 (90.26%), Query Frame = 0 

Query: 1   MAP-KADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPR 60
           M+P K D TKKADPKA+ALK AKAVKSG   KK AKKIRT VTFHRPKTL   R PKYP+
Sbjct: 1   MSPAKVDVTKKADPKAKALKAAKAVKSGQIVKKPAKKIRTKVTFHRPKTLTVPRKPKYPK 60

Query: 61  ISVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120
           IS TPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]
BLAST of HG10022251 vs. TAIR 10
Match: AT3G55280.3 (ribosomal protein L23AB )

HSP 1 Score: 238.4 bits (607), Expect = 3.7e-63
Identity = 132/154 (85.71%), Postives = 135/154 (87.66%), Query Frame = 0 

Query: 1   MAP-KADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPR 60
           M+P K D TKKADPKA+ALK AKAVKSG        KIRT VTFHRPKTL   R PKYP+
Sbjct: 1   MSPAKVDVTKKADPKAKALKAAKAVKSGQI------KIRTKVTFHRPKTLTVPRKPKYPK 60

Query: 61  ISVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120
           IS TPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 148

The following BLAST results are available for this feature:
BLAST of HG10022251 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008463516.14.4e-7499.35PREDICTED: 60S ribosomal protein L23a [Cucumis melo] >TYK05769.1 60S ribosomal p... [more]
XP_004149813.14.4e-7499.3560S ribosomal protein L23a [Cucumis sativus] >KGN51263.1 hypothetical protein Cs... [more]
XP_022154290.19.8e-7498.6960S ribosomal protein L23a [Momordica charantia] >XP_022154291.1 60S ribosomal p... [more]
XP_022995723.11.3e-7398.6960S ribosomal protein L23a [Cucurbita maxima][more]
KAG7031627.12.2e-7398.6960S ribosomal protein L23a, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
BLAST of HG10022251 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9AT358.4e-6890.9160S ribosomal protein L23a OS=Daucus carota OX=4039 GN=RPL23A PE=2 SV=1[more]
Q077613.2e-6789.6160S ribosomal protein L23a OS=Nicotiana tabacum OX=4097 GN=RPL23A PE=2 SV=1[more]
Q8LD461.6e-6688.9660S ribosomal protein L23a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL23AA PE=2 SV=... [more]
O226443.5e-6689.6160S ribosomal protein L23A OS=Fritillaria agrestis OX=64177 GN=RPL23A PE=2 SV=1[more]
Q9M3C31.7e-6588.3160S ribosomal protein L23a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL23AB PE=2 SV=... [more]
BLAST of HG10022251 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3C5W32.1e-7499.3550S ribosomal protein L23, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A0A0KNR32.1e-7499.3550S ribosomal protein L23, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_5G505... [more]
A0A1S3CJE62.1e-7499.3550S ribosomal protein L23, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501656... [more]
A0A6J1DJ764.8e-7498.6950S ribosomal protein L23, chloroplastic OS=Momordica charantia OX=3673 GN=LOC11... [more]
A0A6J1K8U26.2e-7498.6950S ribosomal protein L23, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11149... [more]
BLAST of HG10022251 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G39460.11.1e-6788.96ribosomal protein L23AA [more]
AT2G39460.21.1e-6788.96ribosomal protein L23AA [more]
AT3G55280.11.2e-6688.31ribosomal protein L23AB [more]
AT3G55280.21.2e-6688.31ribosomal protein L23AB [more]
AT3G55280.33.7e-6385.71ribosomal protein L23AB [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005633Ribosomal protein L23/L25, N-terminalPFAMPF03939Ribosomal_L23eNcoord: 14..62
e-value: 1.4E-18
score: 66.8
IPR013025Ribosomal protein L25/L23PFAMPF00276Ribosomal_L23coord: 73..135
e-value: 1.6E-14
score: 54.0
IPR013025Ribosomal protein L25/L23PANTHERPTHR1162060S RIBOSOMAL PROTEIN L23Acoord: 1..153
IPR013025Ribosomal protein L25/L23HAMAPMF_01369_ARibosomal_L23_Acoord: 73..153
score: 22.356056
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 34..153
e-value: 5.0E-53
score: 180.3
IPR019985Ribosomal protein L23TIGRFAMTIGR03636TIGR03636coord: 77..153
e-value: 5.0E-29
score: 98.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..16
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..38
NoneNo IPR availablePANTHERPTHR11620:SF81RIBOSOMAL PROTEIN L23A, PUTATIVE-RELATEDcoord: 1..153
IPR001014Ribosomal protein L23/L25, conserved sitePROSITEPS00050RIBOSOMAL_L23coord: 131..146
IPR012678Ribosomal protein L23/L15e core domain superfamilySUPERFAMILY54189Ribosomal proteins S24e, L23 and L15ecoord: 71..146

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10022251.1HG10022251.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000027 ribosomal large subunit assembly
biological_process GO:0006412 translation
cellular_component GO:0022625 cytosolic large ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003729 mRNA binding
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome