HG10022130 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10022130
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Protein kinase domain containing protein
Location	Chr05: 21140929 .. 21141336 (-)
RNA-Seq Expression	HG10022130
Synteny	HG10022130

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTTCTCCAATTCCAAGTTTCTCACTATCTTTCTGCTCTTCTGCAGCCTTCTTCACCTTGGCTTTGCCAATGAAGAAGTTGTGGACAACCCCATTGCTCAGAGTGAGATTGTAGGCCAACGTCTGCCTTATGTACAGGACTGCTGCAATTACTGCCACACAGGAACCTGCTGCGGCGGTGGCGACTATTGCAAACCTCCTTGTCTGCAAAATGGATGTGGGTGTGTGGAGAATCCGAGCGGCAGGTGCTGTTCTGGCTCGATTTGCCGTCCTTCTTGTCCGCCGTACCAATGTCAGGGACCGTGCCCATCTTGTAGCTGTGTGAGAAGCAATGTCAAGGTTGAGGGACAGCATGAATCGAACTCTGATCATCCTAGCAGTGAATCAAAGCCTCCAAAGCATTGA

mRNA sequence

ATGGCCTTCTCCAATTCCAAGTTTCTCACTATCTTTCTGCTCTTCTGCAGCCTTCTTCACCTTGGCTTTGCCAATGAAGAAGTTGTGGACAACCCCATTGCTCAGAGTGAGATTGTAGGCCAACGTCTGCCTTATGTACAGGACTGCTGCAATTACTGCCACACAGGAACCTGCTGCGGCGGTGGCGACTATTGCAAACCTCCTTGTCTGCAAAATGGATGTGGGTGTGTGGAGAATCCGAGCGGCAGGTGCTGTTCTGGCTCGATTTGCCGTCCTTCTTGTCCGCCGTACCAATGTCAGGGACCGTGCCCATCTTGTAGCTGTGTGAGAAGCAATGTCAAGGTTGAGGGACAGCATGAATCGAACTCTGATCATCCTAGCAGTGAATCAAAGCCTCCAAAGCATTGA

Coding sequence (CDS)

ATGGCCTTCTCCAATTCCAAGTTTCTCACTATCTTTCTGCTCTTCTGCAGCCTTCTTCACCTTGGCTTTGCCAATGAAGAAGTTGTGGACAACCCCATTGCTCAGAGTGAGATTGTAGGCCAACGTCTGCCTTATGTACAGGACTGCTGCAATTACTGCCACACAGGAACCTGCTGCGGCGGTGGCGACTATTGCAAACCTCCTTGTCTGCAAAATGGATGTGGGTGTGTGGAGAATCCGAGCGGCAGGTGCTGTTCTGGCTCGATTTGCCGTCCTTCTTGTCCGCCGTACCAATGTCAGGGACCGTGCCCATCTTGTAGCTGTGTGAGAAGCAATGTCAAGGTTGAGGGACAGCATGAATCGAACTCTGATCATCCTAGCAGTGAATCAAAGCCTCCAAAGCATTGA

Protein sequence

MAFSNSKFLTIFLLFCSLLHLGFANEEVVDNPIAQSEIVGQRLPYVQDCCNYCHTGTCCGGGDYCKPPCLQNGCGCVENPSGRCCSGSICRPSCPPYQCQGPCPSCSCVRSNVKVEGQHESNSDHPSSESKPPKH

Homology

[Close]

BLAST of HG10022130 vs. NCBI nr
Match: XP_022993676.1 (uncharacterized protein LOC111489599 [Cucurbita maxima])

HSP 1 Score: 193.4 bits (490), Expect = 1.3e-45
Identity = 98/144 (68.06%), Postives = 110/144 (76.39%), Query Frame = 0


Query: 1   MAFSNSKFLTIFLLFCSLLHLGFANEEVVDNPIAQSEIVGQRLPYVQDCCNYCHTGTCCG 60
           MA S SKFLT+FLLFC+LLHLGFANE+V+D+ IAQSE+VGQRLPY QDCCNY HTG+C G
Sbjct: 18  MAISKSKFLTLFLLFCTLLHLGFANEQVIDDAIAQSEVVGQRLPYAQDCCNYGHTGSCVG 77

Query: 61  -------GGDY--CKPPCLQNGCGCVENPSGRCCSGSICRPSCPPYQCQGPCPSCSCVRS 120
                  GGDY    P C+QNGCGCVENPS  CC+GS+  PS P  Q QGP P C CVR+
Sbjct: 78  SPNCCGNGGDYDNSPPHCVQNGCGCVENPSNNCCAGSVGHPSPPSCQWQGPSPCCGCVRT 137

Query: 121 NVKVEGQHESNSDHPSSESKPPKH 136
           NVKVE Q+ESNSD PSSES  P H
Sbjct: 138 NVKVEEQNESNSDRPSSESMTPMH 161

[Close]

BLAST of HG10022130 vs. NCBI nr
Match: KAG6578629.1 (hypothetical protein SDJN03_23077, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 193.0 bits (489), Expect = 1.7e-45
Identity = 97/144 (67.36%), Postives = 110/144 (76.39%), Query Frame = 0


Query: 1   MAFSNSKFLTIFLLFCSLLHLGFANEEVVDNPIAQSEIVGQRLPYVQDCCNYCHTGTCCG 60
           MAFS SKF+T+FLLFC+LLHLGFANE+V+D+ +AQSE+VGQRLPY QDCCNY HTG+C G
Sbjct: 1   MAFSKSKFVTLFLLFCTLLHLGFANEQVIDDAVAQSEVVGQRLPYAQDCCNYGHTGSCVG 60

Query: 61  -------GGDY--CKPPCLQNGCGCVENPSGRCCSGSICRPSCPPYQCQGPCPSCSCVRS 120
                  GGDY    P C+QNGCGCVENPS  CC+GS+  PS P  Q QGPCP C CVRS
Sbjct: 61  SPNCCGSGGDYGNSPPHCVQNGCGCVENPSNNCCAGSVGHPSPPSCQWQGPCPCCGCVRS 120

Query: 121 NVKVEGQHESNSDHPSSESKPPKH 136
           NVKVE Q ES+S  PSSES  P H
Sbjct: 121 NVKVEEQDESDSVRPSSESMTPMH 144

[Close]

BLAST of HG10022130 vs. NCBI nr
Match: KAA0037475.1 (protein kinase domain containing protein [Cucumis melo var. makuwa] >TYK01951.1 protein kinase domain containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 133.7 bits (335), Expect = 1.2e-27
Identity = 85/187 (45.45%), Postives = 94/187 (50.27%), Query Frame = 0


Query: 1   MAFSNSKFLTIFLLFCSLLHLGFANEEVVDNPIAQSEIVGQRLPYVQDCCNYCHTGTCCG 60
           M FS SKFLTIFLLFC+LLHLGFA EE +D+ IAQ EI GQ LPY  DCC+ CH+GTC G
Sbjct: 1   MTFSKSKFLTIFLLFCTLLHLGFAIEEAMDDLIAQREI-GQHLPYAPDCCSSCHSGTCGG 60

Query: 61  GGDYCKPPCLQNGCGCVENPSGRCCSGSICRPSCPPYQCQGP------------------ 120
           GG    PP      GCV+NP  RCCSGS C P+ P   CQGP                  
Sbjct: 61  GGGCDIPP-----YGCVDNPP-RCCSGSSCHPTPPSVPCQGPCQGPCQEPCQGPCQGPCQ 120

Query: 121 ----------------------------------CPSCSCVRSNVKVEGQHESNSDHPSS 136
                                             C SC C R N  VE QHESN +HP S
Sbjct: 121 GPCQGQCQGSCQGQCQGSCQGQCPGSCQGQCQGSCQSCGCGRGNASVEEQHESNFNHPRS 180

[Close]

BLAST of HG10022130 vs. ExPASy TrEMBL
Match: A0A6J1JX01 (uncharacterized protein LOC111489599 OS=Cucurbita maxima OX=3661 GN=LOC111489599 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 6.3e-46
Identity = 98/144 (68.06%), Postives = 110/144 (76.39%), Query Frame = 0


Query: 1   MAFSNSKFLTIFLLFCSLLHLGFANEEVVDNPIAQSEIVGQRLPYVQDCCNYCHTGTCCG 60
           MA S SKFLT+FLLFC+LLHLGFANE+V+D+ IAQSE+VGQRLPY QDCCNY HTG+C G
Sbjct: 18  MAISKSKFLTLFLLFCTLLHLGFANEQVIDDAIAQSEVVGQRLPYAQDCCNYGHTGSCVG 77

Query: 61  -------GGDY--CKPPCLQNGCGCVENPSGRCCSGSICRPSCPPYQCQGPCPSCSCVRS 120
                  GGDY    P C+QNGCGCVENPS  CC+GS+  PS P  Q QGP P C CVR+
Sbjct: 78  SPNCCGNGGDYDNSPPHCVQNGCGCVENPSNNCCAGSVGHPSPPSCQWQGPSPCCGCVRT 137

Query: 121 NVKVEGQHESNSDHPSSESKPPKH 136
           NVKVE Q+ESNSD PSSES  P H
Sbjct: 138 NVKVEEQNESNSDRPSSESMTPMH 161

[Close]

BLAST of HG10022130 vs. ExPASy TrEMBL
Match: A0A5D3BQA3 (Protein kinase domain containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold808G00430 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 5.9e-28
Identity = 85/187 (45.45%), Postives = 94/187 (50.27%), Query Frame = 0


Query: 1   MAFSNSKFLTIFLLFCSLLHLGFANEEVVDNPIAQSEIVGQRLPYVQDCCNYCHTGTCCG 60
           M FS SKFLTIFLLFC+LLHLGFA EE +D+ IAQ EI GQ LPY  DCC+ CH+GTC G
Sbjct: 1   MTFSKSKFLTIFLLFCTLLHLGFAIEEAMDDLIAQREI-GQHLPYAPDCCSSCHSGTCGG 60

Query: 61  GGDYCKPPCLQNGCGCVENPSGRCCSGSICRPSCPPYQCQGP------------------ 120
           GG    PP      GCV+NP  RCCSGS C P+ P   CQGP                  
Sbjct: 61  GGGCDIPP-----YGCVDNPP-RCCSGSSCHPTPPSVPCQGPCQGPCQEPCQGPCQGPCQ 120

Query: 121 ----------------------------------CPSCSCVRSNVKVEGQHESNSDHPSS 136
                                             C SC C R N  VE QHESN +HP S
Sbjct: 121 GPCQGQCQGSCQGQCQGSCQGQCPGSCQGQCQGSCQSCGCGRGNASVEEQHESNFNHPRS 180

[Close]

BLAST of HG10022130 vs. ExPASy TrEMBL
Match: A0A0A0KX60 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G631470 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.9e-18
Identity = 49/68 (72.06%), Postives = 53/68 (77.94%), Query Frame = 0


Query: 1  MAFSNSKFLTIFLLFCSLLHLGFANEEVVDNPIAQSEIVGQRLPYVQDCCNYCHTGTCCG 60
          M  S SKFLTIFLLFC+LLHLGFA EE +DNPIAQSEI GQ LPY  DCC+ CH+GTCC 
Sbjct: 1  MTISKSKFLTIFLLFCTLLHLGFAIEEAMDNPIAQSEI-GQHLPYAPDCCSSCHSGTCCS 60

Query: 61 GGDYCKPP 69
          GG    PP
Sbjct: 61 GGSSDIPP 67

The following BLAST results are available for this feature:

BLAST of HG10022130 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022993676.1	1.3e-45	68.06	uncharacterized protein LOC111489599 [Cucurbita maxima]	[more]
KAG6578629.1	1.7e-45	67.36	hypothetical protein SDJN03_23077, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0037475.1	1.2e-27	45.45	protein kinase domain containing protein [Cucumis melo var. makuwa] >TYK01951.1 ...	[more]

BLAST of HG10022130 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10022130 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JX01	6.3e-46	68.06	uncharacterized protein LOC111489599 OS=Cucurbita maxima OX=3661 GN=LOC111489599...	[more]
A0A5D3BQA3	5.9e-28	45.45	Protein kinase domain containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A0A0KX60	1.9e-18	72.06	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G631470 PE=4 SV=1	[more]

BLAST of HG10022130 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10022130.1	HG10022130.1	mRNA