HG10022070 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10022070
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	E3 ubiquitin-protein ligase RING1-like
Location	Chr05: 20475342 .. 20476043 (-)
RNA-Seq Expression	HG10022070
Synteny	HG10022070

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCGATTCTGACTCTTCTCCCTCTCCTGCGCCCGCGCCGCCGCCGCCTCGCACCCTCTCTATGCTTCTCCCTTTTCTTCTTGGCCTTGCCCGAACCACCACCGGATCCAACCTCAACCAGATCGTTGTTCTCGACCATGCTGCCCGAACGGTTGTCGTTTTTGAAGGTCACGTTCTTGACTCTCTCCTCCGTGACTTATCGGAGAAATCCGGGCCTTTGCCGGCGTCCAAGGCTTCGATCGATGCGATGCCGAGAGTTGGGGTTACCGAATTGGGGATGGATTGTGCGATATGCCTGGACGGATTTGAAGTCGATGAGGAAGCCAGGGAGATGCCCTGTAAACATATGTATCATTCGGATTGTATTGAGAAATGGTTGAGGGTTCGTGGAACGTGTCCGGTTTGTCGGTTCGTGATGCCGGTGGACGATCAGGAAGGGAAGAAGGACGGTGGTGGTGGTGATGATGAAGATGAAAATATGGAAGGCGGAGAAGGCCGAGTGGTTGTAGTCAATCTGTGGGTTAACGATGGTGAAGGTGAACCGATGGATGTGGAATCGGGCTTGGAGCATGGATCGGAGGACTCCGATTCAGAATCGCAAGATGAAATTATGGTTGAAGTTGATGGCTCATCAACGCAAGAACAAGATCCGAGTTCTGAAGATTCTTCCTCATTTTCATTTTCGTCATTTTTCAACTAG

mRNA sequence

ATGTCCGATTCTGACTCTTCTCCCTCTCCTGCGCCCGCGCCGCCGCCGCCTCGCACCCTCTCTATGCTTCTCCCTTTTCTTCTTGGCCTTGCCCGAACCACCACCGGATCCAACCTCAACCAGATCGTTGTTCTCGACCATGCTGCCCGAACGGTTGTCGTTTTTGAAGGTCACGTTCTTGACTCTCTCCTCCGTGACTTATCGGAGAAATCCGGGCCTTTGCCGGCGTCCAAGGCTTCGATCGATGCGATGCCGAGAGTTGGGGTTACCGAATTGGGGATGGATTGTGCGATATGCCTGGACGGATTTGAAGTCGATGAGGAAGCCAGGGAGATGCCCTGTAAACATATGTATCATTCGGATTGTATTGAGAAATGGTTGAGGGTTCGTGGAACGTGTCCGGTTTGTCGGTTCGTGATGCCGGTGGACGATCAGGAAGGGAAGAAGGACGGTGGTGGTGGTGATGATGAAGATGAAAATATGGAAGGCGGAGAAGGCCGAGTGGTTGTAGTCAATCTGTGGGTTAACGATGGTGAAGGTGAACCGATGGATGTGGAATCGGGCTTGGAGCATGGATCGGAGGACTCCGATTCAGAATCGCAAGATGAAATTATGGTTGAAGTTGATGGCTCATCAACGCAAGAACAAGATCCGAGTTCTGAAGATTCTTCCTCATTTTCATTTTCGTCATTTTTCAACTAG

Coding sequence (CDS)

ATGTCCGATTCTGACTCTTCTCCCTCTCCTGCGCCCGCGCCGCCGCCGCCTCGCACCCTCTCTATGCTTCTCCCTTTTCTTCTTGGCCTTGCCCGAACCACCACCGGATCCAACCTCAACCAGATCGTTGTTCTCGACCATGCTGCCCGAACGGTTGTCGTTTTTGAAGGTCACGTTCTTGACTCTCTCCTCCGTGACTTATCGGAGAAATCCGGGCCTTTGCCGGCGTCCAAGGCTTCGATCGATGCGATGCCGAGAGTTGGGGTTACCGAATTGGGGATGGATTGTGCGATATGCCTGGACGGATTTGAAGTCGATGAGGAAGCCAGGGAGATGCCCTGTAAACATATGTATCATTCGGATTGTATTGAGAAATGGTTGAGGGTTCGTGGAACGTGTCCGGTTTGTCGGTTCGTGATGCCGGTGGACGATCAGGAAGGGAAGAAGGACGGTGGTGGTGGTGATGATGAAGATGAAAATATGGAAGGCGGAGAAGGCCGAGTGGTTGTAGTCAATCTGTGGGTTAACGATGGTGAAGGTGAACCGATGGATGTGGAATCGGGCTTGGAGCATGGATCGGAGGACTCCGATTCAGAATCGCAAGATGAAATTATGGTTGAAGTTGATGGCTCATCAACGCAAGAACAAGATCCGAGTTCTGAAGATTCTTCCTCATTTTCATTTTCGTCATTTTTCAACTAG

Protein sequence

MSDSDSSPSPAPAPPPPRTLSMLLPFLLGLARTTTGSNLNQIVVLDHAARTVVVFEGHVLDSLLRDLSEKSGPLPASKASIDAMPRVGVTELGMDCAICLDGFEVDEEAREMPCKHMYHSDCIEKWLRVRGTCPVCRFVMPVDDQEGKKDGGGGDDEDENMEGGEGRVVVVNLWVNDGEGEPMDVESGLEHGSEDSDSESQDEIMVEVDGSSTQEQDPSSEDSSSFSFSSFFN

Homology

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BLAST of HG10022070 vs. NCBI nr
Match: KAA0039492.1 (E3 ubiquitin-protein ligase RING1-like [Cucumis melo var. makuwa] >TYK15247.1 E3 ubiquitin-protein ligase RING1-like [Cucumis melo var. makuwa])

HSP 1 Score: 403.3 bits (1035), Expect = 1.4e-108
Identity = 220/239 (92.05%), Postives = 225/239 (94.14%), Query Frame = 0


Query: 1   MSDSDSSPSPAPAPPPPRTLSMLLPFLLGLARTTTGSNLNQIVVLDHAARTVVVFEGHVL 60
           MSDSDSSPSP+P PPPPRTLSMLLPFLLGLARTTTGSNLNQIVVLDHAARTVVVFEGHVL
Sbjct: 1   MSDSDSSPSPSP-PPPPRTLSMLLPFLLGLARTTTGSNLNQIVVLDHAARTVVVFEGHVL 60

Query: 61  DSLLRDLSEKSGPLPASKASIDAMPRVGVTELGMDCAICLDGFEVDEEAREMPCKHMYHS 120
           DSLLRDLSEKSGPLPASKASIDAMPRVGVTELG DCAICLDGFEV EEAREMPCKHMYHS
Sbjct: 61  DSLLRDLSEKSGPLPASKASIDAMPRVGVTELGTDCAICLDGFEVAEEAREMPCKHMYHS 120

Query: 121 DCIEKWLRVRGTCPVCRFVMPVDDQEGKKDG--GGGD-DEDENMEG---GEGRVVVVNLW 180
           DCIEKWL VRGTCPVCRFVMPVDD+  +KDG  GGGD +EDE+MEG   GEGRVVVVNLW
Sbjct: 121 DCIEKWLNVRGTCPVCRFVMPVDDR--RKDGGVGGGDVEEDEDMEGGESGEGRVVVVNLW 180

Query: 181 VNDGEGEPMDVESGLEHGSEDSDSESQDEIMVEVDGSSTQEQDPSSEDSSSFSFSSFFN 234
           VND  GEPMDVESGLEHGSEDSDSESQDEIMVEVDGSSTQEQDPSSEDSSSFSFSSFFN
Sbjct: 181 VND--GEPMDVESGLEHGSEDSDSESQDEIMVEVDGSSTQEQDPSSEDSSSFSFSSFFN 234

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BLAST of HG10022070 vs. NCBI nr
Match: XP_011656279.1 (E3 ubiquitin-protein ligase MPSR1 [Cucumis sativus] >KGN52465.1 hypothetical protein Csa_008626 [Cucumis sativus])

HSP 1 Score: 401.7 bits (1031), Expect = 4.2e-108
Identity = 219/245 (89.39%), Postives = 226/245 (92.24%), Query Frame = 0


Query: 1   MSDSDSSPSPAPAPPPPRTLSMLLPFLLGLARTTTGSNLNQIVVLDHAARTVVVFEGHVL 60
           MSDSDSSPSP+P PPPPRTLSMLLPFLLGLARTTTGSNLNQIVVLDHAARTVVVFEGHVL
Sbjct: 1   MSDSDSSPSPSP-PPPPRTLSMLLPFLLGLARTTTGSNLNQIVVLDHAARTVVVFEGHVL 60

Query: 61  DSLLRDLSEKSGPLPASKASIDAMPRVGVTELGMDCAICLDGFEVDEEAREMPCKHMYHS 120
           DSLLRDLSEKSGPLPASKASIDAMPRVGVTELGMDCAICLDGFEVDEEAREMPCKHMYHS
Sbjct: 61  DSLLRDLSEKSGPLPASKASIDAMPRVGVTELGMDCAICLDGFEVDEEAREMPCKHMYHS 120

Query: 121 DCIEKWLRVRGTCPVCRFVMPVDDQEGKKDGGGG----DDEDENM------EGGEGRVVV 180
           DCIEKWL VRGTCPVCRF MPVDD+  +KDGGGG    ++E+E+M      EGGEGRVVV
Sbjct: 121 DCIEKWLNVRGTCPVCRFAMPVDDR--RKDGGGGGGGDEEEEEDMEGGEGGEGGEGRVVV 180

Query: 181 VNLWVNDGEGEPMDVESGLEHGSEDSDSESQDEIMVEVDGSST--QEQDPSSEDSSSFSF 234
           VNLWVND  GEPMDVESGLEHGSEDSDSESQDEIMVEVDGSST  QEQDPSSEDSSSFSF
Sbjct: 181 VNLWVND--GEPMDVESGLEHGSEDSDSESQDEIMVEVDGSSTQEQEQDPSSEDSSSFSF 240

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BLAST of HG10022070 vs. NCBI nr
Match: XP_008459699.1 (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis melo])

HSP 1 Score: 381.3 bits (978), Expect = 5.8e-102
Identity = 206/225 (91.56%), Postives = 211/225 (93.78%), Query Frame = 0


Query: 1   MSDSDSSPSPAPAPPPPRTLSMLLPFLLGLARTTTGSNLNQIVVLDHAARTVVVFEGHVL 60
           MSDSDSSPSP+P PPPPRTLSMLLPFLLGLARTTTGSNLNQIVVLDHAARTVVVFEGHVL
Sbjct: 1   MSDSDSSPSPSP-PPPPRTLSMLLPFLLGLARTTTGSNLNQIVVLDHAARTVVVFEGHVL 60

Query: 61  DSLLRDLSEKSGPLPASKASIDAMPRVGVTELGMDCAICLDGFEVDEEAREMPCKHMYHS 120
           DSLLRDLSEKSGPLPASKASIDAMPRVGVTELG DCAICLDGFEV EEAREMPCKHMYHS
Sbjct: 61  DSLLRDLSEKSGPLPASKASIDAMPRVGVTELGTDCAICLDGFEVAEEAREMPCKHMYHS 120

Query: 121 DCIEKWLRVRGTCPVCRFVMPVDDQEGKKDG--GGGD-DEDENMEG---GEGRVVVVNLW 180
           DCIEKWL VRGTCPVCRFVMPVDD+  +KDG  GGGD +EDE+MEG   GEGRVVVVNLW
Sbjct: 121 DCIEKWLNVRGTCPVCRFVMPVDDR--RKDGGVGGGDVEEDEDMEGGESGEGRVVVVNLW 180

Query: 181 VNDGEGEPMDVESGLEHGSEDSDSESQDEIMVEVDGSSTQEQDPS 220
           VND  GEPMDVESGLEHGSEDSDSESQDEIMVEVDGSSTQEQDPS
Sbjct: 181 VND--GEPMDVESGLEHGSEDSDSESQDEIMVEVDGSSTQEQDPS 220

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BLAST of HG10022070 vs. NCBI nr
Match: XP_022993365.1 (E3 ubiquitin-protein ligase RNF181-like [Cucurbita maxima])

HSP 1 Score: 380.2 bits (975), Expect = 1.3e-101
Identity = 203/236 (86.02%), Postives = 211/236 (89.41%), Query Frame = 0


Query: 1   MSDSDSSPSPAPAPPPPRTLSMLLPFLLGLARTTTGSNLNQIVVLDHAARTVVVFEGHVL 60
           MSDSDSS SP P+ PPPR+LSMLLPFLLGLARTT GS+LNQIVVLDHAARTVVVFEGHVL
Sbjct: 1   MSDSDSSSSPPPSLPPPRSLSMLLPFLLGLARTTPGSHLNQIVVLDHAARTVVVFEGHVL 60

Query: 61  DSLLRDLSEKSGPLPASKASIDAMPRVGVTELGMDCAICLDGFEVDEEAREMPCKHMYHS 120
           +S LRDLSEKSGPLPASKASIDAMPRVG+TELGMDCAICLDGFEV  EAREMPCKHMYHS
Sbjct: 61  ESFLRDLSEKSGPLPASKASIDAMPRVGITELGMDCAICLDGFEVGAEAREMPCKHMYHS 120

Query: 121 DCIEKWLRVRGTCPVCRFVMPVDDQEGKKDGGGGDDEDENMEGGEGRVVVVNLWVNDGEG 180
           DCIEKWLRVRGTCP+CRF MPVDDQEGKK      D+DE+MEG EGRVVVVNLWVND  G
Sbjct: 121 DCIEKWLRVRGTCPICRFTMPVDDQEGKK------DDDEDMEGDEGRVVVVNLWVND--G 180

Query: 181 EPMD---VESGLEHGSEDSDSESQDEIMVEVDGSSTQEQDPSSEDSSSFSFSSFFN 234
           EPMD   VESGL HGS DSDSES DEI VEVD SSTQEQDPSSEDSSSFSFSSFFN
Sbjct: 181 EPMDVESVESGLGHGSGDSDSESHDEITVEVDASSTQEQDPSSEDSSSFSFSSFFN 228

[Close]

BLAST of HG10022070 vs. NCBI nr
Match: XP_023551536.1 (E3 ubiquitin-protein ligase RNF181-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 379.0 bits (972), Expect = 2.9e-101
Identity = 202/236 (85.59%), Postives = 211/236 (89.41%), Query Frame = 0


Query: 1   MSDSDSSPSPAPAPPPPRTLSMLLPFLLGLARTTTGSNLNQIVVLDHAARTVVVFEGHVL 60
           MSDSDSS SP P+ PPPR+LSMLLPFLLGLARTT GS+LNQIVVLDHAARTVVVFEGHVL
Sbjct: 1   MSDSDSSSSPPPSLPPPRSLSMLLPFLLGLARTTPGSHLNQIVVLDHAARTVVVFEGHVL 60

Query: 61  DSLLRDLSEKSGPLPASKASIDAMPRVGVTELGMDCAICLDGFEVDEEAREMPCKHMYHS 120
           +S LRDLSEKSGPLPASKASIDAMPRVG+TELGMDCAICLDGFEV  EAREMPCKH+YHS
Sbjct: 61  ESFLRDLSEKSGPLPASKASIDAMPRVGITELGMDCAICLDGFEVGAEAREMPCKHLYHS 120

Query: 121 DCIEKWLRVRGTCPVCRFVMPVDDQEGKKDGGGGDDEDENMEGGEGRVVVVNLWVNDGEG 180
           DCIEKWLRVRGTCP+CRF MPVDDQEGKK      D+DE+MEG EGRVVVVNLWVND  G
Sbjct: 121 DCIEKWLRVRGTCPICRFTMPVDDQEGKK------DDDEDMEGDEGRVVVVNLWVND--G 180

Query: 181 EPMD---VESGLEHGSEDSDSESQDEIMVEVDGSSTQEQDPSSEDSSSFSFSSFFN 234
           EPMD   VESGL HGS DSDSES DEI VEVD SSTQEQDPSSEDSSSFSFSSFFN
Sbjct: 181 EPMDVESVESGLGHGSGDSDSESHDEITVEVDASSTQEQDPSSEDSSSFSFSSFFN 228

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BLAST of HG10022070 vs. ExPASy Swiss-Prot
Match: Q9LQX2 (E3 ubiquitin-protein ligase MPSR1 OS=Arabidopsis thaliana OX=3702 GN=MPSR1 PE=1 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.0e-24
Identity = 64/150 (42.67%), Postives = 91/150 (60.67%), Query Frame = 0


Query: 18  RTLSMLLPFLLGLARTTT--------GSNLNQIVVLDHAARTVVVFEGHV-LDSLLRDL- 77
           R L + LPFLLG +   +         S+  +I++++   + ++V EG   ++ LLR L 
Sbjct: 24  RDLYLFLPFLLGFSDQESSNGDDDDVASSRERIILVNPFTQGMIVLEGSSGMNPLLRSLL 83

Query: 78  -SEKSGPLPASKASIDAMPRVGVTELGMDCAICLDGFEVDEEAREMPCKHMYHSDCIEKW 137
            S + G  PASKASIDAMP V +     +C ICL+ ++ +E  +EMPCKH +H  CIEKW
Sbjct: 84  ESREEGRPPASKASIDAMPIVEIDGCEGECVICLEEWKSEETVKEMPCKHRFHGGCIEKW 143

Query: 138 LRVRGTCPVCRFVMPVD-DQEGKKDGGGGD 156
           L   G+CPVCR+ MPVD D+ GKK   G +
Sbjct: 144 LGFHGSCPVCRYEMPVDGDEIGKKRNDGNE 173

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BLAST of HG10022070 vs. ExPASy Swiss-Prot
Match: P0CH30 (E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 4.4e-20
Identity = 49/127 (38.58%), Postives = 77/127 (60.63%), Query Frame = 0


Query: 55  FEGHVLDSLLRDLSE----KSGPLPASKASIDAMPRVGVTELGMD-----CAICLDGFEV 114
           F G  L+ L++ L+E    + G  PASK++I+A+P V +T+  ++     CA+C+D FE 
Sbjct: 174 FIGPGLEQLIQQLAENDPNRYGTPPASKSAIEALPLVNITKSNLNSEFNQCAVCMDDFEE 233

Query: 115 DEEAREMPCKHMYHSDCIEKWLRVRGTCPVCRFVMPVDDQE------GKKDGGGGDDEDE 167
             EA++MPCKH+YH DC+  WL +  +CPVCR  +P DD +      G +   GG+D D 
Sbjct: 234 GTEAKQMPCKHLYHKDCLLPWLELHNSCPVCRHELPTDDPDYERRVRGAQGTSGGNDGDN 293

[Close]

BLAST of HG10022070 vs. ExPASy Swiss-Prot
Match: Q8LPN7 (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 7.1e-18
Identity = 59/163 (36.20%), Postives = 85/163 (52.15%), Query Frame = 0


Query: 55  FEGHVLDSLLRDLSE----KSGPLPASKASIDAMPRVGVTELGM-----DCAICLDGFEV 114
           F G  L+ L++ L+E    + G  PASK++IDA+P V VT+  +      CA+C+D FE 
Sbjct: 166 FFGPGLEQLIQQLAENDPNRYGTPPASKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFED 225

Query: 115 DEEAREMPCKHMYHSDCIEKWLRVRGTCPVCRFVMPVD--DQEGKKDGG-GGDDEDENME 174
             + ++MPCKH++H DC+  WL +  +CPVCRF +P D  D E +  G  G  D   ++E
Sbjct: 226 GSDVKQMPCKHVFHQDCLLPWLELHNSCPVCRFELPTDDPDYENRSQGSQGSGDGQGSVE 285

Query: 175 GGEGRVVVVNL-W-------VNDGEGEPMDVESGLEHGSEDSD 198
           G +     + L W          G G P      LE   ED D
Sbjct: 286 GQQTPRFSIQLPWPFRRQDGSGSGSGAPGTGGGNLETRGEDLD 328

[Close]

BLAST of HG10022070 vs. ExPASy Swiss-Prot
Match: Q9SNB6 (E3 ubiquitin-protein ligase RDUF1 OS=Arabidopsis thaliana OX=3702 GN=RDUF1 PE=1 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 2.7e-17
Identity = 52/140 (37.14%), Postives = 75/140 (53.57%), Query Frame = 0


Query: 54  VFEGHVLDSLLRDLSE---------KSGPLPASKASIDAMPRVGV----TELGMDCAICL 113
           +  G   + LL  LS+         +SG  PASK++I+++PRV +    T+   +CA+C 
Sbjct: 160 ILMGSGFERLLEQLSQIEASGNGIGRSGNPPASKSAIESLPRVEISDCHTKAEANCAVCT 219

Query: 114 DGFEVDEEAREMPCKHMYHSDCIEKWLRVRGTCPVCRFVMPVDD-QEGKKDGGGGDDEDE 173
           + FE   E REMPCKH++H DCI  WL +R +CPVCRF +P D  Q   ++         
Sbjct: 220 EVFEAGIEGREMPCKHIFHGDCIVPWLSIRNSCPVCRFELPSDPIQRSNEEEHAVGMTIW 279

Query: 174 NMEGGEGRVVVVNLWVNDGE 180
            + GG   V   N  V +GE
Sbjct: 280 RLPGGGFAVGRFNAGVREGE 299

[Close]

BLAST of HG10022070 vs. ExPASy Swiss-Prot
Match: Q94AK4 (E3 ubiquitin-protein ligase RZF1 OS=Arabidopsis thaliana OX=3702 GN=RZF1 PE=1 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 2.3e-16
Identity = 47/128 (36.72%), Postives = 65/128 (50.78%), Query Frame = 0


Query: 55  FEGHVLDSLLRDLSEKS---GPLPASKASIDAMPRVGVTELGM-----DCAICLDGFEVD 114
           F G  L+ L+  LS  +   GP PA K+SIDA+P + +T+  +      C +C D FE+ 
Sbjct: 137 FFGPGLEELIEQLSSGTHHRGPPPAPKSSIDALPTIKITQKHLKSSDSHCPVCKDEFELK 196

Query: 115 EEAREMPCKHMYHSDCIEKWLRVRGTCPVCRFVMPVDDQEGKKDGGGGDDEDENMEGGEG 174
            EA++MPC H+YHSDCI  WL    +CPVCR  +P             +      E    
Sbjct: 197 SEAKQMPCHHIYHSDCIVPWLVQHNSCPVCRKELPSRGSSSSTQ-SSQNRSTNGRENSRR 256

[Close]

BLAST of HG10022070 vs. ExPASy TrEMBL
Match: A0A5A7T7P7 (E3 ubiquitin-protein ligase RING1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold892G00210 PE=4 SV=1)

HSP 1 Score: 403.3 bits (1035), Expect = 6.9e-109
Identity = 220/239 (92.05%), Postives = 225/239 (94.14%), Query Frame = 0


Query: 1   MSDSDSSPSPAPAPPPPRTLSMLLPFLLGLARTTTGSNLNQIVVLDHAARTVVVFEGHVL 60
           MSDSDSSPSP+P PPPPRTLSMLLPFLLGLARTTTGSNLNQIVVLDHAARTVVVFEGHVL
Sbjct: 1   MSDSDSSPSPSP-PPPPRTLSMLLPFLLGLARTTTGSNLNQIVVLDHAARTVVVFEGHVL 60

Query: 61  DSLLRDLSEKSGPLPASKASIDAMPRVGVTELGMDCAICLDGFEVDEEAREMPCKHMYHS 120
           DSLLRDLSEKSGPLPASKASIDAMPRVGVTELG DCAICLDGFEV EEAREMPCKHMYHS
Sbjct: 61  DSLLRDLSEKSGPLPASKASIDAMPRVGVTELGTDCAICLDGFEVAEEAREMPCKHMYHS 120

Query: 121 DCIEKWLRVRGTCPVCRFVMPVDDQEGKKDG--GGGD-DEDENMEG---GEGRVVVVNLW 180
           DCIEKWL VRGTCPVCRFVMPVDD+  +KDG  GGGD +EDE+MEG   GEGRVVVVNLW
Sbjct: 121 DCIEKWLNVRGTCPVCRFVMPVDDR--RKDGGVGGGDVEEDEDMEGGESGEGRVVVVNLW 180

Query: 181 VNDGEGEPMDVESGLEHGSEDSDSESQDEIMVEVDGSSTQEQDPSSEDSSSFSFSSFFN 234
           VND  GEPMDVESGLEHGSEDSDSESQDEIMVEVDGSSTQEQDPSSEDSSSFSFSSFFN
Sbjct: 181 VND--GEPMDVESGLEHGSEDSDSESQDEIMVEVDGSSTQEQDPSSEDSSSFSFSSFFN 234

[Close]

BLAST of HG10022070 vs. ExPASy TrEMBL
Match: A0A0A0KS87 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G636570 PE=4 SV=1)

HSP 1 Score: 401.7 bits (1031), Expect = 2.0e-108
Identity = 219/245 (89.39%), Postives = 226/245 (92.24%), Query Frame = 0


Query: 1   MSDSDSSPSPAPAPPPPRTLSMLLPFLLGLARTTTGSNLNQIVVLDHAARTVVVFEGHVL 60
           MSDSDSSPSP+P PPPPRTLSMLLPFLLGLARTTTGSNLNQIVVLDHAARTVVVFEGHVL
Sbjct: 1   MSDSDSSPSPSP-PPPPRTLSMLLPFLLGLARTTTGSNLNQIVVLDHAARTVVVFEGHVL 60

Query: 61  DSLLRDLSEKSGPLPASKASIDAMPRVGVTELGMDCAICLDGFEVDEEAREMPCKHMYHS 120
           DSLLRDLSEKSGPLPASKASIDAMPRVGVTELGMDCAICLDGFEVDEEAREMPCKHMYHS
Sbjct: 61  DSLLRDLSEKSGPLPASKASIDAMPRVGVTELGMDCAICLDGFEVDEEAREMPCKHMYHS 120

Query: 121 DCIEKWLRVRGTCPVCRFVMPVDDQEGKKDGGGG----DDEDENM------EGGEGRVVV 180
           DCIEKWL VRGTCPVCRF MPVDD+  +KDGGGG    ++E+E+M      EGGEGRVVV
Sbjct: 121 DCIEKWLNVRGTCPVCRFAMPVDDR--RKDGGGGGGGDEEEEEDMEGGEGGEGGEGRVVV 180

Query: 181 VNLWVNDGEGEPMDVESGLEHGSEDSDSESQDEIMVEVDGSST--QEQDPSSEDSSSFSF 234
           VNLWVND  GEPMDVESGLEHGSEDSDSESQDEIMVEVDGSST  QEQDPSSEDSSSFSF
Sbjct: 181 VNLWVND--GEPMDVESGLEHGSEDSDSESQDEIMVEVDGSSTQEQEQDPSSEDSSSFSF 240

[Close]

BLAST of HG10022070 vs. ExPASy TrEMBL
Match: A0A1S3CC03 (E3 ubiquitin-protein ligase RING1-like OS=Cucumis melo OX=3656 GN=LOC103498739 PE=4 SV=1)

HSP 1 Score: 381.3 bits (978), Expect = 2.8e-102
Identity = 206/225 (91.56%), Postives = 211/225 (93.78%), Query Frame = 0


Query: 1   MSDSDSSPSPAPAPPPPRTLSMLLPFLLGLARTTTGSNLNQIVVLDHAARTVVVFEGHVL 60
           MSDSDSSPSP+P PPPPRTLSMLLPFLLGLARTTTGSNLNQIVVLDHAARTVVVFEGHVL
Sbjct: 1   MSDSDSSPSPSP-PPPPRTLSMLLPFLLGLARTTTGSNLNQIVVLDHAARTVVVFEGHVL 60

Query: 61  DSLLRDLSEKSGPLPASKASIDAMPRVGVTELGMDCAICLDGFEVDEEAREMPCKHMYHS 120
           DSLLRDLSEKSGPLPASKASIDAMPRVGVTELG DCAICLDGFEV EEAREMPCKHMYHS
Sbjct: 61  DSLLRDLSEKSGPLPASKASIDAMPRVGVTELGTDCAICLDGFEVAEEAREMPCKHMYHS 120

Query: 121 DCIEKWLRVRGTCPVCRFVMPVDDQEGKKDG--GGGD-DEDENMEG---GEGRVVVVNLW 180
           DCIEKWL VRGTCPVCRFVMPVDD+  +KDG  GGGD +EDE+MEG   GEGRVVVVNLW
Sbjct: 121 DCIEKWLNVRGTCPVCRFVMPVDDR--RKDGGVGGGDVEEDEDMEGGESGEGRVVVVNLW 180

Query: 181 VNDGEGEPMDVESGLEHGSEDSDSESQDEIMVEVDGSSTQEQDPS 220
           VND  GEPMDVESGLEHGSEDSDSESQDEIMVEVDGSSTQEQDPS
Sbjct: 181 VND--GEPMDVESGLEHGSEDSDSESQDEIMVEVDGSSTQEQDPS 220

[Close]

BLAST of HG10022070 vs. ExPASy TrEMBL
Match: A0A6J1JYB9 (E3 ubiquitin-protein ligase RNF181-like OS=Cucurbita maxima OX=3661 GN=LOC111489408 PE=4 SV=1)

HSP 1 Score: 380.2 bits (975), Expect = 6.3e-102
Identity = 203/236 (86.02%), Postives = 211/236 (89.41%), Query Frame = 0


Query: 1   MSDSDSSPSPAPAPPPPRTLSMLLPFLLGLARTTTGSNLNQIVVLDHAARTVVVFEGHVL 60
           MSDSDSS SP P+ PPPR+LSMLLPFLLGLARTT GS+LNQIVVLDHAARTVVVFEGHVL
Sbjct: 1   MSDSDSSSSPPPSLPPPRSLSMLLPFLLGLARTTPGSHLNQIVVLDHAARTVVVFEGHVL 60

Query: 61  DSLLRDLSEKSGPLPASKASIDAMPRVGVTELGMDCAICLDGFEVDEEAREMPCKHMYHS 120
           +S LRDLSEKSGPLPASKASIDAMPRVG+TELGMDCAICLDGFEV  EAREMPCKHMYHS
Sbjct: 61  ESFLRDLSEKSGPLPASKASIDAMPRVGITELGMDCAICLDGFEVGAEAREMPCKHMYHS 120

Query: 121 DCIEKWLRVRGTCPVCRFVMPVDDQEGKKDGGGGDDEDENMEGGEGRVVVVNLWVNDGEG 180
           DCIEKWLRVRGTCP+CRF MPVDDQEGKK      D+DE+MEG EGRVVVVNLWVND  G
Sbjct: 121 DCIEKWLRVRGTCPICRFTMPVDDQEGKK------DDDEDMEGDEGRVVVVNLWVND--G 180

Query: 181 EPMD---VESGLEHGSEDSDSESQDEIMVEVDGSSTQEQDPSSEDSSSFSFSSFFN 234
           EPMD   VESGL HGS DSDSES DEI VEVD SSTQEQDPSSEDSSSFSFSSFFN
Sbjct: 181 EPMDVESVESGLGHGSGDSDSESHDEITVEVDASSTQEQDPSSEDSSSFSFSSFFN 228

[Close]

BLAST of HG10022070 vs. ExPASy TrEMBL
Match: A0A6J1FLT0 (E3 ubiquitin-protein ligase RNF181-like OS=Cucurbita moschata OX=3662 GN=LOC111445129 PE=4 SV=1)

HSP 1 Score: 373.2 bits (957), Expect = 7.7e-100
Identity = 200/236 (84.75%), Postives = 209/236 (88.56%), Query Frame = 0


Query: 1   MSDSDSSPSPAPAPPPPRTLSMLLPFLLGLARTTTGSNLNQIVVLDHAARTVVVFEGHVL 60
           MSDSDSS SP P+ PPPR+LSMLLPFLLGLARTT GS+LNQIVVLDHAARTVVVFEG VL
Sbjct: 1   MSDSDSSSSPPPSLPPPRSLSMLLPFLLGLARTTPGSHLNQIVVLDHAARTVVVFEGRVL 60

Query: 61  DSLLRDLSEKSGPLPASKASIDAMPRVGVTELGMDCAICLDGFEVDEEAREMPCKHMYHS 120
           +S LRDLSEKSGPLPASKASIDAMPRVG+TELGMDCAICLDGFEV  EAREMPCKH+YHS
Sbjct: 61  ESFLRDLSEKSGPLPASKASIDAMPRVGITELGMDCAICLDGFEVGAEAREMPCKHLYHS 120

Query: 121 DCIEKWLRVRGTCPVCRFVMPVDDQEGKKDGGGGDDEDENMEGGEGRVVVVNLWVNDGEG 180
           DCIEKWLRVRGTCP+CRF MPVDDQEGKK      D+DE+MEG E RVVVVNLWVND  G
Sbjct: 121 DCIEKWLRVRGTCPICRFTMPVDDQEGKK------DDDEDMEGDEDRVVVVNLWVND--G 180

Query: 181 EPMD---VESGLEHGSEDSDSESQDEIMVEVDGSSTQEQDPSSEDSSSFSFSSFFN 234
           EPMD   VESGL HGS DSDSES DEI VEVD SSTQEQDPSSEDSSSFSFSSFFN
Sbjct: 181 EPMDVESVESGLGHGSGDSDSESHDEITVEVDASSTQEQDPSSEDSSSFSFSSFFN 228

[Close]

BLAST of HG10022070 vs. TAIR 10
Match: AT1G26800.1 (RING/U-box superfamily protein )

HSP 1 Score: 115.2 bits (287), Expect = 7.3e-26
Identity = 64/150 (42.67%), Postives = 91/150 (60.67%), Query Frame = 0


Query: 18  RTLSMLLPFLLGLARTTT--------GSNLNQIVVLDHAARTVVVFEGHV-LDSLLRDL- 77
           R L + LPFLLG +   +         S+  +I++++   + ++V EG   ++ LLR L 
Sbjct: 24  RDLYLFLPFLLGFSDQESSNGDDDDVASSRERIILVNPFTQGMIVLEGSSGMNPLLRSLL 83

Query: 78  -SEKSGPLPASKASIDAMPRVGVTELGMDCAICLDGFEVDEEAREMPCKHMYHSDCIEKW 137
            S + G  PASKASIDAMP V +     +C ICL+ ++ +E  +EMPCKH +H  CIEKW
Sbjct: 84  ESREEGRPPASKASIDAMPIVEIDGCEGECVICLEEWKSEETVKEMPCKHRFHGGCIEKW 143

Query: 138 LRVRGTCPVCRFVMPVD-DQEGKKDGGGGD 156
           L   G+CPVCR+ MPVD D+ GKK   G +
Sbjct: 144 LGFHGSCPVCRYEMPVDGDEIGKKRNDGNE 173

[Close]

BLAST of HG10022070 vs. TAIR 10
Match: AT3G13430.1 (RING/U-box superfamily protein )

HSP 1 Score: 98.6 bits (244), Expect = 7.0e-21
Identity = 41/96 (42.71%), Postives = 64/96 (66.67%), Query Frame = 0


Query: 66  DLSEKSGPLPASKASIDAMPRVGVTELGMDCAICLDGFEVDEEAREMPCKHMYHSDCIEK 125
           DL+ + G  PA+K +++A+  V + +  + C++CLD FE+  EA+EMPCKH +HSDC+  
Sbjct: 195 DLNNRYGTPPATKEAVEALAMVKIEDSLLQCSVCLDDFEIGMEAKEMPCKHKFHSDCLLP 254

Query: 126 WLRVRGTCPVCRFVMPV-DDQEGKKDGGGGDDEDEN 161
           WL +  +CPVCR+++P  DD E K D     ++D N
Sbjct: 255 WLELHSSCPVCRYLLPTGDDDEPKTDAETSRNDDNN 290

[Close]

BLAST of HG10022070 vs. TAIR 10
Match: AT3G13430.2 (RING/U-box superfamily protein )

HSP 1 Score: 98.6 bits (244), Expect = 7.0e-21
Identity = 41/96 (42.71%), Postives = 64/96 (66.67%), Query Frame = 0


Query: 66  DLSEKSGPLPASKASIDAMPRVGVTELGMDCAICLDGFEVDEEAREMPCKHMYHSDCIEK 125
           DL+ + G  PA+K +++A+  V + +  + C++CLD FE+  EA+EMPCKH +HSDC+  
Sbjct: 195 DLNNRYGTPPATKEAVEALAMVKIEDSLLQCSVCLDDFEIGMEAKEMPCKHKFHSDCLLP 254

Query: 126 WLRVRGTCPVCRFVMPV-DDQEGKKDGGGGDDEDEN 161
           WL +  +CPVCR+++P  DD E K D     ++D N
Sbjct: 255 WLELHSSCPVCRYLLPTGDDDEPKTDAETSRNDDNN 290

[Close]

BLAST of HG10022070 vs. TAIR 10
Match: AT3G13430.3 (RING/U-box superfamily protein )

HSP 1 Score: 98.6 bits (244), Expect = 7.0e-21
Identity = 41/96 (42.71%), Postives = 64/96 (66.67%), Query Frame = 0


Query: 66  DLSEKSGPLPASKASIDAMPRVGVTELGMDCAICLDGFEVDEEAREMPCKHMYHSDCIEK 125
           DL+ + G  PA+K +++A+  V + +  + C++CLD FE+  EA+EMPCKH +HSDC+  
Sbjct: 195 DLNNRYGTPPATKEAVEALAMVKIEDSLLQCSVCLDDFEIGMEAKEMPCKHKFHSDCLLP 254

Query: 126 WLRVRGTCPVCRFVMPV-DDQEGKKDGGGGDDEDEN 161
           WL +  +CPVCR+++P  DD E K D     ++D N
Sbjct: 255 WLELHSSCPVCRYLLPTGDDDEPKTDAETSRNDDNN 290

[Close]

BLAST of HG10022070 vs. TAIR 10
Match: AT4G26400.2 (RING/U-box superfamily protein )

HSP 1 Score: 95.9 bits (237), Expect = 4.6e-20
Identity = 43/95 (45.26%), Postives = 60/95 (63.16%), Query Frame = 0


Query: 55  FEGHVLDSLLRDLSE----KSGPLPASKASIDAMPRVGVTELGMDCAICLDGFEVDEEAR 114
           F G  LD LL  L++    + G LPA K  +D +P V ++E  + C+ICLD F+   EA+
Sbjct: 197 FVGSSLDHLLEHLADNDSIRHGSLPARKEVVDNLPTVKISE-SLQCSICLDDFDKGSEAK 256

Query: 115 EMPCKHMYHSDCIEKWLRVRGTCPVCRFVMPVDDQ 146
           EMPCKH +H  CI  WL +  +CPVCR+ +P DD+
Sbjct: 257 EMPCKHKFHIRCIVPWLELHSSCPVCRYELPPDDE 290

The following BLAST results are available for this feature:

BLAST of HG10022070 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0039492.1	1.4e-108	92.05	E3 ubiquitin-protein ligase RING1-like [Cucumis melo var. makuwa] >TYK15247.1 E3...	[more]
XP_011656279.1	4.2e-108	89.39	E3 ubiquitin-protein ligase MPSR1 [Cucumis sativus] >KGN52465.1 hypothetical pro...	[more]
XP_008459699.1	5.8e-102	91.56	PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis melo]	[more]
XP_022993365.1	1.3e-101	86.02	E3 ubiquitin-protein ligase RNF181-like [Cucurbita maxima]	[more]
XP_023551536.1	2.9e-101	85.59	E3 ubiquitin-protein ligase RNF181-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of HG10022070 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LQX2	1.0e-24	42.67	E3 ubiquitin-protein ligase MPSR1 OS=Arabidopsis thaliana OX=3702 GN=MPSR1 PE=1 ...	[more]
P0CH30	4.4e-20	38.58	E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV...	[more]
Q8LPN7	7.1e-18	36.20	E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19...	[more]
Q9SNB6	2.7e-17	37.14	E3 ubiquitin-protein ligase RDUF1 OS=Arabidopsis thaliana OX=3702 GN=RDUF1 PE=1 ...	[more]
Q94AK4	2.3e-16	36.72	E3 ubiquitin-protein ligase RZF1 OS=Arabidopsis thaliana OX=3702 GN=RZF1 PE=1 SV...	[more]

BLAST of HG10022070 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T7P7	6.9e-109	92.05	E3 ubiquitin-protein ligase RING1-like OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A0A0KS87	2.0e-108	89.39	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G636570 P...	[more]
A0A1S3CC03	2.8e-102	91.56	E3 ubiquitin-protein ligase RING1-like OS=Cucumis melo OX=3656 GN=LOC103498739 P...	[more]
A0A6J1JYB9	6.3e-102	86.02	E3 ubiquitin-protein ligase RNF181-like OS=Cucurbita maxima OX=3661 GN=LOC111489...	[more]
A0A6J1FLT0	7.7e-100	84.75	E3 ubiquitin-protein ligase RNF181-like OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]

BLAST of HG10022070 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G26800.1	7.3e-26	42.67	RING/U-box superfamily protein	[more]
AT3G13430.1	7.0e-21	42.71	RING/U-box superfamily protein	[more]
AT3G13430.2	7.0e-21	42.71	RING/U-box superfamily protein	[more]
AT3G13430.3	7.0e-21	42.71	RING/U-box superfamily protein	[more]
AT4G26400.2	4.6e-20	45.26	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 96..136 e-value: 1.1E-8 score: 44.9
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 95..137 e-value: 2.1E-14 score: 53.6
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 96..137 score: 12.518784
IPR011016	Zinc finger, RING-CH-type	SMART	SM00744	ringv_2	coord: 95..137 e-value: 0.0027 score: 12.1
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 64..142 e-value: 6.3E-21 score: 75.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 144..233
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 205..233
None	No IPR available	PANTHER	PTHR15710:SF132	E3 UBIQUITIN-PROTEIN LIGASE MPSR1	coord: 41..151
None	No IPR available	PANTHER	PTHR15710	E3 UBIQUITIN-PROTEIN LIGASE PRAJA	coord: 41..151
None	No IPR available	CDD	cd16454	RING-H2_PA-TM-RING	coord: 95..137 e-value: 1.86269E-20 score: 79.2681
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 95..142

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10022070.1	HG10022070.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0061630	ubiquitin protein ligase activity
molecular_function	GO:0008270	zinc ion binding