HG10022046 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10022046
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description50S ribosomal protein L9, chloroplastic
LocationChr05: 20205438 .. 20212395 (-)
RNA-Seq ExpressionHG10022046
SyntenyHG10022046
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCTATAACAACCGCTCTGTCATGGAGTTCTTCCGTTGTAGATGTGGGTCTACCAAATGTAGGTGGAAGCTTCGAAGAAACTGCCAAGTTCTCTTATGGAAGGACCGGTATGGTGGTTGTGGCCCAAAAGAAGGCTACGAAGTCACGAAAGGTAATGGTCAAAAATGGGTTTTTCAAATTCCTCCCTAATGGCTTTTCTCTGTGGCTGTTTTTCTTTTTCTTTCTTTCTCTCTGTTGGGTGTTAGTGATTGCAATTGTAATTTGGTTTTGTGGTCTGTGGAATTGGGGCAGATTATTCTGAAGGAGGATGTTCCGGACCTGGGAAAGAAAGGGCAACTTATTGATGTGAAGGCTGGGTATTATAGAAACTATCTTTTCCCCTTGGGCAAGGCCCAGATTGTCACTCCAGTTTTGCTCAAGTAATGACTTACATAACCCATTTAGTTTGTTTTATCTATAATATTTATGTTCTCAAAGTTGTGTTGAGGATTTCACATCAAAAAGAATTTAGGGACCTCACACTTTTTATATGATAGATGGACTACTCCTCTCATTGCCAATTGGTTTTGAGATGAAACTTGTGTTATCTAATGTGGTATTATCAGAGTCTATAAAGCTTAAACGAGTATTCGGTCTAATGAAAAAGCAATTGTGATCCGATCAAGAAATGGTGAACCCAAAAGAGGCACCATCTAGAGGGACATGTTGAGGATCCCACATTGGAAAAATCAAGAGTCCTCACATTTTTTATAAGACAAATCGGCTACTCCTCTTACTGCTAATTAGTTTTGAGATGGAACTCCATGTTATCTAATAAGTTGTACTAGTGCAAATGATCTTACTGAATCCCAACAAGGGATTTTAGAAATGTTGGTAATCAGGAGGGAATTGGAAGTGTGACCAAATAGTTGTTAGTTAGTTGCTGAGTCAGAGTGGTTATTGATTGGTTGTTTTTAACTAAATTTGTATAGCTGGTTAATGGAGAGTGTAATGAACAAATATTCTGGTGTATACAGTCAATGAATGAGAATGACAAGGATACTTTGATTTAAGAGTGGAAGTTTCGTGGTATCAGGCTCTGAGTGATAAGCTTCCTTTCACTCTCCCTTCCTTTGCCACCCCTTTGATTTCAATCTCAAACAATGCATGCCATGTCTAATATCTGCAATATGATCCCTATTTAAATGGATTTTTGGGCAATTTCATCCTGTGGAAATATCTGATTACTTTCATTCTGGTAGTTCACAAGTTCATTTTTGTAGTGGGAAGCCTACTGAAATCCAATCCCTTTTTTCCAGCATTGGCAGCTAGTTGAATCTCCCAAATTAACCACATGTCTAAGAAATTGGTTTCTTAAGATTAGAAATATAGTAGAATCAAGTAGTTTTCCTATGAGAATAGTTGAGGTGTGTGCAAGTTGACATGGATTGTTTCGGACATCCAAAAAAAGGAAGAAAAAAGAGAGGCTGCTTTAAGTTTAAGCTCCCATGACACTGACAAAGCTTGTCTCTTCCTTCTCAAACAACATTATCCTACGTTGTCTTGTTGGAAACACAACCTCAAAAAACTTTGGGAAAAACTTGAGATGCTCCATTCCTCTGTGATGAAGAAATCTACAGAATTGGTTGATATATGTAGCCAGTCACAGAGCTTTGAAGCAAATTGTGGCTGCAGGATCCATGCATATAGAAGAAGAGGATCTGCACATCCATATGGAAAATAGACATCCAGCTGAGTATAATACTTTTCCACGTCATTTAGAACCAAATCTAATTCAGTTACTTTTTAAGAGCTCCACGTAATATTGAAAGCTGAAGCAGATATAACTGAAAAGAACCCAAATTCGAAGATATCTTTTAGCAGACAATGACAATGTTTGTCTACGTTTGAATTTAATCAAACAAGACCTAATTTTTGTAGAGGAGGAATGGAGGTGATAGATACCAAAATGGAGGATGAGGTAGAAACAGTTCCAACAGTGGGCAATACCAAAATTTTAAGAATCATGTTTCACTAGAATTGGCAATTAAAACACTTTTTTTTCTCTTTCTCTATTTAATGTGTTGCTTCCAGTCTTTTGCCTATCCGTCAATGTTGCATTGGTAGTAATTGTTATCTTAATTCTTACTTTAGTTACTTTTGTATACAACACAAGCTTTTGCAAAAGATCATATTTCAAGGACAAAGTTTTAATGGCCCTTATTTTATTCACCTCACCAAATAGCTTCATTATGGTCAGCTGAAGAATAGCATAAATCTTTAGTTTCTCAACTTGGACAACTTGGAGCCAAAGTATCTTGTATTCTGTGGCATGGTAGGTTGCTGTTTCCTGGTGGTCATATACTTCACAATCTTATTTGAACTTTGATTGGAATGGTGATGTTTATTGGTCTACAAGTTGTTTTTATGGTTCCAGCTCCATTTCCTTGTATGGAAGAAAGCAGCAGACAATGGAGTCCATGAGCTTTACAGAAGCTGAGTACAATGTTTTAGCTTTGATGAGGGCTGAGATGTCTTGGATTTGGCAACTTCTCAACAACTTGTTGGCAAATCTCAGATCCTATCTACTTATTTGGAATGATAATATTTCATCTTTTCATCTTGCTCAATAACAGAACGTGTGAAAGTTAACTTTCGTGGTATTCATGTTTTCAAATAAGAAATTGAGATATAGTAACAAAAAGAAAGTGTCTCCTGTGGGCTGGAGGTAGTGGGAACGGCCATCCAAAGAAGCAACAAAAGAATGGTCTTCCAATATTAAGTAATTATAGATATAATTTCAAAAGAATTTTCTATGTTGAGCACCACCATGAAGCTATATGCTGCACACTATTATGAAAAGAATCAAAGGAAGAATACGTTTCTTCAAGATCCTTTGGTTTCATTCTTTTCAAAGAAGCCAAAAAAGGGCTCTAGTTGTCAACTCTACAAAAACCTTGCCTTACCCTTAAAGCCTCAACCCGATAGGGCTTCAACGAGGTCATCCAATTTTCTGGGAAATCACATTGACAAACCAAATTCTTTCAAAATAAAAATCCAACCACCCTGCACAAAAGGACAATGAAGGAAAATATGATCCAGAGTATCATTCACCCTATAACAAAAGCAGTTGGTCGAATGGGGCGAAGCCCATTTGGGGATTTTCTTTGGGGCTTCTCTTGAGTATCCATGAATTAGGAGAGTAAATCCCCAAATCCATCCATCTCTCGTTCTCATTTTTAGAATATTTGAACTTCCAAATGAGATCTACCAAGGCAGCCTTTAAGAGGGTAGACTACTTCTAAGATTTGTAAAGACGGATTTAGTGGTCAAATTGCCCAATGGCTCTGGGGAGGGACCATACAACCTTGTCTTTCCCGAAGTTCAACTTTACTGCATTTAACTTTTCAAATTATTGGATGAAAAGAACATTCTTATGAAGTTCATTTCAACCGTCTTATTTGAGGTCCATTAACTCATGTCTTTTTAGGCTAATCATTTGATAGAGGATGTTAGTAAAATAAGTATTAGTTAGTTGCTCAGTGGTATCCATTATTTGGTTAACTAACTTTGTTGAACTGGTTATTGGAATTTGACGTGCATTGGCACTCTGCTTTCACTATGTATTTAATGAGAATGACAATGGCACTTGACCAAACTATGACAATTTCAAACGTAACAGCATGATGATATCTATCAAAAAGTATAAATATGTTAAACAGTAAACTGTAGGCTGAAATTAATTATGAATCAGAACTGTTGTTTAATGCACATTCATTGAATTTCTTGAGATTGATCTTTATTTTTCTCAGGGAAATGCGGATTGAAGAGGAAAGAATCGAGGCTGAGAAAAAACGGGTAACAAATCCTTTTCACTTGTTTCTTGATCGTCCATTCATATTCTATCCTTTCCATTTATTTCTTGATCTTCATATTCTATTAGCAAAATGATTTTAGGGTATCTGGGTAGCTAATTACTCAATGTAATTTTTCTTATGAGCATCAACAACAAGTATTAGCTTTTACTCTTTCAAATGATTTGGGGGTCTAATAGTTTGAGATGCCATTAGATGAACTTTTTCTTTTTTAGAAGCGAGACACCTCTTCTATAGCAATTTTTGGAAGAACTAAGAAGCACCAATTAAGTGCTTTCTCTGAAAATATTTTTACACGTCATGTTGTACTACTATCCATACTTGCCAAATGATTGGATGCTCATTTATTGAAACTTTGCCAGTCCGTTGGATAATTCTGTTCCCTATGCTACAAGGGACATTTTTGAGATGCATTCTTTCATCTTTTCCTGAATACCAGCAAATATTAGGCTGCATACTTTCTTTCTGTAGATAAGATAACATTTTATTGTCGCTGAATTTCTAAACTGGCCTGTGGCCATATGCAGAGCAGTTAAATAAAATATGACAGATATTTCGTTTTCTTGACTATCACTACCTTTTCTATGGGGATTTATTCAAATGATAATAAACTTGTCAGGTGATAGAGGAGGCACAGCAACTTGCTCTGATTTTTGAAACTGTTGGAGCTTTCAAAGTGAAGCGGAAAGGTGGAAAAGGAAAACAGATATTTGGAACGTGAGTTAGATTTTATTTTTAGCTGTATTATGAAGCAGTTTTCTATTTCTTTTCTTTTCATTATGCCTACTCAATTACACTTATTTTTGCAGTGTCACAGCACAGGATCTTGTTGATATTATCAAGGCACAACTACAGAGGTACTTTATCTATTTTTCTATGTGATTAGAAACTTCATTTACTTGGTGATAGTTCAGAACTTGGGGAAGGGGGTTTGTGGTCCCATCAGACGTCAACTGCAAGGGATGGTTGGCCTTTCAAGGTATGTTGCTAGACTTTATGAATGAGGAAACGACATTGTCGAGTATATCAAAAACCCACAAGGATGGAAAGTTCCTTCCTTTGCTTACACTGAAAGCAGTTGGTTCCCCTGCTGGTGTTGTGTAAGCTGCTGGGTGCCCTGTAAATCCTTTGACTCCTTTGGGAGGGGCTTAGAACAAGGAAGTCAGAGGGCTGAACTGGAACAAAGTTATTGTAGTGACCAAGAGGACTTCCATGATGACAATGGAAAATCCTCGAGACGCTCCAGGGCTGGACCCGAGACTCCTACACTATCAACCCTTTTCATCCAAATAAATCACTCCTATAATACTCTTCCATGGACACAGTAAGGTTTCTTGCAAGTTGCAATAAATAAGGGAGGTATTACTTTTGGATCCTTCACTTTGAAGTCGGAACACCTGAACCCTCATAAACTTGGGAGAATTAACTCGGTCCCTACCTACAGAGGATGGGTCAGATTCAGAAATATCCCCTAAACTAATGGATCTTGGCTATTTTTTAAGGTGATTAGTAACGGCTTCTAGGGCCTTTTAGACTATGGAGTTAACTCCTTGCCTCATTGAATGCTTGGAAGTTGCCATCAAAGTTATGAGAAAGTATTTTGGCTTCATTTCCTCATAGGTTAAGTTGATAGATAAGGTCCAGGTCTTTATGGCTCAAGTGAAGCTTCTTCTGGGACCGCAATTTATGATTAAAAAAGAAGTGGTACACATTGTTAGAAAGAAACGTATCGCGCCTTATGCAGTTTTTGGAAGAAAAAAAAAATCTGAAAAGTTGAGTTCCATTGAAATAATTTAGTAAAATAGGGGGTAGTTTTTTGTCTCTTTGCAAATGCATATTTCAAAGTGATGCATTTGAGTAGGAATACGTGTTGGATAAGTGTTCAAAATCATGTGTGAATGTCCAAAATCTTGGATGAGTGTTCAAGAGATGCATTTGATTAGGAATGTGTGTGTTTGGCTATAAATATGTTAAATCTCTCAAAAAGAAGAGAAGGGGGAGGTGGGGGCTCATGGCTGAGGGGGATGGAAAAAGAAGAGAGAAAGGTGGGAGATGGGGGCTGGAGGGTAAAGAGGGAAAAGTGCACAAAACCCTAAAAAAGTTCAAAATATATACGGTTGGTTCGGTTCGGAGCAGGTTCCAAAAATTGGCTAGTTATTAAAATCTCTAAAACTGAACCAAATCGAAAATTTATCTTACCCAACCCTGAGTTACTTGAGTTTTTTGGGTTGCCAATATTTTCTTAACCCTCTCTAATTTCAAGCTGGCCAAAGAGCTTTGTCATGACAATGACCTAACAAGTCCAACTTGTAAAACTAAATCATATGAGTGAACTAGTAGCTCCAAAGGATATGATCTCAATTCTTAGATGCACCCCTACTCACGATACACCACTACAACCTCAAGAACAAGGAATGCCTCACAATGTGGTCCTAGGTCTTAACTTTCCCATGCAAGACTAGCTCAACAAAGAGTGAGTTTGACCATGGACACCCCAACCATCCAAAGAGAGAAGCTGAAGTGTTTGTCGTCTCCCTATGTGACAAAGGGTTATGGACTGATTTGAGGATTAACTTGAGTATTTCAAGTAGTTTGAAATTAGAACAGGGAAGGGCACTCAACTTTCTTCCTCCCCAACTCTTGTAATCCTCATTTTCATACAGATAACTATTATGTGGTTCTTCTCAGAAACAGACACCAAACCTTGAGTTCTCTGCTGGAAATGTGACAAACAGGCAACCTTTTGTTTTCATTGGAGGGGGGTCGCCATGTTGCTATAAAAAATACTTCAATGTAATTACAGGGGTGGATCAAAGTGATTACATCGAAGAATTGATATGAAACGAAGCACTTCGTGTTAAAGATTATAAATTGGCTTATTATACTGTTGGATATGAAACCAAAGATACTGATATCTTGGTAGCATTCAAAGTAACTCCTCAATTGGGAGTTCCACCTGAGGAAGCAGAGGCTGATGTAGCTGTTGGATCTTCTACCGGTACATGGACAACCGTGTGGACCGATGGACATACCAATCTTGATCGTTACAAAGGACGATGCTATGGAATCGAGCCTGTTCCTGGAGAAGTAAATCAATAG

mRNA sequence

ATGGCTTCTATAACAACCGCTCTGTCATGGAGTTCTTCCGTTGTAGATGTGGGTCTACCAAATGTAGGTGGAAGCTTCGAAGAAACTGCCAAGTTCTCTTATGGAAGGACCGGTATGGTGGTTGTGGCCCAAAAGAAGGCTACGAAGTCACGAAAGATTATTCTGAAGGAGGATGTTCCGGACCTGGGAAAGAAAGGGCAACTTATTGATGTGAAGGCTGGGTATTATAGAAACTATCTTTTCCCCTTGGGCAAGGCCCAGATTGTCACTCCAGTTTTGCTCAAGGAAATGCGGATTGAAGAGGAAAGAATCGAGGCTGAGAAAAAACGGGTGATAGAGGAGGCACAGCAACTTGCTCTGATTTTTGAAACTGTTGGAGCTTTCAAAGTGAAGCGGAAAGGTGGAAAAGGAAAACAGATATTTGGAACTGTCACAGCACAGGATCTTGTTGATATTATCAAGGCACAACTACAGAGAACTTGGGGAAGGGGGTTTGTGGTCCCATCAGACGTCAACTGCAAGGGATGGTTGGCCTTTCAAGATTATAAATTGGCTTATTATACTGTTGGATATGAAACCAAAGATACTGATATCTTGGTAGCATTCAAAGTAACTCCTCAATTGGGAGTTCCACCTGAGGAAGCAGAGGCTGATGTAGCTGTTGGATCTTCTACCGGTACATGGACAACCGTGTGGACCGATGGACATACCAATCTTGATCGTTACAAAGGACGATGCTATGGAATCGAGCCTGTTCCTGGAGAAGTAAATCAATAG

Coding sequence (CDS)

ATGGCTTCTATAACAACCGCTCTGTCATGGAGTTCTTCCGTTGTAGATGTGGGTCTACCAAATGTAGGTGGAAGCTTCGAAGAAACTGCCAAGTTCTCTTATGGAAGGACCGGTATGGTGGTTGTGGCCCAAAAGAAGGCTACGAAGTCACGAAAGATTATTCTGAAGGAGGATGTTCCGGACCTGGGAAAGAAAGGGCAACTTATTGATGTGAAGGCTGGGTATTATAGAAACTATCTTTTCCCCTTGGGCAAGGCCCAGATTGTCACTCCAGTTTTGCTCAAGGAAATGCGGATTGAAGAGGAAAGAATCGAGGCTGAGAAAAAACGGGTGATAGAGGAGGCACAGCAACTTGCTCTGATTTTTGAAACTGTTGGAGCTTTCAAAGTGAAGCGGAAAGGTGGAAAAGGAAAACAGATATTTGGAACTGTCACAGCACAGGATCTTGTTGATATTATCAAGGCACAACTACAGAGAACTTGGGGAAGGGGGTTTGTGGTCCCATCAGACGTCAACTGCAAGGGATGGTTGGCCTTTCAAGATTATAAATTGGCTTATTATACTGTTGGATATGAAACCAAAGATACTGATATCTTGGTAGCATTCAAAGTAACTCCTCAATTGGGAGTTCCACCTGAGGAAGCAGAGGCTGATGTAGCTGTTGGATCTTCTACCGGTACATGGACAACCGTGTGGACCGATGGACATACCAATCTTGATCGTTACAAAGGACGATGCTATGGAATCGAGCCTGTTCCTGGAGAAGTAAATCAATAG

Protein sequence

MASITTALSWSSSVVDVGLPNVGGSFEETAKFSYGRTGMVVVAQKKATKSRKIILKEDVPDLGKKGQLIDVKAGYYRNYLFPLGKAQIVTPVLLKEMRIEEERIEAEKKRVIEEAQQLALIFETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQRTWGRGFVVPSDVNCKGWLAFQDYKLAYYTVGYETKDTDILVAFKVTPQLGVPPEEAEADVAVGSSTGTWTTVWTDGHTNLDRYKGRCYGIEPVPGEVNQ
Homology
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BLAST of HG10022046 vs. NCBI nr
Match: XP_038895317.1 (50S ribosomal protein L9, chloroplastic [Benincasa hispida])

HSP 1 Score: 292.7 bits (748), Expect = 3.0e-75
Identity = 153/159 (96.23%), Postives = 156/159 (98.11%), Query Frame = 0 

Query: 1   MASITTALSWSSSVVDVGLPNVGGSFEETAKFSYGRTGMVVVAQKKATKSRKIILKEDVP 60
           MASITTALSWSSSVVD+GLPNVGGS EETAKFSYGRT MVVVAQKKA KSRKIILKEDVP
Sbjct: 1   MASITTALSWSSSVVDMGLPNVGGSLEETAKFSYGRTAMVVVAQKKALKSRKIILKEDVP 60

Query: 61  DLGKKGQLIDVKAGYYRNYLFPLGKAQIVTPVLLKEMRIEEERIEAEKKRVIEEAQQLAL 120
           DLGKKGQLIDVKAGY+RNYLFP+GKAQIVTPVLLKEMRIEEERIEAEKKRVIEEAQQLAL
Sbjct: 61  DLGKKGQLIDVKAGYFRNYLFPMGKAQIVTPVLLKEMRIEEERIEAEKKRVIEEAQQLAL 120

Query: 121 IFETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQR 160
           IFETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQR
Sbjct: 121 IFETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQR 159

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BLAST of HG10022046 vs. NCBI nr
Match: XP_008463369.1 (PREDICTED: 50S ribosomal protein L9, chloroplastic [Cucumis melo] >KAA0051904.1 50S ribosomal protein L9 [Cucumis melo var. makuwa] >TYJ99884.1 50S ribosomal protein L9 [Cucumis melo var. makuwa])

HSP 1 Score: 292.0 bits (746), Expect = 5.2e-75
Identity = 153/175 (87.43%), Postives = 161/175 (92.00%), Query Frame = 0 

Query: 1   MASITTALSWSSSVVDVGLPNVGGSFEETAKFSYGRTGMVVVAQKKATKSRKIILKEDVP 60
           MASITTALSWSSS+VD+GLPNV G+ EETAKFSYGRT M VVAQKKA+KSRKIILKEDVP
Sbjct: 1   MASITTALSWSSSLVDMGLPNVAGNIEETAKFSYGRTAMAVVAQKKASKSRKIILKEDVP 60

Query: 61  DLGKKGQLIDVKAGYYRNYLFPLGKAQIVTPVLLKEMRIEEERIEAEKKRVIEEAQQLAL 120
           DLGKKGQLIDVKAGYYRNYLFP+GKAQIVTPVLLKEMRIEEERIEAEKKRVIEEAQQLAL
Sbjct: 61  DLGKKGQLIDVKAGYYRNYLFPMGKAQIVTPVLLKEMRIEEERIEAEKKRVIEEAQQLAL 120

Query: 121 IFETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQRTWGRGFVVPSDVNCKG 176
           IFETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQR   +  VV  ++   G
Sbjct: 121 IFETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQRDIDKRIVVLPEIRETG 175

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BLAST of HG10022046 vs. NCBI nr
Match: XP_022152873.1 (50S ribosomal protein L9, chloroplastic [Momordica charantia])

HSP 1 Score: 288.1 bits (736), Expect = 7.4e-74
Identity = 149/159 (93.71%), Postives = 156/159 (98.11%), Query Frame = 0 

Query: 1   MASITTALSWSSSVVDVGLPNVGGSFEETAKFSYGRTGMVVVAQKKATKSRKIILKEDVP 60
           MAS+TTALSWSSSVVD+GLPN+GG+FEETAKFSYGR+ MVVVAQKKATKSRKIILKEDV 
Sbjct: 1   MASLTTALSWSSSVVDMGLPNIGGNFEETAKFSYGRSAMVVVAQKKATKSRKIILKEDVA 60

Query: 61  DLGKKGQLIDVKAGYYRNYLFPLGKAQIVTPVLLKEMRIEEERIEAEKKRVIEEAQQLAL 120
           DLGKKGQLIDVKAGYYRNYLFPLGKAQIVTPVLLKEMR+EEERIEAEKKRV EEAQQLA+
Sbjct: 61  DLGKKGQLIDVKAGYYRNYLFPLGKAQIVTPVLLKEMRMEEERIEAEKKRVKEEAQQLAM 120

Query: 121 IFETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQR 160
           IFETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQR
Sbjct: 121 IFETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQR 159

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BLAST of HG10022046 vs. NCBI nr
Match: XP_004147275.1 (50S ribosomal protein L9, chloroplastic [Cucumis sativus] >KGN64766.1 hypothetical protein Csa_013040 [Cucumis sativus])

HSP 1 Score: 285.0 bits (728), Expect = 6.3e-73
Identity = 148/159 (93.08%), Postives = 155/159 (97.48%), Query Frame = 0 

Query: 1   MASITTALSWSSSVVDVGLPNVGGSFEETAKFSYGRTGMVVVAQKKATKSRKIILKEDVP 60
           MASITTALSWSSS++D+GLPNV G+ EETAKFSYGRT MVVVAQKKA+KSRKIILKEDV 
Sbjct: 1   MASITTALSWSSSLLDMGLPNVAGNIEETAKFSYGRTAMVVVAQKKASKSRKIILKEDVA 60

Query: 61  DLGKKGQLIDVKAGYYRNYLFPLGKAQIVTPVLLKEMRIEEERIEAEKKRVIEEAQQLAL 120
           DLGKKGQLIDVKAGYYRNYLFP+GKAQIVTPVLLKEMRIEEERIEAEKKRVIEEAQQLAL
Sbjct: 61  DLGKKGQLIDVKAGYYRNYLFPMGKAQIVTPVLLKEMRIEEERIEAEKKRVIEEAQQLAL 120

Query: 121 IFETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQR 160
           IF+TVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQR
Sbjct: 121 IFQTVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQR 159

[Close]
BLAST of HG10022046 vs. NCBI nr
Match: XP_022964816.1 (50S ribosomal protein L9, chloroplastic [Cucurbita moschata] >KAG6583512.1 50S ribosomal protein L9, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019261.1 50S ribosomal protein L9, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 277.3 bits (708), Expect = 1.3e-70
Identity = 147/175 (84.00%), Postives = 158/175 (90.29%), Query Frame = 0 

Query: 1   MASITTALSWSSSVVDVGLPNVGGSFEETAKFSYGRTGMVVVAQKKATKSRKIILKEDVP 60
           MAS+TTALSW SS   VGLPN G +F+ETAKFS+GRT +VVVAQKKATKSRKIILKEDVP
Sbjct: 1   MASLTTALSWRSS---VGLPNFGANFDETAKFSHGRTALVVVAQKKATKSRKIILKEDVP 60

Query: 61  DLGKKGQLIDVKAGYYRNYLFPLGKAQIVTPVLLKEMRIEEERIEAEKKRVIEEAQQLAL 120
           +LGKKGQLIDVKAGYYRNYLFP+GKAQIVTPVLLKEMRIEEERIEAEKKRV+EEAQQLAL
Sbjct: 61  ELGKKGQLIDVKAGYYRNYLFPMGKAQIVTPVLLKEMRIEEERIEAEKKRVMEEAQQLAL 120

Query: 121 IFETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQRTWGRGFVVPSDVNCKG 176
           IFETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQR   +  VV  ++   G
Sbjct: 121 IFETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQRDIDKRIVVLPEIRETG 172

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BLAST of HG10022046 vs. ExPASy Swiss-Prot
Match: P82180 (50S ribosomal protein L9, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL9 PE=1 SV=2)

HSP 1 Score: 203.4 bits (516), Expect = 3.2e-51
Identity = 114/178 (64.04%), Postives = 136/178 (76.40%), Query Frame = 0 

Query: 1   MASITT--ALSWSSSVVDVGLPNVGGSFEETAKFSYG-RTGMVVVAQKKATKSRKIILKE 60
           MAS T+  +LSWS+S       +  G+  E  K     R  + +VAQKK  K RKIILKE
Sbjct: 1   MASTTSTLSLSWSNS-----FHSFAGAISEPQKSPENCRVMLPIVAQKKVKKIRKIILKE 60

Query: 61  DVPDLGKKGQLIDVKAGYYRNYLFPLGKAQIVTPVLLKEMRIEEERIEAEKKRVIEEAQQ 120
           D+PDLGKKGQL+DV+AG+ RN+L PLGKA++VTP+LLKEM++E+ERIEAEKKRV EEAQQ
Sbjct: 61  DIPDLGKKGQLLDVRAGFLRNFLLPLGKAEVVTPLLLKEMKMEDERIEAEKKRVKEEAQQ 120

Query: 121 LALIFETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQRTWGRGFVVPSDVNCKG 176
           LA +FETVGAFKVKRKGGKGKQIFG+VTAQDLVDIIKAQLQR   +  V   D+   G
Sbjct: 121 LARMFETVGAFKVKRKGGKGKQIFGSVTAQDLVDIIKAQLQRDVDKKVVFLPDIRETG 173

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BLAST of HG10022046 vs. ExPASy Swiss-Prot
Match: Q6JJ61 (50S ribosomal protein L9, chloroplastic OS=Ipomoea trifida OX=35884 GN=RPL9 PE=3 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 1.2e-50
Identity = 111/153 (72.55%), Postives = 122/153 (79.74%), Query Frame = 0 

Query: 7   ALSWSSSVVDVGLPNVGGSFEETAKFSYGRTGMVVVAQKKATKSRKIILKEDVPDLGKKG 66
           ALSWSSS +         +   TAK     +   +V QKK  K RKIILKEDV +LGKKG
Sbjct: 8   ALSWSSSSLLGNYKLSKNAPLGTAKLVERTSNFTIVCQKKTKKIRKIILKEDVQELGKKG 67

Query: 67  QLIDVKAGYYRNYLFPLGKAQIVTPVLLKEMRIEEERIEAEKKRVIEEAQQLALIFETVG 126
           QL++V+AGYYRNYL P+G AQIVTP LLKEM+IEEERIEAEKKRV EEAQQLALIFETVG
Sbjct: 68  QLMNVRAGYYRNYLLPMGMAQIVTPQLLKEMKIEEERIEAEKKRVKEEAQQLALIFETVG 127

Query: 127 AFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQR 160
            FKVKRKGGKGKQIFG+VTAQDLVDIIKAQLQR
Sbjct: 128 GFKVKRKGGKGKQIFGSVTAQDLVDIIKAQLQR 160

[Close]
BLAST of HG10022046 vs. ExPASy Swiss-Prot
Match: P25864 (50S ribosomal protein L9, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL9 PE=2 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 2.3e-49
Identity = 107/160 (66.88%), Postives = 130/160 (81.25%), Query Frame = 0 

Query: 1   MASITT-ALSWSSSVVDVGLPNVGGSFEETAKFSYGRTGMVVVAQKKATKSRKIILKEDV 60
           MAS T  +LSWSSS       +  G   ET K S  R    VV+QKKA K RK+ILKEDV
Sbjct: 1   MASSTALSLSWSSS--PCWSHSFNGGANETLKVSERRFNFEVVSQKKAKKLRKVILKEDV 60

Query: 61  PDLGKKGQLIDVKAGYYRNYLFPLGKAQIVTPVLLKEMRIEEERIEAEKKRVIEEAQQLA 120
            DLGK+GQL+DVKAG++RN+L P GKAQ++TP+LLKE+++E+ERIEAEK+RV EEAQQLA
Sbjct: 61  TDLGKQGQLLDVKAGFFRNFLLPTGKAQLMTPLLLKELKMEDERIEAEKQRVKEEAQQLA 120

Query: 121 LIFETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQR 160
           ++F+TVGAFKVKRKGGKGK IFG+VTAQDLVDIIK+QLQ+
Sbjct: 121 MVFQTVGAFKVKRKGGKGKLIFGSVTAQDLVDIIKSQLQK 158

[Close]
BLAST of HG10022046 vs. ExPASy Swiss-Prot
Match: P11894 (50S ribosomal protein L9, chloroplastic OS=Pisum sativum OX=3888 GN=RPL9 PE=2 SV=2)

HSP 1 Score: 192.6 bits (488), Expect = 5.6e-48
Identity = 96/130 (73.85%), Postives = 116/130 (89.23%), Query Frame = 0 

Query: 30  AKFSYGRTGMVVVAQKKATKSRKIILKEDVPDLGKKGQLIDVKAGYYRNYLFPLGKAQIV 89
           ++F    +G +V AQKK  K+RKIILKED+ ++GKKG+L+DV+ G++RN+LFP GKAQ+V
Sbjct: 26  SQFPNKSSGFMVFAQKKTKKTRKIILKEDIVNVGKKGELLDVRVGFFRNFLFPSGKAQLV 85

Query: 90  TPVLLKEMRIEEERIEAEKKRVIEEAQQLALIFETVGAFKVKRKGGKGKQIFGTVTAQDL 149
           TP +LKEM+IEEERIEAEK+RV+EEAQQLAL FET GAFKVKRKGGKGKQIFG+VTAQDL
Sbjct: 86  TPGVLKEMKIEEERIEAEKRRVLEEAQQLALFFETFGAFKVKRKGGKGKQIFGSVTAQDL 145

Query: 150 VDIIKAQLQR 160
           VDIIKAQLQR
Sbjct: 146 VDIIKAQLQR 155

[Close]
BLAST of HG10022046 vs. ExPASy Swiss-Prot
Match: Q8L803 (50S ribosomal protein L9, chloroplastic OS=Triticum aestivum OX=4565 GN=RPL9 PE=2 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 5.6e-40
Identity = 87/138 (63.04%), Postives = 110/138 (79.71%), Query Frame = 0 

Query: 30  AKFSYGR-------TGMVVVAQKKATKSRKIILKEDVPDL-GKKGQLIDVKAGYYRNYLF 89
           A FSY R         +V+VAQ +  K R++ILK+D+ ++ GKKG  + V+AG+YRN+L 
Sbjct: 15  AAFSYPRRLQTRRAPSLVIVAQGRVKKYRQVILKDDIDEISGKKGDTMKVRAGFYRNFLL 74

Query: 90  PLGKAQIVTPVLLKEMRIEEERIEAEKKRVIEEAQQLALIFETVGAFKVKRKGGKGKQIF 149
           P GKA ++TP +LKEM++E+ERIEAEKKRV EEAQQLA +FET+GAFKV RKGGKGKQIF
Sbjct: 75  PKGKATLLTPDVLKEMQLEQERIEAEKKRVKEEAQQLARVFETIGAFKVPRKGGKGKQIF 134

Query: 150 GTVTAQDLVDIIKAQLQR 160
           G+VTAQDLVDIIK+QL R
Sbjct: 135 GSVTAQDLVDIIKSQLNR 152

[Close]
BLAST of HG10022046 vs. ExPASy TrEMBL
Match: A0A5A7U986 (50S ribosomal protein L9, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2042G00040 PE=3 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 2.5e-75
Identity = 153/175 (87.43%), Postives = 161/175 (92.00%), Query Frame = 0 

Query: 1   MASITTALSWSSSVVDVGLPNVGGSFEETAKFSYGRTGMVVVAQKKATKSRKIILKEDVP 60
           MASITTALSWSSS+VD+GLPNV G+ EETAKFSYGRT M VVAQKKA+KSRKIILKEDVP
Sbjct: 1   MASITTALSWSSSLVDMGLPNVAGNIEETAKFSYGRTAMAVVAQKKASKSRKIILKEDVP 60

Query: 61  DLGKKGQLIDVKAGYYRNYLFPLGKAQIVTPVLLKEMRIEEERIEAEKKRVIEEAQQLAL 120
           DLGKKGQLIDVKAGYYRNYLFP+GKAQIVTPVLLKEMRIEEERIEAEKKRVIEEAQQLAL
Sbjct: 61  DLGKKGQLIDVKAGYYRNYLFPMGKAQIVTPVLLKEMRIEEERIEAEKKRVIEEAQQLAL 120

Query: 121 IFETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQRTWGRGFVVPSDVNCKG 176
           IFETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQR   +  VV  ++   G
Sbjct: 121 IFETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQRDIDKRIVVLPEIRETG 175

[Close]
BLAST of HG10022046 vs. ExPASy TrEMBL
Match: A0A1S3CKN3 (50S ribosomal protein L9, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501539 PE=3 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 2.5e-75
Identity = 153/175 (87.43%), Postives = 161/175 (92.00%), Query Frame = 0 

Query: 1   MASITTALSWSSSVVDVGLPNVGGSFEETAKFSYGRTGMVVVAQKKATKSRKIILKEDVP 60
           MASITTALSWSSS+VD+GLPNV G+ EETAKFSYGRT M VVAQKKA+KSRKIILKEDVP
Sbjct: 1   MASITTALSWSSSLVDMGLPNVAGNIEETAKFSYGRTAMAVVAQKKASKSRKIILKEDVP 60

Query: 61  DLGKKGQLIDVKAGYYRNYLFPLGKAQIVTPVLLKEMRIEEERIEAEKKRVIEEAQQLAL 120
           DLGKKGQLIDVKAGYYRNYLFP+GKAQIVTPVLLKEMRIEEERIEAEKKRVIEEAQQLAL
Sbjct: 61  DLGKKGQLIDVKAGYYRNYLFPMGKAQIVTPVLLKEMRIEEERIEAEKKRVIEEAQQLAL 120

Query: 121 IFETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQRTWGRGFVVPSDVNCKG 176
           IFETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQR   +  VV  ++   G
Sbjct: 121 IFETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQRDIDKRIVVLPEIRETG 175

[Close]
BLAST of HG10022046 vs. ExPASy TrEMBL
Match: A0A6J1DG22 (50S ribosomal protein L9, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111020499 PE=3 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 3.6e-74
Identity = 149/159 (93.71%), Postives = 156/159 (98.11%), Query Frame = 0 

Query: 1   MASITTALSWSSSVVDVGLPNVGGSFEETAKFSYGRTGMVVVAQKKATKSRKIILKEDVP 60
           MAS+TTALSWSSSVVD+GLPN+GG+FEETAKFSYGR+ MVVVAQKKATKSRKIILKEDV 
Sbjct: 1   MASLTTALSWSSSVVDMGLPNIGGNFEETAKFSYGRSAMVVVAQKKATKSRKIILKEDVA 60

Query: 61  DLGKKGQLIDVKAGYYRNYLFPLGKAQIVTPVLLKEMRIEEERIEAEKKRVIEEAQQLAL 120
           DLGKKGQLIDVKAGYYRNYLFPLGKAQIVTPVLLKEMR+EEERIEAEKKRV EEAQQLA+
Sbjct: 61  DLGKKGQLIDVKAGYYRNYLFPLGKAQIVTPVLLKEMRMEEERIEAEKKRVKEEAQQLAM 120

Query: 121 IFETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQR 160
           IFETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQR
Sbjct: 121 IFETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQR 159

[Close]
BLAST of HG10022046 vs. ExPASy TrEMBL
Match: A0A0A0LXN8 (50S ribosomal protein L9, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_1G095030 PE=3 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 3.1e-73
Identity = 148/159 (93.08%), Postives = 155/159 (97.48%), Query Frame = 0 

Query: 1   MASITTALSWSSSVVDVGLPNVGGSFEETAKFSYGRTGMVVVAQKKATKSRKIILKEDVP 60
           MASITTALSWSSS++D+GLPNV G+ EETAKFSYGRT MVVVAQKKA+KSRKIILKEDV 
Sbjct: 1   MASITTALSWSSSLLDMGLPNVAGNIEETAKFSYGRTAMVVVAQKKASKSRKIILKEDVA 60

Query: 61  DLGKKGQLIDVKAGYYRNYLFPLGKAQIVTPVLLKEMRIEEERIEAEKKRVIEEAQQLAL 120
           DLGKKGQLIDVKAGYYRNYLFP+GKAQIVTPVLLKEMRIEEERIEAEKKRVIEEAQQLAL
Sbjct: 61  DLGKKGQLIDVKAGYYRNYLFPMGKAQIVTPVLLKEMRIEEERIEAEKKRVIEEAQQLAL 120

Query: 121 IFETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQR 160
           IF+TVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQR
Sbjct: 121 IFQTVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQR 159

[Close]
BLAST of HG10022046 vs. ExPASy TrEMBL
Match: A0A6J1I3V2 (50S ribosomal protein L9, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111469420 PE=3 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 6.4e-71
Identity = 147/175 (84.00%), Postives = 157/175 (89.71%), Query Frame = 0 

Query: 1   MASITTALSWSSSVVDVGLPNVGGSFEETAKFSYGRTGMVVVAQKKATKSRKIILKEDVP 60
           MAS+TT+LSW SS   VGLPN G +FEETA FSYGRT +VVVAQKKATKSRKIILKEDVP
Sbjct: 1   MASLTTSLSWRSS---VGLPNFGANFEETANFSYGRTALVVVAQKKATKSRKIILKEDVP 60

Query: 61  DLGKKGQLIDVKAGYYRNYLFPLGKAQIVTPVLLKEMRIEEERIEAEKKRVIEEAQQLAL 120
           +LGKKGQLIDVKAGYYRNYLFP+GKAQIVTPVLLKEMRIEEERIEAEKKRV+EEAQQLAL
Sbjct: 61  ELGKKGQLIDVKAGYYRNYLFPMGKAQIVTPVLLKEMRIEEERIEAEKKRVMEEAQQLAL 120

Query: 121 IFETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQRTWGRGFVVPSDVNCKG 176
           IFETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQR   +  VV  ++   G
Sbjct: 121 IFETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQRDIDKRIVVLPEIRETG 172

[Close]
BLAST of HG10022046 vs. TAIR 10
Match: AT3G44890.1 (ribosomal protein L9 )

HSP 1 Score: 197.2 bits (500), Expect = 1.6e-50
Identity = 107/160 (66.88%), Postives = 130/160 (81.25%), Query Frame = 0 

Query: 1   MASITT-ALSWSSSVVDVGLPNVGGSFEETAKFSYGRTGMVVVAQKKATKSRKIILKEDV 60
           MAS T  +LSWSSS       +  G   ET K S  R    VV+QKKA K RK+ILKEDV
Sbjct: 1   MASSTALSLSWSSS--PCWSHSFNGGANETLKVSERRFNFEVVSQKKAKKLRKVILKEDV 60

Query: 61  PDLGKKGQLIDVKAGYYRNYLFPLGKAQIVTPVLLKEMRIEEERIEAEKKRVIEEAQQLA 120
            DLGK+GQL+DVKAG++RN+L P GKAQ++TP+LLKE+++E+ERIEAEK+RV EEAQQLA
Sbjct: 61  TDLGKQGQLLDVKAGFFRNFLLPTGKAQLMTPLLLKELKMEDERIEAEKQRVKEEAQQLA 120

Query: 121 LIFETVGAFKVKRKGGKGKQIFGTVTAQDLVDIIKAQLQR 160
           ++F+TVGAFKVKRKGGKGK IFG+VTAQDLVDIIK+QLQ+
Sbjct: 121 MVFQTVGAFKVKRKGGKGKLIFGSVTAQDLVDIIKSQLQK 158

[Close]
BLAST of HG10022046 vs. TAIR 10
Match: ATCG00490.1 (ribulose-bisphosphate carboxylases )

HSP 1 Score: 132.1 bits (331), Expect = 6.4e-31
Identity = 62/79 (78.48%), Postives = 66/79 (83.54%), Query Frame = 0 

Query: 180 QDYKLAYYTVGYETKDTDILVAFKVTPQLGVPPEEAEADVAVGSSTGTWTTVWTDGHTNL 239
           ++YKL YYT  YETKDTDIL AF+VTPQ GVPPEEA A VA  SSTGTWTTVWTDG T+L
Sbjct: 18  KEYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSL 77

Query: 240 DRYKGRCYGIEPVPGEVNQ 259
           DRYKGRCY IEPVPGE  Q
Sbjct: 78  DRYKGRCYHIEPVPGEETQ 96

The following BLAST results are available for this feature:
BLAST of HG10022046 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038895317.13.0e-7596.2350S ribosomal protein L9, chloroplastic [Benincasa hispida][more]
XP_008463369.15.2e-7587.43PREDICTED: 50S ribosomal protein L9, chloroplastic [Cucumis melo] >KAA0051904.1 ... [more]
XP_022152873.17.4e-7493.7150S ribosomal protein L9, chloroplastic [Momordica charantia][more]
XP_004147275.16.3e-7393.0850S ribosomal protein L9, chloroplastic [Cucumis sativus] >KGN64766.1 hypothetic... [more]
XP_022964816.11.3e-7084.0050S ribosomal protein L9, chloroplastic [Cucurbita moschata] >KAG6583512.1 50S r... [more]
BLAST of HG10022046 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P821803.2e-5164.0450S ribosomal protein L9, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL9 PE=... [more]
Q6JJ611.2e-5072.5550S ribosomal protein L9, chloroplastic OS=Ipomoea trifida OX=35884 GN=RPL9 PE=3... [more]
P258642.3e-4966.8850S ribosomal protein L9, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL9 ... [more]
P118945.6e-4873.8550S ribosomal protein L9, chloroplastic OS=Pisum sativum OX=3888 GN=RPL9 PE=2 SV... [more]
Q8L8035.6e-4063.0450S ribosomal protein L9, chloroplastic OS=Triticum aestivum OX=4565 GN=RPL9 PE=... [more]
BLAST of HG10022046 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7U9862.5e-7587.4350S ribosomal protein L9, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A1S3CKN32.5e-7587.4350S ribosomal protein L9, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501539 ... [more]
A0A6J1DG223.6e-7493.7150S ribosomal protein L9, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111... [more]
A0A0A0LXN83.1e-7393.0850S ribosomal protein L9, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_1G0950... [more]
A0A6J1I3V26.4e-7184.0050S ribosomal protein L9, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111469... [more]
BLAST of HG10022046 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G44890.11.6e-5066.88ribosomal protein L9 [more]
ATCG00490.16.4e-3178.48ribulose-bisphosphate carboxylases [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 94..114
NoneNo IPR availablePANTHERPTHR21368:SF2350S RIBOSOMAL PROTEIN L9, CHLOROPLASTICcoord: 1..161
IPR020070Ribosomal protein L9, N-terminalPFAMPF01281Ribosomal_L9_Ncoord: 52..97
e-value: 5.9E-18
score: 64.2
IPR020070Ribosomal protein L9, N-terminalPROSITEPS00651RIBOSOMAL_L9coord: 63..90
IPR020069Ribosomal protein L9, C-terminalPFAMPF03948Ribosomal_L9_Ccoord: 113..158
e-value: 2.2E-5
score: 24.8
IPR036935Ribosomal protein L9, N-terminal domain superfamilyGENE3D3.40.5.10coord: 52..112
e-value: 3.3E-18
score: 66.9
IPR036422RuBisCO large subunit, N-terminal domain superfamilyGENE3D3.30.70.150coord: 177..258
e-value: 5.7E-25
score: 89.7
IPR036422RuBisCO large subunit, N-terminal domain superfamilySUPERFAMILY54966RuBisCO, large subunit, small (N-terminal) domaincoord: 179..258
IPR017443Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminalPFAMPF02788RuBisCO_large_Ncoord: 186..254
e-value: 9.2E-18
score: 64.6
IPR020594Ribosomal protein L9, bacteria/chloroplastTIGRFAMTIGR00158TIGR00158coord: 52..157
e-value: 8.9E-20
score: 69.6
IPR020594Ribosomal protein L9, bacteria/chloroplastHAMAPMF_00503Ribosomal_L9coord: 51..213
score: 16.608406
IPR000244Ribosomal protein L9PANTHERPTHR2136850S RIBOSOMAL PROTEIN L9coord: 1..161
IPR036791Ribosomal protein L9, C-terminal domain superfamilySUPERFAMILY55653Ribosomal protein L9 C-domaincoord: 110..168
IPR009027Ribosomal protein L9/RNase H1, N-terminalSUPERFAMILY55658L9 N-domain-likecoord: 52..107

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10022046.1HG10022046.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015977 carbon fixation
biological_process GO:0006412 translation
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005840 ribosome
molecular_function GO:0016984 ribulose-bisphosphate carboxylase activity
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome