HG10021998 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10021998
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	YrdC-like domain-containing protein
Location	Chr05: 19499101 .. 19504203 (+)
RNA-Seq Expression	HG10021998
Synteny	HG10021998

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGAGACTCTCTCTCTAATCAGAACGTTTGCGACTACTTTTCCCTCTTCTCACCGAGGTTTGCTTTTTATCTTTTAACGGTTTAACTGTTTTGTATGATTATTGGAGGATTGAAACATGAATTAACACAGATTATTACGTTTTAGGATCTACCAATTATGGGCTAGTTTCGTTCTTGCAACAAAATAGAGGATCAAGGGTGAGTTTTCCTAAAACGACATGGAGTTTGGAAAAATGTAGTATGCGGGTTGAGAATTGTTTGCAAGCACTTCGTCCTGCCTCTGAAGCTTTTGCTCAAGAGGCTACAGATGCTCTTAAAGCTGGGAAGGTTATTGCGGTCCCTACTGATACTCTCTATGGACTCGCTTGTGACGCTTGGTATGCCATTCCCGTTATGGTTTTTTTTCTTTTTTTGTGTAATTATCTTATTTTGTGAGTTTTTATTCTTTTTGTTGTGGAAATTGAGGTGACAACACCTTCTGTTTGCTCTTTTATCAATGATGAATGTACTTTATCAATAATAATATAGATCTTTCTTAAGAGGGGAGATTGATATTTGTGATCTTGTTTAGTACAAAGTTCTTGGTGAGAGGTCTTGACCAGGGGTGCGTGTCTCACACTCACTCCCTTGGTTATGTCATGGTTGATCTGGGTGTGCAAAGCAAGGGACTCTTCTTCAGGGAAAGATGTCTTTCAGAGGCTTTGGTATGGCTATAGCTAGTTTCAAATAGTAGAGGAAAATGTTGCATGGTAGCTTAAGAGAATCTTCATGGGAAGATCTTTGCTCTTTATTGCAACAGTCACGAAGGAAAATTGATGTAGGGGTCATTTAGTTATTTTTACTGTGTTGTTACCGTTGTCAGTTTTTGTGTTGTAAGGCTTTAGTGGGCTGGCTGTAGCTTATCTCTAAGTTGTTAGTTTTGAATTTGCCTATAAATAGGCTTGTTCTCCTCCCGGTTATAACACAGTTAGTAATACTCCAAGTTTGAATCTTTTCTCCAAGAAGTTTTCTTACATTAAAAATGAGTGGAGAATCTTCAAGAAGAAACTGGGAGTACCTTTGTTGTAGAGTTTAAACCTTCCACCCTTTCGTTGTCCTTCTCCTTCTCTCATCACATGGACATCTTTTTGTTTGAGAAGATGGCTAAGCAATCTGTTGCTTTGCTAAGGGAAGGGTGGAGGGTGTGGTTGAAAGAGTGAGTGTGGTGCTAAAGGAGTCCTCTTGTAATTCTTGGTCTTTGATTAATAATGGATTTTGAGAAGTTTGTATAATTACTGGTAAAGTTCGTTTTATGATAATGCAACACTCATTTAGGTTGTGCAATTGGTTTAGTCCCGTGGAATGCAAGTTGGATTACAGTTGGTTGATCAACAATGTTCTTGGGTGGATGGGTGAAAGTGAACGATGAGGTGGGCCCTCATTTTCATTTGTTAGAATTGTTTTGTAAAGTTAGATCTTTGTTGCGGGTGTGACGATATAGATGATGTTGTGGTTTAGGGGAGACTTTTTGAGAAGATGTCTCTTTATGAGCTTGTGAAGATGTCTCTTTATGAGCTTGTGGGAGGAGGAGATGGGCTCATTTTGTTTGGGTGTTTCATCAACTGTGAATGAGAGTACTATTCCTTGCATTTCTTTCATGGTGAGGGTCCTGTGGTTAGTGTTTGTGTGGGGGCTACTGGAAGAGATCCTTGGTTTGTTTCCTTGTTTTACAACTTTGTGGCGTATCTTCCCTGAAAGAAATAAAAGAGTTTTTAGAGAGCTTGAGAGCCATCAAGAGGTATGGTCCAAAAGAGCCTTGGGAGAGATGTGGCCTGGGTTACTCATTTGGGCCTTAGTTTCTAAGGATTTTGTTAGGAATCAAGGTAGTATGGGCTATCTTTGTCTTACACTGGTTAGAATAGGATGACCAATGTGGTACTTAAGTGCCTTGGCCTCCCACGTCATAGCTAGCTTTTGGGGTGTGGTTCTCCAAGGTGTTTAAGTACCTAACAACAATATCAGAGTCGGTTGTTGACGGTCTGAAGTGGAACCGGCAGAGGGTTCTGACTGGGTGTGGCCGAGTGAAGTACCATCGGAGTAGCCGCCGGGATGTCGACTTGCCAAGGATGGGGTATTGTTAAGAACCAAGGTAGTATGGGTTACCTTTGTCTTACATCGGTTAGAATGGGATGACCAATGTGGTACTTAAGTGCCTTGACTCTCCCACCTCAATAGCTAGCTTTTGAGGTGTGGTTCTCCAAGGTGCTTAAGGTACCTAATAGATTTCTGTACTTATCTTTCTGTTATGCACGACAACTAGAGCCCTTTTTGTTTTTGTTTGTCTTATAATTTATATATATATTTTTTATTTCTTATAATTTTCTACTTTTTTGTTAGGCTAGTTTTGTGGTAGGCTTTTTTTCCTATTTATTTATTTATTTTTTTTTTTTGTATTGAGTTTGTATTTTTTCACTTGTCTTAATGATAGCTTATGTTTAATTTTCATCGAGAGCAATTATAGAAAGTAGATTTTATGTAAAATTTTATCCTTAAACTACAATGTCAATATTTATTGCCCTGATTTGTGCATAAGACAGTTGACTCTTTAAAAGAAGATAAAATTATCTTTTGTTATCTCGAATGCGATACTGAACAGTCATCTAAAAAACATACTTTTAATTGGTTGCCTATTTCTCTCTTAGTAGGCCCTTTCCTGTTCTCAAATCCACCATTTTTCCTATTTGATAGAATAATTGTATTACTGCATGAATTCTGAGGAAAATACTGCACGGTAATACAATGTTATAAAATTGAGAGATAATTATGAAATACATCATTGTGTTGGAACATAATGGTTACCACTTCAGAATCTAAAAATGGTTATCAAGTATGCATAATTTTGGATAAAATTTTCAAGTTTCTATAAACACCGTTCTTTCATGTAGTTATAGAAGTATACTCAATAATTTTGTTAAATCATGAGATGTGTCTTTCAGAAAGGAGGGTAACAGAATATTCATTTTCGAAGCGCATAAGCAAAAAGTTGATGAACAAAATCGAAGAGAGGTGTTTTCGTGTTTGTGAAACTATATGCACAAAGTAACCATTCCTAAACTTAATTGCGTTGCAGTTTGCATTTATTTAACTGTGGTTTCTGTGGGGATTAATTTTGCAGTTCTTCTGAAGCAATCCATAGGATTTATGAAATTAAAGGACGTAAACTTACAAGCCCTCTCGCCATTTGTGTTGGTGATGTCTCTGACATAACTCGTTTTGCTGTCACAGACCATTTGCCTTCTGGTTTGCTTGATTCTCTCCTTCCTGGGCCTGTAACTGTTGTACTGAAAAGAGGTTTGTATTTGAAATCTGCTTATTTATGCTAAGATAGTAAATAATGCATTAAAAGGTTGAAAGTATTTTTGGACAATTAACCTTGAGGAGCATTATTTGATTGAAATAAAGTAAAAAGGTTAAGAAAAGACTTCTGATCCTTGAATTAAAGTAGCAATTTAATTGATAAATTTTAGATTGAAACAATTTAGTCTCTAAACTTTAGCATATCGCAATTTAGTTCATGTACTTTAAAATTCATAACAATATAATCTCTACTTTGAAAAATTGTCAAAATCAAGTTTCAATTTTTATAATGCAATGACTTAAAGTCTTTGTTCTTTATAGACACATTCGGTATATAATTTGTTTATCAATTAACATTTGGAAGAAATCTCATTAAATCTAACAATATTTTTCACATTGGGACTAAATTTTATTACAAATTTTAAATAGATAAGCTAAATTGTTACAAAATAAAAAGTACATGGACTAAATTGTTACTTCCATAAAAGTTAAGGGACTTCAAATGTTTTTTCACAAGGAAAAGAAGTTGTTGAGTAACTATTTCTATGTACGTCCTTGAGAACAGTTGGGCAGGTTATGATAATCTTTCTTATATTTTGTTCTTTTCACCTGTTCCCATATCATTTCTTAGTGACTTGTGGCCTATACTTATTAGTGAGAAGCAGCTAGGGCTATTAGAGAGCTGCAGCTGCAGCTGCGGGCTCTTGCCTCTTGCTTATTAACTTTTTTCTCTTCCGAAATTTTAGCAGAAAAATATTTTCTTCAAAAGGCAATTTCAAATGCCCTTTTTGGAATTTAGTATTTGTGACACGGACTATATAAATAAGATATTAATTTTTTACATCCCTTGTTAATGGATTGTAATGTAAATATTAAAATAGTTGCCCCCATGTCACACCTGCATATCTGAGATTATGTTCATTTACATTTTAGTCTCCAACCTTCCCGTAGTCTGAGTTTTTTACATTTAGGTATTTTGCAGGTGAGGCGAGTATTCTTGAGAAGTCTTTGAACCCTGGATTGGACAGTATCGGAGTCCGTGTACCTGATGCTGACTTTATTCGGCTTATTTCTCGTAGATCAGAGACAGCATTGGCCCTTACAAGTGCTAATTTAAGTGGACAACCAAGCAGTGTTTGTGTTAATGACTTTGAAAACCTATGGCAACACTGTGCTTATGTATACGATGGTGGTGTTCTTCCTGCTGGACGAGCGGGCTCGACGATCATTGACCTCACCGAGCGTGGCACATATAAGATTCTCAGAGCTGGAAGGTACATTTCTTGCTTTGTCAAACTCCAGGAGTTGACAGTACTATTACAAGTCTTTTAACTCCCTTAGGGCGATGCCATTACATAAATGTTGGTTGATTTGACATGACGTGATAAATAAATGGTAGAAGAAAAAAAGTAGATAGTTCGATAAATTTAAATAACCTGCAACATACTCTCTTTCAAATTTAAATGTCAAATCTATTTTATTATTGCTTAGATATATATATGAAACATTGTGTCAAATCTATCAAAGTTCGTTAATAAGCATACCGCATCATCATTGTTTTGACAATATTAATGATAAAGATTACATAAAATCAAAAGCTCAAACTTCAATAGTTGAAACCGTAGGGACTATTTATGAGAGTTTGATTAGGTTTGTTTGTGATAGTTCTCTCATGATGTTGATTATACATTTGCAGTGCAAAGGAGCAAACTGTTGCAACACTTGAAAGGTATTCACTATTAGAAGAACCAGCTAGCATTTGA

mRNA sequence

ATGGTTGAGACTCTCTCTCTAATCAGAACGTTTGCGACTACTTTTCCCTCTTCTCACCGAGGATCTACCAATTATGGGCTAGTTTCGTTCTTGCAACAAAATAGAGGATCAAGGGTGAGTTTTCCTAAAACGACATGGAGTTTGGAAAAATGTAGTATGCGGGTTGAGAATTGTTTGCAAGCACTTCGTCCTGCCTCTGAAGCTTTTGCTCAAGAGGCTACAGATGCTCTTAAAGCTGGGAAGGTTATTGCGGTCCCTACTGATACTCTCTATGGACTCGCTTGTGACGCTTGTTCTTCTGAAGCAATCCATAGGATTTATGAAATTAAAGGACGTAAACTTACAAGCCCTCTCGCCATTTGTGTTGGTGATGTCTCTGACATAACTCGTTTTGCTGTCACAGACCATTTGCCTTCTGGTTTGCTTGATTCTCTCCTTCCTGGGCCTGTAACTGTTGTACTGAAAAGAGGTGAGGCGAGTATTCTTGAGAAGTCTTTGAACCCTGGATTGGACAGTATCGGAGTCCGTGTACCTGATGCTGACTTTATTCGGCTTATTTCTCGTAGATCAGAGACAGCATTGGCCCTTACAAGTGCTAATTTAAGTGGACAACCAAGCAGTGTTTGTGTTAATGACTTTGAAAACCTATGGCAACACTGTGCTTATGTATACGATGGTGGTGTTCTTCCTGCTGGACGAGCGGGCTCGACGATCATTGACCTCACCGAGCGTGGCACATATAAGATTCTCAGAGCTGGAAGTGCAAAGGAGCAAACTGTTGCAACACTTGAAAGGTATTCACTATTAGAAGAACCAGCTAGCATTTGA

Coding sequence (CDS)

ATGGTTGAGACTCTCTCTCTAATCAGAACGTTTGCGACTACTTTTCCCTCTTCTCACCGAGGATCTACCAATTATGGGCTAGTTTCGTTCTTGCAACAAAATAGAGGATCAAGGGTGAGTTTTCCTAAAACGACATGGAGTTTGGAAAAATGTAGTATGCGGGTTGAGAATTGTTTGCAAGCACTTCGTCCTGCCTCTGAAGCTTTTGCTCAAGAGGCTACAGATGCTCTTAAAGCTGGGAAGGTTATTGCGGTCCCTACTGATACTCTCTATGGACTCGCTTGTGACGCTTGTTCTTCTGAAGCAATCCATAGGATTTATGAAATTAAAGGACGTAAACTTACAAGCCCTCTCGCCATTTGTGTTGGTGATGTCTCTGACATAACTCGTTTTGCTGTCACAGACCATTTGCCTTCTGGTTTGCTTGATTCTCTCCTTCCTGGGCCTGTAACTGTTGTACTGAAAAGAGGTGAGGCGAGTATTCTTGAGAAGTCTTTGAACCCTGGATTGGACAGTATCGGAGTCCGTGTACCTGATGCTGACTTTATTCGGCTTATTTCTCGTAGATCAGAGACAGCATTGGCCCTTACAAGTGCTAATTTAAGTGGACAACCAAGCAGTGTTTGTGTTAATGACTTTGAAAACCTATGGCAACACTGTGCTTATGTATACGATGGTGGTGTTCTTCCTGCTGGACGAGCGGGCTCGACGATCATTGACCTCACCGAGCGTGGCACATATAAGATTCTCAGAGCTGGAAGTGCAAAGGAGCAAACTGTTGCAACACTTGAAAGGTATTCACTATTAGAAGAACCAGCTAGCATTTGA

Protein sequence

MVETLSLIRTFATTFPSSHRGSTNYGLVSFLQQNRGSRVSFPKTTWSLEKCSMRVENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSSEAIHRIYEIKGRKLTSPLAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGEASILEKSLNPGLDSIGVRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIIDLTERGTYKILRAGSAKEQTVATLERYSLLEEPASI

Homology

[Close]

BLAST of HG10021998 vs. NCBI nr
Match: XP_038893581.1 (yrdC domain-containing protein, mitochondrial isoform X1 [Benincasa hispida])

HSP 1 Score: 521.2 bits (1341), Expect = 5.6e-144
Identity = 266/275 (96.73%), Postives = 268/275 (97.45%), Query Frame = 0


Query: 1   MVETLSLIRTFATTFPSSHRGSTNYGLVSFLQQNRGSRVSFPKTTWSLEKCSMRVENCLQ 60
           MVE+LSLIRTF  TFPSSH GS NYGLVSFLQQNRGSRVSFPKTTWSLEKC MRVENCLQ
Sbjct: 8   MVESLSLIRTF-VTFPSSHLGSPNYGLVSFLQQNRGSRVSFPKTTWSLEKCCMRVENCLQ 67

Query: 61  ALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSSEAIHRIYEIKGRKLTSPLAI 120
           ALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSSEA+HRIYEIKGRKLTSPLAI
Sbjct: 68  ALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSSEAVHRIYEIKGRKLTSPLAI 127

Query: 121 CVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGEASILEKSLNPGLDSIGVRVPDA 180
           CVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGEASILEKSLNPGLDSIGVRVPDA
Sbjct: 128 CVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGEASILEKSLNPGLDSIGVRVPDA 187

Query: 181 DFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIID 240
           DFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIID
Sbjct: 188 DFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIID 247

Query: 241 LTERGTYKILRAGSAKEQTVATLERYSLLEEPASI 276
           LTERGTYKILRAGSAKEQTVA LERYSLLEE ASI
Sbjct: 248 LTERGTYKILRAGSAKEQTVAILERYSLLEEAASI 281

[Close]

BLAST of HG10021998 vs. NCBI nr
Match: XP_004148791.1 (yrdC domain-containing protein, mitochondrial isoform X1 [Cucumis sativus])

HSP 1 Score: 499.2 bits (1284), Expect = 2.3e-137
Identity = 250/275 (90.91%), Postives = 266/275 (96.73%), Query Frame = 0


Query: 1   MVETLSLIRTFATTFPSSHRGSTNYGLVSFLQQNRGSRVSFPKTTWSLEKCSMRVENCLQ 60
           M ++LSLIRTF TTFPSS  GS+NYG+VSFLQ+NRGSRVSF KT WSLEKC MRVENCLQ
Sbjct: 8   MADSLSLIRTF-TTFPSSQLGSSNYGIVSFLQRNRGSRVSFLKTNWSLEKCCMRVENCLQ 67

Query: 61  ALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSSEAIHRIYEIKGRKLTSPLAI 120
           ALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACS+EA+HRIYEIKGRKLTSPLAI
Sbjct: 68  ALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSAEAVHRIYEIKGRKLTSPLAI 127

Query: 121 CVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGEASILEKSLNPGLDSIGVRVPDA 180
           CVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGE+S+L+KSLNPGLDSIGVRVPDA
Sbjct: 128 CVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDSIGVRVPDA 187

Query: 181 DFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIID 240
           DFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIID
Sbjct: 188 DFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIID 247

Query: 241 LTERGTYKILRAGSAKEQTVATLERYSLLEEPASI 276
           LTE+GT+KI+RAGSA+EQT+ATLERYSLLE  A+I
Sbjct: 248 LTEQGTFKIIRAGSAEEQTIATLERYSLLEAAATI 281

[Close]

BLAST of HG10021998 vs. NCBI nr
Match: KGN64727.2 (hypothetical protein Csa_013125 [Cucumis sativus])

HSP 1 Score: 499.2 bits (1284), Expect = 2.3e-137
Identity = 250/275 (90.91%), Postives = 266/275 (96.73%), Query Frame = 0


Query: 1   MVETLSLIRTFATTFPSSHRGSTNYGLVSFLQQNRGSRVSFPKTTWSLEKCSMRVENCLQ 60
           M ++LSLIRTF TTFPSS  GS+NYG+VSFLQ+NRGSRVSF KT WSLEKC MRVENCLQ
Sbjct: 1   MADSLSLIRTF-TTFPSSQLGSSNYGIVSFLQRNRGSRVSFLKTNWSLEKCCMRVENCLQ 60

Query: 61  ALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSSEAIHRIYEIKGRKLTSPLAI 120
           ALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACS+EA+HRIYEIKGRKLTSPLAI
Sbjct: 61  ALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSAEAVHRIYEIKGRKLTSPLAI 120

Query: 121 CVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGEASILEKSLNPGLDSIGVRVPDA 180
           CVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGE+S+L+KSLNPGLDSIGVRVPDA
Sbjct: 121 CVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDSIGVRVPDA 180

Query: 181 DFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIID 240
           DFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIID
Sbjct: 181 DFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIID 240

Query: 241 LTERGTYKILRAGSAKEQTVATLERYSLLEEPASI 276
           LTE+GT+KI+RAGSA+EQT+ATLERYSLLE  A+I
Sbjct: 241 LTEQGTFKIIRAGSAEEQTIATLERYSLLEAAATI 274

[Close]

BLAST of HG10021998 vs. NCBI nr
Match: XP_008465284.1 (PREDICTED: yrdC domain-containing protein, mitochondrial [Cucumis melo] >KAA0036981.1 yrdC domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 493.4 bits (1269), Expect = 1.2e-135
Identity = 245/275 (89.09%), Postives = 265/275 (96.36%), Query Frame = 0


Query: 1   MVETLSLIRTFATTFPSSHRGSTNYGLVSFLQQNRGSRVSFPKTTWSLEKCSMRVENCLQ 60
           M ++LSLIRTFA TFPSSH GS+NYG+VSFLQ+NRGSRVSF KT WSLEKC M VENCLQ
Sbjct: 8   MADSLSLIRTFA-TFPSSHLGSSNYGIVSFLQRNRGSRVSFLKTDWSLEKCCMPVENCLQ 67

Query: 61  ALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSSEAIHRIYEIKGRKLTSPLAI 120
           ALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACS+EA+HRIYEIKGRKLTSPLAI
Sbjct: 68  ALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSAEAVHRIYEIKGRKLTSPLAI 127

Query: 121 CVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGEASILEKSLNPGLDSIGVRVPDA 180
           CVG VSDITR+A+TDHLPSGLLDSLLPGPVTVVLKRGE+S+L+KSLNPGLDSIGVRVPDA
Sbjct: 128 CVGGVSDITRYAITDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDSIGVRVPDA 187

Query: 181 DFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIID 240
           DFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTI+D
Sbjct: 188 DFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIVD 247

Query: 241 LTERGTYKILRAGSAKEQTVATLERYSLLEEPASI 276
           LTERGT+KI+RAGSA++QT+ATL+RYSLLE  A+I
Sbjct: 248 LTERGTFKIIRAGSAEKQTIATLQRYSLLEAAATI 281

[Close]

BLAST of HG10021998 vs. NCBI nr
Match: XP_023521571.1 (yrdC domain-containing protein, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023523156.1 yrdC domain-containing protein, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 484.2 bits (1245), Expect = 7.5e-133
Identity = 246/274 (89.78%), Postives = 259/274 (94.53%), Query Frame = 0


Query: 1   MVETLSLIRTFATTFPSSHRGSTNYGLVSFLQQNRGSRVSFPKTTWSLEKCSMRVENCLQ 60
           MVE LSLIRTFA TFPSS  G+ NYG VSFL  NRGSR++FPKT WSLEKCSMRVEN LQ
Sbjct: 13  MVEGLSLIRTFA-TFPSSQLGAPNYGFVSFLHHNRGSRLNFPKTVWSLEKCSMRVENSLQ 72

Query: 61  ALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSSEAIHRIYEIKGRKLTSPLAI 120
           ALRPASEAFAQEAT+ALKAGKVIAVPTDTLYGLACDACSSEA++RIYEIKGRKLTSPLAI
Sbjct: 73  ALRPASEAFAQEATEALKAGKVIAVPTDTLYGLACDACSSEAVNRIYEIKGRKLTSPLAI 132

Query: 121 CVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGEASILEKSLNPGLDSIGVRVPDA 180
           CVGDVSDITRFAV DHLP GLLDSLLPGPVTVVLKRGE+SILEKSLNPGL+SIGVRVPDA
Sbjct: 133 CVGDVSDITRFAVADHLPHGLLDSLLPGPVTVVLKRGESSILEKSLNPGLESIGVRVPDA 192

Query: 181 DFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIID 240
           DFIRLISRRS TALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIID
Sbjct: 193 DFIRLISRRSGTALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIID 252

Query: 241 LTERGTYKILRAGSAKEQTVATLERYSLLEEPAS 275
           LT+RGT+KI+RAGSAKEQTVATL+RYSLLE+  S
Sbjct: 253 LTKRGTFKIIRAGSAKEQTVATLKRYSLLEDADS 285

[Close]

BLAST of HG10021998 vs. ExPASy Swiss-Prot
Match: Q0VC80 (YrdC domain-containing protein, mitochondrial OS=Bos taurus OX=9913 GN=YRDC PE=2 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 9.5e-46
Identity = 98/207 (47.34%), Postives = 133/207 (64.25%), Query Frame = 0


Query: 73  ATDALKAGKVIAVPTDTLYGLACDACSSEAIHRIYEIKGRKLTSPLAICVGDVSDITRFA 132
           A   L+AG V+AVPTDTLYGLAC A  SEA+  +Y +KGR  T PLA+C+G V+D+ R+ 
Sbjct: 71  AVAELRAGAVVAVPTDTLYGLACSASCSEALGAVYRVKGRSETKPLAVCLGRVADVYRYC 130

Query: 133 VTDHLPSGLLDSLLPGPVTVVLKRGEASILEKSLNPGLDSIGVRVPDADFIRLISRRSET 192
               +P GLL  LLPGPVT+V++R E   L K LNP    +G+R+PD  F++ +++    
Sbjct: 131 HV-RVPEGLLKDLLPGPVTLVMERSEE--LNKDLNPFTPLVGIRIPDHAFMQDLAQMFGG 190

Query: 193 ALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVL-----PAGRAGSTIIDLTERGTY 252
            LALTSANLS Q SS+ V +F++LW H + + DGG +     P  R GST++DL+  G +
Sbjct: 191 PLALTSANLSSQSSSLNVEEFQDLWPHLSLIIDGGPIGDGQSPECRLGSTVVDLSVPGKF 250

Query: 253 KILRAGSAKEQTVATLERYSLLEEPAS 275
            I+R G A E T A L+ Y LL    S
Sbjct: 251 GIIRPGCALESTSAILQEYGLLPSHGS 274

[Close]

BLAST of HG10021998 vs. ExPASy Swiss-Prot
Match: Q86U90 (YrdC domain-containing protein, mitochondrial OS=Homo sapiens OX=9606 GN=YRDC PE=1 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 6.8e-44
Identity = 98/208 (47.12%), Postives = 133/208 (63.94%), Query Frame = 0


Query: 73  ATDALKAGKVIAVPTDTLYGLACDACSSEAIHRIYEIKGRKLTSPLAICVGDVSDITRFA 132
           A   L+AG V+AVPTDTLYGLAC A  S A+  +Y +KGR    PLA+C+G V+D+ R+ 
Sbjct: 73  AVAELRAGAVVAVPTDTLYGLACAASCSAALRAVYRLKGRSEAKPLAVCLGRVADVYRYC 132

Query: 133 VTDHLPSGLLDSLLPGPVTVVLKRGEASILEKSLNPGLDSIGVRVPDADFIRLISRRSET 192
               +P GLL  LLPGPVT+V++R E   L K LNP    +G+R+PD  F++ +++  E 
Sbjct: 133 RV-RVPEGLLKDLLPGPVTLVMERSEE--LNKDLNPFTPLVGIRIPDHAFMQDLAQMFEG 192

Query: 193 ALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVL-----PAGRAGSTIIDLTERGTY 252
            LALTSANLS Q SS+ V +F++LW   + V DGG +     P  R GST++DL+  G +
Sbjct: 193 PLALTSANLSSQASSLNVEEFQDLWPQLSLVIDGGQIGDGQSPECRLGSTVVDLSVPGKF 252

Query: 253 KILRAGSAKEQTVATL-ERYSLLEEPAS 275
            I+R G A E T A L ++Y LL   AS
Sbjct: 253 GIIRPGCALESTTAILQQKYGLLPSHAS 277

[Close]

BLAST of HG10021998 vs. ExPASy Swiss-Prot
Match: Q499R4 (YrdC domain-containing protein, mitochondrial OS=Rattus norvegicus OX=10116 GN=Yrdc PE=2 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 1.3e-42
Identity = 95/208 (45.67%), Postives = 131/208 (62.98%), Query Frame = 0


Query: 73  ATDALKAGKVIAVPTDTLYGLACDACSSEAIHRIYEIKGRKLTSPLAICVGDVSDITRFA 132
           A   L+AG V+AVPTDTLYGLAC A  S A+  +Y +KGR    PLA+C+G V+D+ R+ 
Sbjct: 74  AVAELRAGAVVAVPTDTLYGLACSASCSAALSCVYRLKGRSEAKPLAVCLGRVADVYRYC 133

Query: 133 VTDHLPSGLLDSLLPGPVTVVLKRGEASILEKSLNPGLDSIGVRVPDADFIRLISRRSET 192
               +P  LL+ L PGPVT+V++R E   L K LNP    +G+R+PD  F+  +++    
Sbjct: 134 QV-RVPRELLEDLFPGPVTLVMERSEE--LNKDLNPFTPLVGIRIPDHAFMLDLAQMFGG 193

Query: 193 ALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVL-----PAGRAGSTIIDLTERGTY 252
            LALTSANLS Q SS+ V +F++LW H + V DGG +     P  R GST++DL+  G +
Sbjct: 194 PLALTSANLSSQASSLSVEEFQDLWPHLSLVIDGGPIGDSESPECRLGSTVVDLSVPGKF 253

Query: 253 KILRAGSAKEQTVATLE-RYSLLEEPAS 275
            I+R+G A E T A L+ +Y LL    S
Sbjct: 254 GIIRSGCALENTTAILQGKYGLLPSQGS 278

[Close]

BLAST of HG10021998 vs. ExPASy Swiss-Prot
Match: Q3U5F4 (YrdC domain-containing protein, mitochondrial OS=Mus musculus OX=10090 GN=Yrdc PE=1 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 1.7e-42
Identity = 95/208 (45.67%), Postives = 131/208 (62.98%), Query Frame = 0


Query: 73  ATDALKAGKVIAVPTDTLYGLACDACSSEAIHRIYEIKGRKLTSPLAICVGDVSDITRFA 132
           A   L+AG V+AVPTDTLYGLAC A SS A+  +Y +KGR    PLA+C+G V+D+ R+ 
Sbjct: 74  AVAELRAGAVVAVPTDTLYGLACSASSSAALSCVYRLKGRSEAKPLAVCLGRVADVYRYC 133

Query: 133 VTDHLPSGLLDSLLPGPVTVVLKRGEASILEKSLNPGLDSIGVRVPDADFIRLISRRSET 192
               +P  LL+ L PGPVT+V++R E   L K LNP    +G+R+PD  F+  +++    
Sbjct: 134 QV-RVPRELLEDLFPGPVTLVMERSEE--LNKDLNPFTRLVGIRIPDHAFMLDLAQMFGG 193

Query: 193 ALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVL-----PAGRAGSTIIDLTERGTY 252
            LALTSANLS Q SS+ V +F++LW H + V DGG +     P  R GST++DL+  G +
Sbjct: 194 PLALTSANLSSQASSLSVEEFQDLWPHLSLVIDGGPIGDSQSPECRLGSTVVDLSVPGKF 253

Query: 253 KILRAGSAKEQTVATL-ERYSLLEEPAS 275
            I+R G A E T + L ++Y LL    S
Sbjct: 254 GIIRPGCALENTTSILQQKYGLLPSQGS 278

[Close]

BLAST of HG10021998 vs. ExPASy Swiss-Prot
Match: Q60369 (Putative threonylcarbamoyl-AMP synthase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) OX=243232 GN=MJ0062 PE=3 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 7.3e-22
Identity = 60/167 (35.93%), Postives = 97/167 (58.08%), Query Frame = 0


Query: 80  GKVIAVPTDTLYGLACDACSSEAIHRIYEIKGRKLTSPLAICVGDVSDITRFAVTDHLPS 139
           GK++   TDTLYG++ +A + +A+ ++Y IK R+   PL+ICV D ++I ++A  + L  
Sbjct: 32  GKIVICGTDTLYGISANALNEKAVRKVYNIKRREFNKPLSICVRDKNEIEKYAYVNDLAK 91

Query: 140 GLLDSLLPGPVTVVLKR--GEASILEKSLNPGLDSIGVRVPDADFIRLISRRSETALALT 199
            ++D  LPGP+T++LK+  G   I+ K      D IG+R+PD   IR +   S   L  T
Sbjct: 92  KIIDKFLPGPLTIILKKKPGIPDIVAK------DYIGIRIPDEPIIREL---SIVPLTTT 151

Query: 200 SANLSGQPSSVCVNDFE-NLWQHCAYVYDGGVLPAGRAGSTIIDLTE 244
           SAN+SG+ S   V++ +  + +   YV D G     +  STII + +
Sbjct: 152 SANISGKESPTTVDEIDKEVLKKVDYVIDIGKCKYSKP-STIIKIED 188

[Close]

BLAST of HG10021998 vs. ExPASy TrEMBL
Match: A0A0A0LUP4 (YrdC-like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G077210 PE=3 SV=1)

HSP 1 Score: 499.2 bits (1284), Expect = 1.1e-137
Identity = 250/275 (90.91%), Postives = 266/275 (96.73%), Query Frame = 0


Query: 1   MVETLSLIRTFATTFPSSHRGSTNYGLVSFLQQNRGSRVSFPKTTWSLEKCSMRVENCLQ 60
           M ++LSLIRTF TTFPSS  GS+NYG+VSFLQ+NRGSRVSF KT WSLEKC MRVENCLQ
Sbjct: 8   MADSLSLIRTF-TTFPSSQLGSSNYGIVSFLQRNRGSRVSFLKTNWSLEKCCMRVENCLQ 67

Query: 61  ALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSSEAIHRIYEIKGRKLTSPLAI 120
           ALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACS+EA+HRIYEIKGRKLTSPLAI
Sbjct: 68  ALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSAEAVHRIYEIKGRKLTSPLAI 127

Query: 121 CVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGEASILEKSLNPGLDSIGVRVPDA 180
           CVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGE+S+L+KSLNPGLDSIGVRVPDA
Sbjct: 128 CVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDSIGVRVPDA 187

Query: 181 DFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIID 240
           DFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIID
Sbjct: 188 DFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIID 247

Query: 241 LTERGTYKILRAGSAKEQTVATLERYSLLEEPASI 276
           LTE+GT+KI+RAGSA+EQT+ATLERYSLLE  A+I
Sbjct: 248 LTEQGTFKIIRAGSAEEQTIATLERYSLLEAAATI 281

[Close]

BLAST of HG10021998 vs. ExPASy TrEMBL
Match: A0A5A7T5W1 (YrdC domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00620 PE=3 SV=1)

HSP 1 Score: 493.4 bits (1269), Expect = 6.0e-136
Identity = 245/275 (89.09%), Postives = 265/275 (96.36%), Query Frame = 0


Query: 1   MVETLSLIRTFATTFPSSHRGSTNYGLVSFLQQNRGSRVSFPKTTWSLEKCSMRVENCLQ 60
           M ++LSLIRTFA TFPSSH GS+NYG+VSFLQ+NRGSRVSF KT WSLEKC M VENCLQ
Sbjct: 8   MADSLSLIRTFA-TFPSSHLGSSNYGIVSFLQRNRGSRVSFLKTDWSLEKCCMPVENCLQ 67

Query: 61  ALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSSEAIHRIYEIKGRKLTSPLAI 120
           ALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACS+EA+HRIYEIKGRKLTSPLAI
Sbjct: 68  ALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSAEAVHRIYEIKGRKLTSPLAI 127

Query: 121 CVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGEASILEKSLNPGLDSIGVRVPDA 180
           CVG VSDITR+A+TDHLPSGLLDSLLPGPVTVVLKRGE+S+L+KSLNPGLDSIGVRVPDA
Sbjct: 128 CVGGVSDITRYAITDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDSIGVRVPDA 187

Query: 181 DFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIID 240
           DFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTI+D
Sbjct: 188 DFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIVD 247

Query: 241 LTERGTYKILRAGSAKEQTVATLERYSLLEEPASI 276
           LTERGT+KI+RAGSA++QT+ATL+RYSLLE  A+I
Sbjct: 248 LTERGTFKIIRAGSAEKQTIATLQRYSLLEAAATI 281

[Close]

BLAST of HG10021998 vs. ExPASy TrEMBL
Match: A0A1S3CNI2 (yrdC domain-containing protein, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103502936 PE=3 SV=1)

HSP 1 Score: 493.4 bits (1269), Expect = 6.0e-136
Identity = 245/275 (89.09%), Postives = 265/275 (96.36%), Query Frame = 0


Query: 1   MVETLSLIRTFATTFPSSHRGSTNYGLVSFLQQNRGSRVSFPKTTWSLEKCSMRVENCLQ 60
           M ++LSLIRTFA TFPSSH GS+NYG+VSFLQ+NRGSRVSF KT WSLEKC M VENCLQ
Sbjct: 8   MADSLSLIRTFA-TFPSSHLGSSNYGIVSFLQRNRGSRVSFLKTDWSLEKCCMPVENCLQ 67

Query: 61  ALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSSEAIHRIYEIKGRKLTSPLAI 120
           ALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACS+EA+HRIYEIKGRKLTSPLAI
Sbjct: 68  ALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSAEAVHRIYEIKGRKLTSPLAI 127

Query: 121 CVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGEASILEKSLNPGLDSIGVRVPDA 180
           CVG VSDITR+A+TDHLPSGLLDSLLPGPVTVVLKRGE+S+L+KSLNPGLDSIGVRVPDA
Sbjct: 128 CVGGVSDITRYAITDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDSIGVRVPDA 187

Query: 181 DFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIID 240
           DFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTI+D
Sbjct: 188 DFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIVD 247

Query: 241 LTERGTYKILRAGSAKEQTVATLERYSLLEEPASI 276
           LTERGT+KI+RAGSA++QT+ATL+RYSLLE  A+I
Sbjct: 248 LTERGTFKIIRAGSAEKQTIATLQRYSLLEAAATI 281

[Close]

BLAST of HG10021998 vs. ExPASy TrEMBL
Match: A0A6J1KDV4 (yrdC domain-containing protein, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111492950 PE=3 SV=1)

HSP 1 Score: 483.0 bits (1242), Expect = 8.1e-133
Identity = 246/274 (89.78%), Postives = 258/274 (94.16%), Query Frame = 0


Query: 1   MVETLSLIRTFATTFPSSHRGSTNYGLVSFLQQNRGSRVSFPKTTWSLEKCSMRVENCLQ 60
           MVE LSLIRTFA TFPSS  G+ NYG VSFL  NRGSR++FPKT WSLEKCSMRVEN LQ
Sbjct: 13  MVEGLSLIRTFA-TFPSSQLGAPNYGFVSFLHHNRGSRLNFPKTAWSLEKCSMRVENSLQ 72

Query: 61  ALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSSEAIHRIYEIKGRKLTSPLAI 120
           ALRPASEAFAQEAT+ALKAGKVIAVPTDTLYGLACDACSSEA++RIYEIKGRKLTSPLAI
Sbjct: 73  ALRPASEAFAQEATEALKAGKVIAVPTDTLYGLACDACSSEAVNRIYEIKGRKLTSPLAI 132

Query: 121 CVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGEASILEKSLNPGLDSIGVRVPDA 180
           CVGDVSDITRFAV DHLP GLLDSLLPGPVTVVLKRGE+SILEKSLNPGL+SIGVRVPDA
Sbjct: 133 CVGDVSDITRFAVADHLPHGLLDSLLPGPVTVVLKRGESSILEKSLNPGLESIGVRVPDA 192

Query: 181 DFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIID 240
           DFIRLISRRS TALALTSANLSG+PSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIID
Sbjct: 193 DFIRLISRRSGTALALTSANLSGRPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIID 252

Query: 241 LTERGTYKILRAGSAKEQTVATLERYSLLEEPAS 275
           LT+RG +KI+RAGSAKEQTVATLERYSLLEE  S
Sbjct: 253 LTKRGMFKIIRAGSAKEQTVATLERYSLLEEADS 285

[Close]

BLAST of HG10021998 vs. ExPASy TrEMBL
Match: A0A6J1G9Z7 (yrdC domain-containing protein, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111452294 PE=3 SV=1)

HSP 1 Score: 479.6 bits (1233), Expect = 9.0e-132
Identity = 243/274 (88.69%), Postives = 258/274 (94.16%), Query Frame = 0


Query: 1   MVETLSLIRTFATTFPSSHRGSTNYGLVSFLQQNRGSRVSFPKTTWSLEKCSMRVENCLQ 60
           MVE LS+IRTFA TFPSS  G+ +YG VSFL  NRGSR++FPKT WSLEKCSMRVEN LQ
Sbjct: 13  MVEGLSIIRTFA-TFPSSQLGAPSYGFVSFLHHNRGSRLNFPKTVWSLEKCSMRVENSLQ 72

Query: 61  ALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSSEAIHRIYEIKGRKLTSPLAI 120
           ALRPASEAFAQEA +ALKAGKVIAVPTDTLYGLACDACSSEA++RIYEIKGRKLTSPLAI
Sbjct: 73  ALRPASEAFAQEAIEALKAGKVIAVPTDTLYGLACDACSSEAVNRIYEIKGRKLTSPLAI 132

Query: 121 CVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGEASILEKSLNPGLDSIGVRVPDA 180
           CVGDVSDITRFAV DHLP GLLDSLLPGPVTVVLKRGE+SILEKSLNPGL+SIGVRVPDA
Sbjct: 133 CVGDVSDITRFAVADHLPHGLLDSLLPGPVTVVLKRGESSILEKSLNPGLESIGVRVPDA 192

Query: 181 DFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIID 240
           DFIRLISRRS TALALTSANLSGQPSSVCV+DFENLWQHCAYVYDGG+LPAGRAGSTIID
Sbjct: 193 DFIRLISRRSGTALALTSANLSGQPSSVCVHDFENLWQHCAYVYDGGILPAGRAGSTIID 252

Query: 241 LTERGTYKILRAGSAKEQTVATLERYSLLEEPAS 275
           LT+RGT+KI+RAGSAKEQTVATLERYSLLEE  S
Sbjct: 253 LTKRGTFKIIRAGSAKEQTVATLERYSLLEEADS 285

[Close]

BLAST of HG10021998 vs. TAIR 10
Match: AT5G60590.2 (DHBP synthase RibB-like alpha/beta domain )

HSP 1 Score: 335.1 bits (858), Expect = 5.3e-92
Identity = 173/261 (66.28%), Postives = 201/261 (77.01%), Query Frame = 0


Query: 12  ATTFPSSHRGSTNYGLVSFLQQNRGSRVSF-PKTTWSLEKCSMRVENCLQALRPASEAFA 71
           A + P   +G +     S   Q+R  R     K  WSLE+    V +    + PA+EA+A
Sbjct: 17  APSSPLLRKGVSELRCFSIANQSRRLRWGLQKKMVWSLERAETCVVSKSCLVHPATEAYA 76

Query: 72  QEATDALKAGKVIAVPTDTLYGLACDACSSEAIHRIYEIKGRKLTSPLAICVGDVSDITR 131
           QEA +A+K+ KVIAVPTDTLYG ACDACS EA+ RIYEIKGRKLTSPLAICVGDV DI R
Sbjct: 77  QEAIEAIKSEKVIAVPTDTLYGFACDACSLEAVSRIYEIKGRKLTSPLAICVGDVLDIKR 136

Query: 132 FAVTDHLPSGLLDSLLPGPVTVVLKRGEASILEKSLNPGLDSIGVRVPDADFIRLISRRS 191
            A T HLP GLLDSLLPGPVT+VL+RGE+SILEKSLNPG+ +IGVRVPD +FIR +SR S
Sbjct: 137 VATTSHLPHGLLDSLLPGPVTLVLQRGESSILEKSLNPGIGTIGVRVPDCEFIREVSRGS 196

Query: 192 ETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIIDLTERGTYKIL 251
            + LALTSANLSG  SSVCV DFENLWQHCAYVYDGG+LP+GRAGSTI+DLT+ G YKI+
Sbjct: 197 GSVLALTSANLSGDRSSVCVKDFENLWQHCAYVYDGGLLPSGRAGSTIVDLTKVGKYKII 256

Query: 252 RAGSAKEQTVATLERYSLLEE 272
           R GSAK+ TVA LE+Y L EE
Sbjct: 257 RPGSAKQATVAILEKYLLEEE 277

[Close]

BLAST of HG10021998 vs. TAIR 10
Match: AT5G60590.1 (DHBP synthase RibB-like alpha/beta domain )

HSP 1 Score: 162.2 bits (409), Expect = 6.1e-40
Identity = 87/146 (59.59%), Postives = 102/146 (69.86%), Query Frame = 0


Query: 12  ATTFPSSHRGSTNYGLVSFLQQNRGSRVSF-PKTTWSLEKCSMRVENCLQALRPASEAFA 71
           A + P   +G +     S   Q+R  R     K  WSLE+    V +    + PA+EA+A
Sbjct: 17  APSSPLLRKGVSELRCFSIANQSRRLRWGLQKKMVWSLERAETCVVSKSCLVHPATEAYA 76

Query: 72  QEATDALKAGKVIAVPTDTLYGLACDACSSEAIHRIYEIKGRKLTSPLAICVGDVSDITR 131
           QEA +A+K+ KVIAVPTDTLYG ACDACS EA+ RIYEIKGRKLTSPLAICVGDV DI R
Sbjct: 77  QEAIEAIKSEKVIAVPTDTLYGFACDACSLEAVSRIYEIKGRKLTSPLAICVGDVLDIKR 136

Query: 132 FAVTDHLPSGLLDSLLPGPVTVVLKR 157
            A T HLP GLLDSLLPGPVT+VL+R
Sbjct: 137 VATTSHLPHGLLDSLLPGPVTLVLQR 162

[Close]

BLAST of HG10021998 vs. TAIR 10
Match: AT3G01920.1 (DHBP synthase RibB-like alpha/beta domain )

HSP 1 Score: 66.6 bits (161), Expect = 3.5e-11
Identity = 71/267 (26.59%), Postives = 115/267 (43.07%), Query Frame = 0


Query: 13  TTFPSSHRGSTNYGLVSFLQQNRGSRVSF--PKTTWSLEKCSMRVENCLQALRPASEAFA 72
           +T PS+   S    +V+   +    R+ +  P+ T   E   + V+ C            
Sbjct: 29  STLPSTASLSPRRYIVALAAKRSPKRLKYSTPRFTKEGELVYIEVDPC-----GVDSWKL 88

Query: 73  QEATDALKAGKVIAVPTDTLYGLACDACSSEAIHRIYEIKGRKLTSPLAICVGDVSDITR 132
           Q   D LK G V  +PTDT+Y +ACD  +  A+ R+  IK  + + PL+I    + DI  
Sbjct: 89  QPVIDLLKQGAVGVIPTDTVYAIACDCKNHSAVERLRRIKKIESSKPLSILCRSLRDIDT 148

Query: 133 FAVTDHLPSG----------LLDSLLPGPVTVVLKRGEASILEKSLNPGLDS-------- 192
           F  T   P G           +   LPGP T +L   +  + ++ +  G  S        
Sbjct: 149 F--TMGFPRGDGHGHANVFRAVKQCLPGPYTFILTASK-ELPKQCVGYGTTSVKYASRKN 208

Query: 193 IGVRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLW-----QHCAYVYDGG 252
           +GVR+ D    + I ++ +  L  TS  + G   +  + D   +      +   +V DGG
Sbjct: 209 VGVRISDDALCQAILQQMDAPLICTS--VKGPKENEWMIDPTAIGDIYGPEGLDFVVDGG 268

Query: 253 VLPAGRAGSTIIDLTERGTY-KILRAG 254
           +  A    STI+D+T  G Y K++R G
Sbjct: 269 IRVA--EPSTIVDMT--GPYPKVIREG 281

The following BLAST results are available for this feature:

BLAST of HG10021998 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038893581.1	5.6e-144	96.73	yrdC domain-containing protein, mitochondrial isoform X1 [Benincasa hispida]	[more]
XP_004148791.1	2.3e-137	90.91	yrdC domain-containing protein, mitochondrial isoform X1 [Cucumis sativus]	[more]
KGN64727.2	2.3e-137	90.91	hypothetical protein Csa_013125 [Cucumis sativus]	[more]
XP_008465284.1	1.2e-135	89.09	PREDICTED: yrdC domain-containing protein, mitochondrial [Cucumis melo] >KAA0036...	[more]
XP_023521571.1	7.5e-133	89.78	yrdC domain-containing protein, mitochondrial-like [Cucurbita pepo subsp. pepo] ...	[more]

BLAST of HG10021998 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q0VC80	9.5e-46	47.34	YrdC domain-containing protein, mitochondrial OS=Bos taurus OX=9913 GN=YRDC PE=2...	[more]
Q86U90	6.8e-44	47.12	YrdC domain-containing protein, mitochondrial OS=Homo sapiens OX=9606 GN=YRDC PE...	[more]
Q499R4	1.3e-42	45.67	YrdC domain-containing protein, mitochondrial OS=Rattus norvegicus OX=10116 GN=Y...	[more]
Q3U5F4	1.7e-42	45.67	YrdC domain-containing protein, mitochondrial OS=Mus musculus OX=10090 GN=Yrdc P...	[more]
Q60369	7.3e-22	35.93	Putative threonylcarbamoyl-AMP synthase OS=Methanocaldococcus jannaschii (strain...	[more]

BLAST of HG10021998 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LUP4	1.1e-137	90.91	YrdC-like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G077210 P...	[more]
A0A5A7T5W1	6.0e-136	89.09	YrdC domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A1S3CNI2	6.0e-136	89.09	yrdC domain-containing protein, mitochondrial OS=Cucumis melo OX=3656 GN=LOC1035...	[more]
A0A6J1KDV4	8.1e-133	89.78	yrdC domain-containing protein, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1G9Z7	9.0e-132	88.69	yrdC domain-containing protein, mitochondrial OS=Cucurbita moschata OX=3662 GN=L...	[more]

BLAST of HG10021998 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G60590.2	5.3e-92	66.28	DHBP synthase RibB-like alpha/beta domain	[more]
AT5G60590.1	6.1e-40	59.59	DHBP synthase RibB-like alpha/beta domain	[more]
AT3G01920.1	3.5e-11	26.59	DHBP synthase RibB-like alpha/beta domain	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.90.870.10	DHBP synthase	coord: 60..264 e-value: 7.6E-58 score: 196.8
None	No IPR available	PANTHER	PTHR17490:SF10	YRDC DOMAIN-CONTAINING PROTEIN, MITOCHONDRIAL	coord: 18..272
None	No IPR available	PANTHER	PTHR17490	SUA5	coord: 18..272
IPR006070	YrdC-like domain	PFAM	PF01300	Sua5_yciO_yrdC	coord: 76..253 e-value: 1.9E-46 score: 157.8
IPR006070	YrdC-like domain	TIGRFAM	TIGR00057	TIGR00057	coord: 69..259 e-value: 8.8E-43 score: 143.8
IPR006070	YrdC-like domain	PROSITE	PS51163	YRDC	coord: 67..255 score: 25.954147
IPR017945	DHBP synthase RibB-like alpha/beta domain superfamily	SUPERFAMILY	55821	YrdC/RibB	coord: 68..258

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10021998.1	HG10021998.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006450	regulation of translational fidelity
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005666	RNA polymerase III complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0003725	double-stranded RNA binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0000049	tRNA binding