HG10021981 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10021981
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	THO complex subunit 4A
Location	Chr05: 19319823 .. 19322769 (-)
RNA-Seq Expression	HG10021981
Synteny	HG10021981

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGAGCCTCTCGACATGAGCTTAGATGATATCATCAAGAACAACAAGAAATCGGGATCCTCAAACTTCAGAGGTCGTGGCGGAGCTTCTTCTGGACCAGGTCCTTCTCGCCGCTTTCGCAATCGCGGTCTTAATAGACCAGCGCCTTATTCTACTGCCAAGGTGAAGGATTTGGGTTTTAACATCCCGCTTTCGCTGAATCTTACTACCATCGCCATCCTCTACCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTACTACTACTACTACTACTTCTACTGCCAGTTTCTCATTCTTTTCAAAACGGACTTGGGTGTTTTATTTTTTTTAATGTTTTCAAAAACATGGGGGTTTAGGCGCCCGAGACGGCTTGGTCACACGACATGTTTGTAGATCAGGGTGCGGCATATCCTTCACAGCCTCCACGGGCCTCTGCTATTGAAACTGGCACTAAGCTTTATGTTTCTAATTTGGATTATGGTGTCTCCAACGAGGATATCAAGGTATTTCAGTTTTGGATTTGAGATTTCGAACATGACAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTCTAAGGCTTGATTCTAATTATATATGCAGGAACTGTTTTCTGAAGTTGGTGATCTCAAACGGTATTCAATCAATTATGATAAAAGTGGGAGATCAAAGGTGTGTTTCAAGTGTGGCATACACAAGGACTCTTTTATATCTTTAGCCATATCCTTACATTTGTTTGGATTTTTATTCTTCTTAGGGAACAGCAGAAATTGTTTTTTCACGACAATCAGATGCTCTTGCTGCTATAAAGAGATACAACAATGTTCAGCTAGATGGGAAACCCATGAAGTTGGAGATTGTTGGAACTAACACCGTGACACCTGCTGTGCCTGCTTCTTCAAATGCCAGTTTTGGGAATCCAAATGGATTTCCGAGAGGGTATACATTTCTTTAATTCACTTGTTATTATTTCTAATTTTTTTTTTTTTTTTTTACTTTTACAACTGCAATCATCTATTAACACAGTTAATGGTATGTGTTCAGTTCAGAAGTAGATATAAATTTTATTTTCCTTGCAATAACTTTGTAAGGATATGGTTCAAGAAATTGTTTTCTAGATTGTATTGGGGTTTAACTTGGATTTTTCAACATTTTCTTGTTGTTCTGACTTAGTTCATAGTCAAAACATTTTTCATTACTTTTTGGCATGTCCACTGAAAGTCTTGAAAAGATCAAATCAATCATAAAAACATTCAATTTTGATAGCTCGTCAAGGTACAAGTGTACAGTGTACTTAAAGGAGGTATTTTTCTTGTAACACTGTGGATGTAGTAAATAGTAATCAATATAATGCGTCTTGAAGAAAGAGAGTTCCGCTTGTATGAGGAAAATAGGGAATATAGAGGGAAAAATGTAAGAGAGAGCGCGTGCACACACCCACACCCACACTCACACACAACTATATCTATAGACTATAATGAATAACTTTACTTTCATTGAGAAAAAGTAAAAGAATACAACTGCATGAAAAAAAAAAAAAAGAAGAAAGAGCCCACATAAGGAGGCAAACTAAACATAAGCTGTATCCATGATTTATTGTCAATTTTGTTTGTGATGACAATGTGTTTCTAGGTGGATGTGCATCCAACAGCTTTTACTTCTCAAATTTGCATTTTATGGCATGTAATTAGCTGCTTCCTAATCTTTATTGGTATTCTTTTTAACCATTATGGGTGTCTGACCAACTTATTCACACCTTGGCTAATAATATTAAAAAACCACATGAATCTACCTTTAGTGTTGGAAAATTGGATATTATCTTTAGGGACAGTTGCAAATATAGCAATCATGCCTAAAATATTTGCAGATATAGCACAATGCAAAATAATTTGCAAATATAGAAAAATTTAGATTCAACTCTGAGAGTCTATTAATGATAGACCATATCGTCAATAGGAGTCTATCATGATTGAGTCTATCACTGATAAAGTTTGCTATATTTGCAATTATTTTAAAATGTTGCTATACACTTAGTTATTACCCATTATAATTACCCTTATCTTTAGGTATTTGAGTTTACAACTCGTCTATTTGATCACTACATGAATTTGTTGTGGATTAAAACTTGCAAGATTTCTATTCAAGTTCTCCAATGAACACATCAAGGATTTCTCTTGAAGAGATTTTAATTGTGTGATGTTTCATAGAAGCCCTTTACCGACCAATGACTTTTGCCTTCCTCTTGAAGAGTTATGGTAGTTATGTTGTGTACATGATCATGCATTTGCTATTGTAGATTTTGATAGTAATGCAACTAGGAATAGTATAAGGGTATATTAGTTATTAGATGGGAGAGGTGGTTATGGAATTTAGTTATAAATAGATGGCATTTGGTGAGTGTACTAGGGCTTGAGAGAGATCTCTAGGGGGACGGTGCAAGTATATTGAATTTTGCTTGTATCTATGGTAATTTCTTCTTGATATTGCAATATATTAGTTTCCTATATATAATGTGTTTGGATTTCTAACATATTTCAATTTTATGAATGACCCTGTCCTTTTTATCGTTTATGCTTCAGTTGGCTCTAAAGTATGAAGCTGGTAATTATGTTTGATGTATTTTGAATGAAATTGCTGAATTCTAGGCTTTTCATCCGAGTTTGATTGCTTTTATTGATTCTCTTAATCAGCATACATTTAACAAATTTTCATTTGATTTTAACAGTGGACGTGCCCTGGGTCGAATCCGGGGTGGTGGACGAGGACGTGGACCTGGAAGAGGAGGGCGTGGACGTGGGAGTGGGAGTGGGAGTGGGAGTGGGAGTGGCAGAGGTCGTGGAGAGAAGTTATCGGCCGAAGACCTAGATGCTGATTTGGAGAAGTACCATGAAGAAGCGATGCAGATCAATTAA

mRNA sequence

ATGGCAGAGCCTCTCGACATGAGCTTAGATGATATCATCAAGAACAACAAGAAATCGGGATCCTCAAACTTCAGAGGTCGTGGCGGAGCTTCTTCTGGACCAGGTCCTTCTCGCCGCTTTCGCAATCGCGGTCTTAATAGACCAGCGCCTTATTCTACTGCCAAGGCGCCCGAGACGGCTTGGTCACACGACATGTTTGTAGATCAGGGTGCGGCATATCCTTCACAGCCTCCACGGGCCTCTGCTATTGAAACTGGCACTAAGCTTTATGTTTCTAATTTGGATTATGGTGTCTCCAACGAGGATATCAAGGAACTGTTTTCTGAAGTTGGTGATCTCAAACGGTATTCAATCAATTATGATAAAAGTGGGAGATCAAAGGGAACAGCAGAAATTGTTTTTTCACGACAATCAGATGCTCTTGCTGCTATAAAGAGATACAACAATGTTCAGCTAGATGGGAAACCCATGAAGTTGGAGATTGTTGGAACTAACACCGTGACACCTGCTGTGCCTGCTTCTTCAAATGCCAGTTTTGGGAATCCAAATGGATTTCCGAGAGGTGGACGTGCCCTGGGTCGAATCCGGGGTGGTGGACGAGGACGTGGACCTGGAAGAGGAGGGCGTGGACGTGGGAGTGGGAGTGGGAGTGGGAGTGGGAGTGGCAGAGGTCGTGGAGAGAAGTTATCGGCCGAAGACCTAGATGCTGATTTGGAGAAGTACCATGAAGAAGCGATGCAGATCAATTAA

Coding sequence (CDS)

ATGGCAGAGCCTCTCGACATGAGCTTAGATGATATCATCAAGAACAACAAGAAATCGGGATCCTCAAACTTCAGAGGTCGTGGCGGAGCTTCTTCTGGACCAGGTCCTTCTCGCCGCTTTCGCAATCGCGGTCTTAATAGACCAGCGCCTTATTCTACTGCCAAGGCGCCCGAGACGGCTTGGTCACACGACATGTTTGTAGATCAGGGTGCGGCATATCCTTCACAGCCTCCACGGGCCTCTGCTATTGAAACTGGCACTAAGCTTTATGTTTCTAATTTGGATTATGGTGTCTCCAACGAGGATATCAAGGAACTGTTTTCTGAAGTTGGTGATCTCAAACGGTATTCAATCAATTATGATAAAAGTGGGAGATCAAAGGGAACAGCAGAAATTGTTTTTTCACGACAATCAGATGCTCTTGCTGCTATAAAGAGATACAACAATGTTCAGCTAGATGGGAAACCCATGAAGTTGGAGATTGTTGGAACTAACACCGTGACACCTGCTGTGCCTGCTTCTTCAAATGCCAGTTTTGGGAATCCAAATGGATTTCCGAGAGGTGGACGTGCCCTGGGTCGAATCCGGGGTGGTGGACGAGGACGTGGACCTGGAAGAGGAGGGCGTGGACGTGGGAGTGGGAGTGGGAGTGGGAGTGGGAGTGGCAGAGGTCGTGGAGAGAAGTTATCGGCCGAAGACCTAGATGCTGATTTGGAGAAGTACCATGAAGAAGCGATGCAGATCAATTAA

Protein sequence

MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRPAPYSTAKAPETAWSHDMFVDQGAAYPSQPPRASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINYDKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKLEIVGTNTVTPAVPASSNASFGNPNGFPRGGRALGRIRGGGRGRGPGRGGRGRGSGSGSGSGSGRGRGEKLSAEDLDADLEKYHEEAMQIN

Homology

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BLAST of HG10021981 vs. NCBI nr
Match: XP_038895300.1 (THO complex subunit 4A-like [Benincasa hispida] >XP_038895301.1 THO complex subunit 4A-like [Benincasa hispida])

HSP 1 Score: 444.1 bits (1141), Expect = 7.8e-121
Identity = 237/249 (95.18%), Postives = 237/249 (95.18%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRPAPYSTAKAPETA 60
           MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNR APYS AKAPETA
Sbjct: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSNAKAPETA 60

Query: 61  WSHDMFVDQGAAYPSQPPRASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 120
           WSHDMFVD GAAYPSQPPRASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY
Sbjct: 61  WSHDMFVDHGAAYPSQPPRASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 120

Query: 121 DKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKLEIVGTNTVTPAVPASSNASFG 180
           DKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKLEIVGTN VTPAVPASSNA FG
Sbjct: 121 DKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKLEIVGTNIVTPAVPASSNAGFG 180

Query: 181 NPNGFPRGGRALGRIRGGGRGRGPGRGGRGRGSGSGSGSGSGRGRGEKLSAEDLDADLEK 240
           NPNGFPRGGRALGR RGGGRGRGPGRGGRGR      GSGSGRGRGEKLSAEDLDADLEK
Sbjct: 181 NPNGFPRGGRALGRNRGGGRGRGPGRGGRGR------GSGSGRGRGEKLSAEDLDADLEK 240

Query: 241 YHEEAMQIN 250
           YHEEAMQIN
Sbjct: 241 YHEEAMQIN 243

[Close]

BLAST of HG10021981 vs. NCBI nr
Match: XP_004149042.2 (THO complex subunit 4A isoform X1 [Cucumis sativus] >KGN65665.1 hypothetical protein Csa_019988 [Cucumis sativus])

HSP 1 Score: 441.8 bits (1135), Expect = 3.9e-120
Identity = 235/250 (94.00%), Postives = 240/250 (96.00%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRPAPYSTAKAPETA 60
           MAEPLDMSLDDIIKNNKKSGSSNFR RGGASSGPGPSRRFRNRGLNR  PYST+KAPETA
Sbjct: 1   MAEPLDMSLDDIIKNNKKSGSSNFRARGGASSGPGPSRRFRNRGLNRATPYSTSKAPETA 60

Query: 61  WSHDMFVDQGAAYPSQPPRASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 120
           WSHDMFVD GAAYPS PPRASAIETGTKLYVSNLDYGVSNEDIKELFSEVGD+KRYSINY
Sbjct: 61  WSHDMFVDHGAAYPSHPPRASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDVKRYSINY 120

Query: 121 DKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKLEIVGTNTVTPAVPASSNASFG 180
           DKSGRSKGTAEIVFSRQ+DALAAIKRYNNVQLDGKPMKLEIVGTN VTPAVPA SNASFG
Sbjct: 121 DKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKPMKLEIVGTNIVTPAVPAPSNASFG 180

Query: 181 NPNGFPRGGRALGRIRGGGRGRGPGRG-GRGRGSGSGSGSGSGRGRGEKLSAEDLDADLE 240
           NPNGFPRGGRA+GR RGGGRGRGPGRG GRGRGSGSGSGSGSGRG GEKLSAEDLDADL+
Sbjct: 181 NPNGFPRGGRAMGRNRGGGRGRGPGRGRGRGRGSGSGSGSGSGRGHGEKLSAEDLDADLD 240

Query: 241 KYHEEAMQIN 250
           KYHEEAMQIN
Sbjct: 241 KYHEEAMQIN 250

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BLAST of HG10021981 vs. NCBI nr
Match: XP_008457549.1 (PREDICTED: THO complex subunit 4A [Cucumis melo])

HSP 1 Score: 431.8 bits (1109), Expect = 4.0e-117
Identity = 230/249 (92.37%), Postives = 235/249 (94.38%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRPAPYSTAKAPETA 60
           MAEPLDMSLDDIIKNNKKSGSSNFR RGGASSGPGPSRRFRNRGLNR  PYST+KAPETA
Sbjct: 1   MAEPLDMSLDDIIKNNKKSGSSNFRARGGASSGPGPSRRFRNRGLNRATPYSTSKAPETA 60

Query: 61  WSHDMFVDQGAAYPSQPPRASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 120
           WSHDMFVD GAAYPS PPRASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY
Sbjct: 61  WSHDMFVDHGAAYPSHPPRASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 120

Query: 121 DKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKLEIVGTNTVTPAVPASSNASFG 180
           DKSGRSKGTAEI+FSR +DALAAIKRYNNVQLDGKPMKLEIVGTN VTPAVPA SNASFG
Sbjct: 121 DKSGRSKGTAEILFSRPADALAAIKRYNNVQLDGKPMKLEIVGTNIVTPAVPAPSNASFG 180

Query: 181 NPNGFPRGGRALGRIRGGGRGRGPGRGGRGRGSGSGSGSGSGRGRGEKLSAEDLDADLEK 240
           N NGFPRGGRA+GR RGGGRGRGPGRGGRGR    GSGSGSGRGRGEKLSAEDLDADL+K
Sbjct: 181 NHNGFPRGGRAMGRNRGGGRGRGPGRGGRGR----GSGSGSGRGRGEKLSAEDLDADLDK 240

Query: 241 YHEEAMQIN 250
           YHEEAMQIN
Sbjct: 241 YHEEAMQIN 245

[Close]

BLAST of HG10021981 vs. NCBI nr
Match: KAG6583468.1 (THO complex subunit 4A, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 422.9 bits (1086), Expect = 1.9e-114
Identity = 226/249 (90.76%), Postives = 231/249 (92.77%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRPAPYSTAKAPETA 60
           MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNR APYSTA+APETA
Sbjct: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSTAQAPETA 60

Query: 61  WSHDMFVDQGAAYPSQPPRASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 120
           WSHDMFVD GAAYPSQP RASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY
Sbjct: 61  WSHDMFVDHGAAYPSQPARASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 120

Query: 121 DKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKLEIVGTNTVTPAVPASSNASFG 180
           DKSGRSKGTAEIVFSRQ+DALAAIKRYNNVQLDGK MKLEIVGTN VTPA+PAS+N +FG
Sbjct: 121 DKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLEIVGTNIVTPAIPASANGNFG 180

Query: 181 NPNGFPRGGRALGRIRGGGRGRGPGRGGRGRGSGSGSGSGSGRGRGEKLSAEDLDADLEK 240
           NPNGF RGG  LGR RGGGRGRGPGRGGRGRGS       S RGRGEKLSAEDLDADLEK
Sbjct: 181 NPNGFRRGGHVLGRNRGGGRGRGPGRGGRGRGS-------SSRGRGEKLSAEDLDADLEK 240

Query: 241 YHEEAMQIN 250
           YHEEAMQIN
Sbjct: 241 YHEEAMQIN 242

[Close]

BLAST of HG10021981 vs. NCBI nr
Match: XP_022964653.1 (THO complex subunit 4B-like [Cucurbita moschata])

HSP 1 Score: 422.2 bits (1084), Expect = 3.2e-114
Identity = 226/249 (90.76%), Postives = 231/249 (92.77%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRPAPYSTAKAPETA 60
           MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNR APYSTA+APETA
Sbjct: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSTAQAPETA 60

Query: 61  WSHDMFVDQGAAYPSQPPRASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 120
           WSHDMFVD G+AYPSQP RASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY
Sbjct: 61  WSHDMFVDHGSAYPSQPARASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 120

Query: 121 DKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKLEIVGTNTVTPAVPASSNASFG 180
           DKSGRSKGTAEIVFSRQ+DALAAIKRYNNVQLDGK MKLEIVGTN VTPAVPAS+N +FG
Sbjct: 121 DKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLEIVGTNIVTPAVPASANGNFG 180

Query: 181 NPNGFPRGGRALGRIRGGGRGRGPGRGGRGRGSGSGSGSGSGRGRGEKLSAEDLDADLEK 240
           NPNGF RGG  LGR RGGGRGRGPGRGGRGRGS       S RGRGEKLSAEDLDADLEK
Sbjct: 181 NPNGFRRGGHVLGRNRGGGRGRGPGRGGRGRGS-------SSRGRGEKLSAEDLDADLEK 240

Query: 241 YHEEAMQIN 250
           YHEEAMQIN
Sbjct: 241 YHEEAMQIN 242

[Close]

BLAST of HG10021981 vs. ExPASy Swiss-Prot
Match: Q8L773 (THO complex subunit 4A OS=Arabidopsis thaliana OX=3702 GN=ALY1 PE=1 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 3.1e-64
Identity = 155/253 (61.26%), Postives = 188/253 (74.31%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRG-GASSGPGPSRRFR-NRGLNRPAPYSTAKAPE 60
           M+  LDMSLDD+I  N+KS       RG G+ SGPGP+RR   NR   R APY +AKAPE
Sbjct: 1   MSTGLDMSLDDMIAKNRKSRGGAGPARGTGSGSGPGPTRRNNPNRKSTRSAPYQSAKAPE 60

Query: 61  TAWSHDMFVDQGAAYPSQPPRASA-IETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYS 120
           + W HDMF D+   + S   R+SA IETGTKLY+SNLDYGV NEDIKELF+EVG+LKRY+
Sbjct: 61  STWGHDMFSDRSEDHRS--GRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYT 120

Query: 121 INYDKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKLEIVGTNTVTPAVPASSNA 180
           +++D+SGRSKGTAE+V+SR+ DALAA+K+YN+VQLDGKPMK+EIVGTN  T A P+   A
Sbjct: 121 VHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNLQTAAAPSGRPA 180

Query: 181 SFGNPNGFP-RGGRALGRIRGGGRGRGPGRGGRGRGSGSGSGSGSGRGRGEKLSAEDLDA 240
           + GN NG P RGG+  GR   GG+ RG GRGG GRG G G G   G+G  EK+SAEDLDA
Sbjct: 181 N-GNSNGAPWRGGQ--GR---GGQQRGGGRGGGGRG-GGGRGRRPGKGPAEKISAEDLDA 240

Query: 241 DLEKYHEEAMQIN 250
           DL+KYH   M+ N
Sbjct: 241 DLDKYHSGDMETN 244

[Close]

BLAST of HG10021981 vs. ExPASy Swiss-Prot
Match: Q8L719 (THO complex subunit 4B OS=Arabidopsis thaliana OX=3702 GN=ALY2 PE=1 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 3.3e-61
Identity = 160/291 (54.98%), Postives = 186/291 (63.92%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKNNKK----------SGSSNFRGRGGASSGPGPSRRFRNRGLNRPAP 60
           M+  LDMSLDDIIK+N+K           G +N  GRGG+ S  GPSRRF NR   R AP
Sbjct: 1   MSGGLDMSLDDIIKSNRKPTGSRGRGGIGGGNNTGGRGGSGSNSGPSRRFANRVGARTAP 60

Query: 61  YS----TAKAPETAWSHDMFVDQ---GAAYPSQPPR----ASAIETGTKLYVSNLDYGVS 120
           YS      +A +  W +D+F       AA+           S+IETGTKLY+SNLDYGVS
Sbjct: 61  YSRPIQQQQAHDAMWQNDVFATDASVAAAFGHHQTAVVGGGSSIETGTKLYISNLDYGVS 120

Query: 121 NEDIKELFSEVGDLKRYSINYDKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKL 180
           NEDIKELFSEVGDLKRY I+YD+SGRSKGTAE+VFSR+ DALAA+KRYNNVQLDGK MK+
Sbjct: 121 NEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVKRYNNVQLDGKLMKI 180

Query: 181 EIVGTNTVTPAVPASSNASF--------------------GNPNGFPRG---GRALGRIR 240
           EIVGTN   PA+P  + A                      GN NG  RG   G  +GR R
Sbjct: 181 EIVGTNLSAPALPILATAQIPFPTNGILGNFNENFNGNFNGNFNGNFRGRGRGGFMGRPR 240

Query: 241 GGGRGRGPGRGGRGRGSGSGSGSGSGRGRGEKLSAEDLDADLEKYHEEAMQ 248
           GGG G G  RGGRG     G GSG GRGR E +SAEDLDA+L+KYH+EAM+
Sbjct: 241 GGGFGGGNFRGGRGARGRGGRGSG-GRGRDENVSAEDLDAELDKYHKEAME 290

[Close]

BLAST of HG10021981 vs. ExPASy Swiss-Prot
Match: Q6NQ72 (THO complex subunit 4D OS=Arabidopsis thaliana OX=3702 GN=ALY4 PE=1 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 4.1e-40
Identity = 126/291 (43.30%), Postives = 166/291 (57.04%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKNNK--KSGSSNF-----RGRGGASSGPGPSRRFRNRGLNRPAPYST 60
           M+  L+M+LD+I+K  K  +SG         RGRGG   G GP+RR       RP+ ++ 
Sbjct: 1   MSGALNMTLDEIVKRGKTARSGGRGISRGRGRGRGGGGRGAGPARRGPLAVNARPSSFTI 60

Query: 61  AK----APETAWSHDMFVDQGAAYPSQPPRASAIETGTKLYVSNLDYGVSNEDIKELFSE 120
            K         W   +F D   A       AS +E GT+L+V+NLD GV+NEDI+ELFSE
Sbjct: 61  NKPVRRVRSLPWQSGLFEDGLRA-----AGASGVEVGTRLHVTNLDQGVTNEDIRELFSE 120

Query: 121 VGDLKRYSINYDKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKLEIVGTNTVTP 180
           +G+++RY+I+YDK+GR  GTAE+V+ R+SDA  A+K+YNNV LDG+PM+LEI+G N  + 
Sbjct: 121 IGEVERYAIHYDKNGRPSGTAEVVYPRRSDAFQALKKYNNVLLDGRPMRLEILGGNNSSE 180

Query: 181 A-VPASSNASFGNPNG-------FPRGGRALGRIRGGGRGRGP----------------- 240
           A +    N +    NG         +GG   GR+RGG  GRGP                 
Sbjct: 181 APLSGRVNVNVTGLNGRLKRTVVIQQGGGGRGRVRGGRGGRGPAPTVSRRLPIHNQQGGG 240

Query: 241 ---GRGG---RGRGSGSGSGSGSGRGRGEK---LSAEDLDADLEKYHEEAM 247
              GRGG   RGRG+G G G G GRG G+K    SA DLD DLE YH +AM
Sbjct: 241 MRGGRGGFRARGRGNG-GRGRGGGRGNGKKPVEKSAADLDKDLESYHADAM 285

[Close]

BLAST of HG10021981 vs. ExPASy Swiss-Prot
Match: B5FXN8 (THO complex subunit 4 OS=Taeniopygia guttata OX=59729 GN=ALYREF PE=2 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 2.1e-39
Identity = 118/265 (44.53%), Postives = 151/265 (56.98%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKNNKKS-----GSSNFRGRGGASSGPGPSR-----------RFRNR- 60
           MA+ +DMSLDDIIK N+       G    RGRGG + G GP R             RNR 
Sbjct: 1   MADKMDMSLDDIIKLNRSQRGASRGGRGGRGRGGTARGGGPGRGGVGGGRAGGGPVRNRP 60

Query: 61  ------GLNRPAPYSTAKAPETAWSHDMFVDQGAAYPSQPPRASAIETGTKLYVSNLDYG 120
                 G NRPAPYS  K     W HD+F D G          + +ETG KL VSNLD+G
Sbjct: 61  VMARGGGRNRPAPYSRPKQLPEKWQHDLF-DSGFG------AGAGVETGGKLLVSNLDFG 120

Query: 121 VSNEDIKELFSEVGDLKRYSINYDKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPM 180
           VS+ DI+ELF+E G LK+ +++YD+SGRS GTA++ F R++DAL A+K+YN V LDG+PM
Sbjct: 121 VSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPM 180

Query: 181 KLEIVGTNTVTPAVPASSNASFGNPNGFPRGGRALGRIRGGGRGRGPGRGGRGRGSGSGS 240
            +++V +   T   PA S     N  G  R    LG   GGG  RG   G RGR      
Sbjct: 181 NIQLVTSQIDTQRRPAQS----VNRGGMTRNRGVLGGFGGGGNRRGTRGGNRGR------ 240

Query: 241 GSGSGRGRGEKLSAEDLDADLEKYH 243
           G G+GR   ++LSAE+LDA L+ Y+
Sbjct: 241 GRGAGRTSKQQLSAEELDAQLDAYN 248

[Close]

BLAST of HG10021981 vs. ExPASy Swiss-Prot
Match: O08583 (THO complex subunit 4 OS=Mus musculus OX=10090 GN=Alyref PE=1 SV=3)

HSP 1 Score: 153.7 bits (387), Expect = 2.8e-36
Identity = 114/267 (42.70%), Postives = 149/267 (55.81%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKNNKKS----GSSNFRGRGGASSGPGPSRR-----------FRNR-- 60
           MA+ +DMSLDDIIK N+      G    RGR G+  G G + +            RNR  
Sbjct: 1   MADKMDMSLDDIIKLNRSQRGGRGGGRGRGRAGSQGGRGGAVQAAARVNRGGGPMRNRPA 60

Query: 61  --------GLNRPAPYSTAKAPETAWSHDMFVDQGAAYPSQPPRASAIETGTKLYVSNLD 120
                   G NRPAPYS  K     W HD+F D G          + +ETG KL VSNLD
Sbjct: 61  IARGAAGGGRNRPAPYSRPKQLPDKWQHDLF-DSGFG------GGAGVETGGKLLVSNLD 120

Query: 121 YGVSNEDIKELFSEVGDLKRYSINYDKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGK 180
           +GVS+ DI+ELF+E G LK+ +++YD+SGRS GTA++ F R++DAL A+K+YN V LDG+
Sbjct: 121 FGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGR 180

Query: 181 PMKLEIVGTNTVTPAVPASSNASFGNPNGFPRGGRALGRIRGGGRGRGPGRGGRGRGSGS 240
           PM +++V +   T   PA S           RGG    R  GG  G G  RG   RG   
Sbjct: 181 PMNIQLVTSQIDTQRRPAQS---------INRGGMTRNRGSGGFGGGGTRRG--TRGGSR 240

Query: 241 GSGSGSGRGRGEKLSAEDLDADLEKYH 243
           G G G+GR   ++LSAE+LDA L+ Y+
Sbjct: 241 GRGRGTGRNSKQQLSAEELDAQLDAYN 249

[Close]

BLAST of HG10021981 vs. ExPASy TrEMBL
Match: A0A0A0LUQ3 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G480690 PE=4 SV=1)

HSP 1 Score: 441.8 bits (1135), Expect = 1.9e-120
Identity = 235/250 (94.00%), Postives = 240/250 (96.00%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRPAPYSTAKAPETA 60
           MAEPLDMSLDDIIKNNKKSGSSNFR RGGASSGPGPSRRFRNRGLNR  PYST+KAPETA
Sbjct: 1   MAEPLDMSLDDIIKNNKKSGSSNFRARGGASSGPGPSRRFRNRGLNRATPYSTSKAPETA 60

Query: 61  WSHDMFVDQGAAYPSQPPRASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 120
           WSHDMFVD GAAYPS PPRASAIETGTKLYVSNLDYGVSNEDIKELFSEVGD+KRYSINY
Sbjct: 61  WSHDMFVDHGAAYPSHPPRASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDVKRYSINY 120

Query: 121 DKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKLEIVGTNTVTPAVPASSNASFG 180
           DKSGRSKGTAEIVFSRQ+DALAAIKRYNNVQLDGKPMKLEIVGTN VTPAVPA SNASFG
Sbjct: 121 DKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKPMKLEIVGTNIVTPAVPAPSNASFG 180

Query: 181 NPNGFPRGGRALGRIRGGGRGRGPGRG-GRGRGSGSGSGSGSGRGRGEKLSAEDLDADLE 240
           NPNGFPRGGRA+GR RGGGRGRGPGRG GRGRGSGSGSGSGSGRG GEKLSAEDLDADL+
Sbjct: 181 NPNGFPRGGRAMGRNRGGGRGRGPGRGRGRGRGSGSGSGSGSGRGHGEKLSAEDLDADLD 240

Query: 241 KYHEEAMQIN 250
           KYHEEAMQIN
Sbjct: 241 KYHEEAMQIN 250

[Close]

BLAST of HG10021981 vs. ExPASy TrEMBL
Match: A0A1S3C5R6 (THO complex subunit 4A OS=Cucumis melo OX=3656 GN=LOC103497214 PE=4 SV=1)

HSP 1 Score: 431.8 bits (1109), Expect = 1.9e-117
Identity = 230/249 (92.37%), Postives = 235/249 (94.38%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRPAPYSTAKAPETA 60
           MAEPLDMSLDDIIKNNKKSGSSNFR RGGASSGPGPSRRFRNRGLNR  PYST+KAPETA
Sbjct: 1   MAEPLDMSLDDIIKNNKKSGSSNFRARGGASSGPGPSRRFRNRGLNRATPYSTSKAPETA 60

Query: 61  WSHDMFVDQGAAYPSQPPRASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 120
           WSHDMFVD GAAYPS PPRASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY
Sbjct: 61  WSHDMFVDHGAAYPSHPPRASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 120

Query: 121 DKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKLEIVGTNTVTPAVPASSNASFG 180
           DKSGRSKGTAEI+FSR +DALAAIKRYNNVQLDGKPMKLEIVGTN VTPAVPA SNASFG
Sbjct: 121 DKSGRSKGTAEILFSRPADALAAIKRYNNVQLDGKPMKLEIVGTNIVTPAVPAPSNASFG 180

Query: 181 NPNGFPRGGRALGRIRGGGRGRGPGRGGRGRGSGSGSGSGSGRGRGEKLSAEDLDADLEK 240
           N NGFPRGGRA+GR RGGGRGRGPGRGGRGR    GSGSGSGRGRGEKLSAEDLDADL+K
Sbjct: 181 NHNGFPRGGRAMGRNRGGGRGRGPGRGGRGR----GSGSGSGRGRGEKLSAEDLDADLDK 240

Query: 241 YHEEAMQIN 250
           YHEEAMQIN
Sbjct: 241 YHEEAMQIN 245

[Close]

BLAST of HG10021981 vs. ExPASy TrEMBL
Match: A0A6J1HLI4 (THO complex subunit 4B-like OS=Cucurbita moschata OX=3662 GN=LOC111464665 PE=4 SV=1)

HSP 1 Score: 422.2 bits (1084), Expect = 1.5e-114
Identity = 226/249 (90.76%), Postives = 231/249 (92.77%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRPAPYSTAKAPETA 60
           MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNR APYSTA+APETA
Sbjct: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSTAQAPETA 60

Query: 61  WSHDMFVDQGAAYPSQPPRASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 120
           WSHDMFVD G+AYPSQP RASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY
Sbjct: 61  WSHDMFVDHGSAYPSQPARASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 120

Query: 121 DKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKLEIVGTNTVTPAVPASSNASFG 180
           DKSGRSKGTAEIVFSRQ+DALAAIKRYNNVQLDGK MKLEIVGTN VTPAVPAS+N +FG
Sbjct: 121 DKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLEIVGTNIVTPAVPASANGNFG 180

Query: 181 NPNGFPRGGRALGRIRGGGRGRGPGRGGRGRGSGSGSGSGSGRGRGEKLSAEDLDADLEK 240
           NPNGF RGG  LGR RGGGRGRGPGRGGRGRGS       S RGRGEKLSAEDLDADLEK
Sbjct: 181 NPNGFRRGGHVLGRNRGGGRGRGPGRGGRGRGS-------SSRGRGEKLSAEDLDADLEK 240

Query: 241 YHEEAMQIN 250
           YHEEAMQIN
Sbjct: 241 YHEEAMQIN 242

[Close]

BLAST of HG10021981 vs. ExPASy TrEMBL
Match: A0A6J1I3N4 (THO complex subunit 4A-like OS=Cucurbita maxima OX=3661 GN=LOC111469372 PE=4 SV=1)

HSP 1 Score: 421.0 bits (1081), Expect = 3.4e-114
Identity = 226/249 (90.76%), Postives = 230/249 (92.37%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRPAPYSTAKAPETA 60
           MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNR APYSTA+APETA
Sbjct: 37  MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSTAQAPETA 96

Query: 61  WSHDMFVDQGAAYPSQPPRASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 120
           WSHDMFVD GAAYPSQP RASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY
Sbjct: 97  WSHDMFVDHGAAYPSQPARASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 156

Query: 121 DKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKLEIVGTNTVTPAVPASSNASFG 180
           DKSGRSKGTAEIVFSRQ+DALAAIKRYNNVQLDGK MKLEIVGTN VTPAVPAS+N +FG
Sbjct: 157 DKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKLMKLEIVGTNIVTPAVPASANGNFG 216

Query: 181 NPNGFPRGGRALGRIRGGGRGRGPGRGGRGRGSGSGSGSGSGRGRGEKLSAEDLDADLEK 240
           NPNGF RGG  LGR RGGGRGRGPGRGGRG GS       S RGRGEKLSAEDLDADLEK
Sbjct: 217 NPNGFRRGGHVLGRNRGGGRGRGPGRGGRGHGS-------SSRGRGEKLSAEDLDADLEK 276

Query: 241 YHEEAMQIN 250
           YHEEAMQIN
Sbjct: 277 YHEEAMQIN 278

[Close]

BLAST of HG10021981 vs. ExPASy TrEMBL
Match: A0A6J1G9Y5 (THO complex subunit 4A-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111452298 PE=4 SV=1)

HSP 1 Score: 398.7 bits (1023), Expect = 1.8e-107
Identity = 213/249 (85.54%), Postives = 221/249 (88.76%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRPAPYSTAKAPETA 60
           M +PLD SLDDIIKNNKKSGSSNFRGRGGASSGP PSRRF NRGLNR APYS AKAPET 
Sbjct: 1   MVDPLDTSLDDIIKNNKKSGSSNFRGRGGASSGPAPSRRFYNRGLNRAAPYSRAKAPETP 60

Query: 61  WSHDMFVDQGAAYPSQPPRASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 120
           WSHD+FVD G AYPS P RAS IETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY
Sbjct: 61  WSHDLFVDHGVAYPSHPARASTIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 120

Query: 121 DKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKLEIVGTNTVTPAVPASSNASFG 180
           DKSGRSKGTAE+VFSRQ+DALAAIKRYNNVQLDGKPMKLEIVG N VTP +PASSN +FG
Sbjct: 121 DKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLPASSNPNFG 180

Query: 181 NPNGFPRGGRALGRIRGGGRGRGPGRGGRGRGSGSGSGSGSGRGRGEKLSAEDLDADLEK 240
           N +GF RGGRALGR RGGGRGRGPGRGGRGR        G+GRG GEKLSAEDLDADLEK
Sbjct: 181 NSSGFLRGGRALGRNRGGGRGRGPGRGGRGR--------GNGRGGGEKLSAEDLDADLEK 240

Query: 241 YHEEAMQIN 250
           YHEEAMQIN
Sbjct: 241 YHEEAMQIN 241

[Close]

BLAST of HG10021981 vs. TAIR 10
Match: AT5G59950.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 246.5 bits (628), Expect = 2.2e-65
Identity = 155/253 (61.26%), Postives = 188/253 (74.31%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRG-GASSGPGPSRRFR-NRGLNRPAPYSTAKAPE 60
           M+  LDMSLDD+I  N+KS       RG G+ SGPGP+RR   NR   R APY +AKAPE
Sbjct: 1   MSTGLDMSLDDMIAKNRKSRGGAGPARGTGSGSGPGPTRRNNPNRKSTRSAPYQSAKAPE 60

Query: 61  TAWSHDMFVDQGAAYPSQPPRASA-IETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYS 120
           + W HDMF D+   + S   R+SA IETGTKLY+SNLDYGV NEDIKELF+EVG+LKRY+
Sbjct: 61  STWGHDMFSDRSEDHRS--GRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYT 120

Query: 121 INYDKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKLEIVGTNTVTPAVPASSNA 180
           +++D+SGRSKGTAE+V+SR+ DALAA+K+YN+VQLDGKPMK+EIVGTN  T A P+   A
Sbjct: 121 VHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNLQTAAAPSGRPA 180

Query: 181 SFGNPNGFP-RGGRALGRIRGGGRGRGPGRGGRGRGSGSGSGSGSGRGRGEKLSAEDLDA 240
           + GN NG P RGG+  GR   GG+ RG GRGG GRG G G G   G+G  EK+SAEDLDA
Sbjct: 181 N-GNSNGAPWRGGQ--GR---GGQQRGGGRGGGGRG-GGGRGRRPGKGPAEKISAEDLDA 240

Query: 241 DLEKYHEEAMQIN 250
           DL+KYH   M+ N
Sbjct: 241 DLDKYHSGDMETN 244

[Close]

BLAST of HG10021981 vs. TAIR 10
Match: AT5G59950.5 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 246.1 bits (627), Expect = 2.9e-65
Identity = 155/254 (61.02%), Postives = 188/254 (74.02%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRG-GASSGPGPSRRFR-NRGLNRPAPYSTAKAPE 60
           M+  LDMSLDD+I  N+KS       RG G+ SGPGP+RR   NR   R APY +AKAPE
Sbjct: 1   MSTGLDMSLDDMIAKNRKSRGGAGPARGTGSGSGPGPTRRNNPNRKSTRSAPYQSAKAPE 60

Query: 61  TAWSHDMFVDQGAAYPSQPPRASA-IETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYS 120
           + W HDMF D+   + S   R+SA IETGTKLY+SNLDYGV NEDIKELF+EVG+LKRY+
Sbjct: 61  STWGHDMFSDRSEDHRS--GRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYT 120

Query: 121 INYDKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKLEIVGTNTVTPAVPASSNA 180
           +++D+SGRSKGTAE+V+SR+ DALAA+K+YN+VQLDGKPMK+EIVGTN  T A P+   A
Sbjct: 121 VHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNLQTAAAPSGRPA 180

Query: 181 SFGNPNGFP--RGGRALGRIRGGGRGRGPGRGGRGRGSGSGSGSGSGRGRGEKLSAEDLD 240
           + GN NG P  RGG+  GR   GG+ RG GRGG GRG G G G   G+G  EK+SAEDLD
Sbjct: 181 N-GNSNGAPWSRGGQ--GR---GGQQRGGGRGGGGRG-GGGRGRRPGKGPAEKISAEDLD 240

Query: 241 ADLEKYHEEAMQIN 250
           ADL+KYH   M+ N
Sbjct: 241 ADLDKYHSGDMETN 245

[Close]

BLAST of HG10021981 vs. TAIR 10
Match: AT5G59950.3 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 238.0 bits (606), Expect = 7.9e-63
Identity = 153/253 (60.47%), Postives = 186/253 (73.52%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRG-GASSGPGPSRRFR-NRGLNRPAPYSTAKAPE 60
           M+  LDMSLDD+I  N+KS       RG G+ SGPGP+RR   NR   R APY +  APE
Sbjct: 1   MSTGLDMSLDDMIAKNRKSRGGAGPARGTGSGSGPGPTRRNNPNRKSTRSAPYQS--APE 60

Query: 61  TAWSHDMFVDQGAAYPSQPPRASA-IETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYS 120
           + W HDMF D+   + S   R+SA IETGTKLY+SNLDYGV NEDIKELF+EVG+LKRY+
Sbjct: 61  STWGHDMFSDRSEDHRS--GRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYT 120

Query: 121 INYDKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKLEIVGTNTVTPAVPASSNA 180
           +++D+SGRSKGTAE+V+SR+ DALAA+K+YN+VQLDGKPMK+EIVGTN  T A P+   A
Sbjct: 121 VHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNLQTAAAPSGRPA 180

Query: 181 SFGNPNGFP-RGGRALGRIRGGGRGRGPGRGGRGRGSGSGSGSGSGRGRGEKLSAEDLDA 240
           + GN NG P RGG+  GR   GG+ RG GRGG GRG G G G   G+G  EK+SAEDLDA
Sbjct: 181 N-GNSNGAPWRGGQ--GR---GGQQRGGGRGGGGRG-GGGRGRRPGKGPAEKISAEDLDA 240

Query: 241 DLEKYHEEAMQIN 250
           DL+KYH   M+ N
Sbjct: 241 DLDKYHSGDMETN 242

[Close]

BLAST of HG10021981 vs. TAIR 10
Match: AT5G02530.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 237.3 bits (604), Expect = 1.4e-62
Identity = 160/289 (55.36%), Postives = 186/289 (64.36%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKNNKK----------SGSSNFRGRGGASSGPGPSRRFRNRGLNRPAP 60
           M+  LDMSLDDIIK+N+K           G +N  GRGG+ S  GPSRRF NR   R AP
Sbjct: 1   MSGGLDMSLDDIIKSNRKPTGSRGRGGIGGGNNTGGRGGSGSNSGPSRRFANRVGARTAP 60

Query: 61  YS----TAKAPETAWSHDMFVDQ---GAAYPSQPPR----ASAIETGTKLYVSNLDYGVS 120
           YS      +A +  W +D+F       AA+           S+IETGTKLY+SNLDYGVS
Sbjct: 61  YSRPIQQQQAHDAMWQNDVFATDASVAAAFGHHQTAVVGGGSSIETGTKLYISNLDYGVS 120

Query: 121 NEDIKELFSEVGDLKRYSINYDKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKL 180
           NEDIKELFSEVGDLKRY I+YD+SGRSKGTAE+VFSR+ DALAA+KRYNNVQLDGK MK+
Sbjct: 121 NEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVKRYNNVQLDGKLMKI 180

Query: 181 EIVGTNTVTPAVPASSNASF--------------------GNPNGFPRG-GRALGRIRGG 240
           EIVGTN   PA+P  + A                      GN NG  RG G  +GR RGG
Sbjct: 181 EIVGTNLSAPALPILATAQIPFPTNGILGNFNENFNGNFNGNFNGNFRGRGGFMGRPRGG 240

Query: 241 GRGRGPGRGGRGRGSGSGSGSGSGRGRGEKLSAEDLDADLEKYHEEAMQ 248
           G G G  RGGRG     G GSG GRGR E +SAEDLDA+L+KYH+EAM+
Sbjct: 241 GFGGGNFRGGRGARGRGGRGSG-GRGRDENVSAEDLDAELDKYHKEAME 288

[Close]

BLAST of HG10021981 vs. TAIR 10
Match: AT5G02530.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 236.5 bits (602), Expect = 2.3e-62
Identity = 160/291 (54.98%), Postives = 186/291 (63.92%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKNNKK----------SGSSNFRGRGGASSGPGPSRRFRNRGLNRPAP 60
           M+  LDMSLDDIIK+N+K           G +N  GRGG+ S  GPSRRF NR   R AP
Sbjct: 1   MSGGLDMSLDDIIKSNRKPTGSRGRGGIGGGNNTGGRGGSGSNSGPSRRFANRVGARTAP 60

Query: 61  YS----TAKAPETAWSHDMFVDQ---GAAYPSQPPR----ASAIETGTKLYVSNLDYGVS 120
           YS      +A +  W +D+F       AA+           S+IETGTKLY+SNLDYGVS
Sbjct: 61  YSRPIQQQQAHDAMWQNDVFATDASVAAAFGHHQTAVVGGGSSIETGTKLYISNLDYGVS 120

Query: 121 NEDIKELFSEVGDLKRYSINYDKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKL 180
           NEDIKELFSEVGDLKRY I+YD+SGRSKGTAE+VFSR+ DALAA+KRYNNVQLDGK MK+
Sbjct: 121 NEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVKRYNNVQLDGKLMKI 180

Query: 181 EIVGTNTVTPAVPASSNASF--------------------GNPNGFPRG---GRALGRIR 240
           EIVGTN   PA+P  + A                      GN NG  RG   G  +GR R
Sbjct: 181 EIVGTNLSAPALPILATAQIPFPTNGILGNFNENFNGNFNGNFNGNFRGRGRGGFMGRPR 240

Query: 241 GGGRGRGPGRGGRGRGSGSGSGSGSGRGRGEKLSAEDLDADLEKYHEEAMQ 248
           GGG G G  RGGRG     G GSG GRGR E +SAEDLDA+L+KYH+EAM+
Sbjct: 241 GGGFGGGNFRGGRGARGRGGRGSG-GRGRDENVSAEDLDAELDKYHKEAME 290

The following BLAST results are available for this feature:

BLAST of HG10021981 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038895300.1	7.8e-121	95.18	THO complex subunit 4A-like [Benincasa hispida] >XP_038895301.1 THO complex subu...	[more]
XP_004149042.2	3.9e-120	94.00	THO complex subunit 4A isoform X1 [Cucumis sativus] >KGN65665.1 hypothetical pro...	[more]
XP_008457549.1	4.0e-117	92.37	PREDICTED: THO complex subunit 4A [Cucumis melo]	[more]
KAG6583468.1	1.9e-114	90.76	THO complex subunit 4A, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022964653.1	3.2e-114	90.76	THO complex subunit 4B-like [Cucurbita moschata]	[more]

BLAST of HG10021981 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L773	3.1e-64	61.26	THO complex subunit 4A OS=Arabidopsis thaliana OX=3702 GN=ALY1 PE=1 SV=1	[more]
Q8L719	3.3e-61	54.98	THO complex subunit 4B OS=Arabidopsis thaliana OX=3702 GN=ALY2 PE=1 SV=1	[more]
Q6NQ72	4.1e-40	43.30	THO complex subunit 4D OS=Arabidopsis thaliana OX=3702 GN=ALY4 PE=1 SV=1	[more]
B5FXN8	2.1e-39	44.53	THO complex subunit 4 OS=Taeniopygia guttata OX=59729 GN=ALYREF PE=2 SV=1	[more]
O08583	2.8e-36	42.70	THO complex subunit 4 OS=Mus musculus OX=10090 GN=Alyref PE=1 SV=3	[more]

BLAST of HG10021981 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LUQ3	1.9e-120	94.00	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G480690 PE=4 SV...	[more]
A0A1S3C5R6	1.9e-117	92.37	THO complex subunit 4A OS=Cucumis melo OX=3656 GN=LOC103497214 PE=4 SV=1	[more]
A0A6J1HLI4	1.5e-114	90.76	THO complex subunit 4B-like OS=Cucurbita moschata OX=3662 GN=LOC111464665 PE=4 S...	[more]
A0A6J1I3N4	3.4e-114	90.76	THO complex subunit 4A-like OS=Cucurbita maxima OX=3661 GN=LOC111469372 PE=4 SV=...	[more]
A0A6J1G9Y5	1.8e-107	85.54	THO complex subunit 4A-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC11145...	[more]

BLAST of HG10021981 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G59950.1	2.2e-65	61.26	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G59950.5	2.9e-65	61.02	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G59950.3	7.9e-63	60.47	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G02530.2	1.4e-62	55.36	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G02530.1	2.3e-62	54.98	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 231..249
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 171..249
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 226..249
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..57
None	No IPR available	PANTHER	PTHR19965:SF74	CHROMATIN TARGET OF PRMT1 PROTEIN-RELATED	coord: 1..248
None	No IPR available	PANTHER	PTHR19965	RNA AND EXPORT FACTOR BINDING PROTEIN	coord: 1..248
None	No IPR available	CDD	cd12680	RRM_THOC4	coord: 87..161 e-value: 1.28502E-44 score: 142.779
IPR025715	Chromatin target of PRMT1 protein, C-terminal	SMART	SM01218	FoP_duplication_2	coord: 175..249 e-value: 1.6E-12 score: 57.6
IPR025715	Chromatin target of PRMT1 protein, C-terminal	PFAM	PF13865	FoP_duplication	coord: 188..242 e-value: 4.3E-7 score: 30.5
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 88..160 e-value: 1.7E-19 score: 80.8
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 89..157 e-value: 6.6E-16 score: 57.9
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 87..164 score: 16.3978
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 69..229 e-value: 5.2E-27 score: 96.6
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 53..165

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10021981.1	HG10021981.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006406	mRNA export from nucleus
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding