HG10021929 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10021929
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	cyclin-dependent protein kinase inhibitor SMR3-like
Location	Chr05: 18472219 .. 18472578 (+)
RNA-Seq Expression	HG10021929
Synteny	HG10021929

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCTCTTCAATTCAAGTATTTTGCTCTCTGAAAATGATGTAAACGCTATGGAATTCACTTTTCTTCTTACATATGTCAATTCCAAAGAAGAAGAAGAAGAGAAAAATGGAAGCAACAACTTAGTTGTTGAAGATGATGACAATGGGTTCAAAACTCCAACATCTTTGGAGCATAAAATTCCCACAAGTCTCCGGTGTCCGATGGCGCCGAGGAAACCGAAACCTCGGCCGTTGACGAAGCGGAAGGCGGTGGAACGACACCGTTTGTTGCTGGATCTTTCCTCTGAGATTCAGTCTTTGTTTCCAGCTGATTTTCTTGTAGGCCTTGGTGGTAAGATCAAGAGGGTTAGACAATAA

mRNA sequence

ATGGGTCTCTTCAATTCAAGTATTTTGCTCTCTGAAAATGATGTAAACGCTATGGAATTCACTTTTCTTCTTACATATGTCAATTCCAAAGAAGAAGAAGAAGAGAAAAATGGAAGCAACAACTTAGTTGTTGAAGATGATGACAATGGGTTCAAAACTCCAACATCTTTGGAGCATAAAATTCCCACAAGTCTCCGGTGTCCGATGGCGCCGAGGAAACCGAAACCTCGGCCGTTGACGAAGCGGAAGGCGGTGGAACGACACCGTTTGTTGCTGGATCTTTCCTCTGAGATTCAGTCTTTGTTTCCAGCTGATTTTCTTGTAGGCCTTGGTGGTAAGATCAAGAGGGTTAGACAATAA

Coding sequence (CDS)

ATGGGTCTCTTCAATTCAAGTATTTTGCTCTCTGAAAATGATGTAAACGCTATGGAATTCACTTTTCTTCTTACATATGTCAATTCCAAAGAAGAAGAAGAAGAGAAAAATGGAAGCAACAACTTAGTTGTTGAAGATGATGACAATGGGTTCAAAACTCCAACATCTTTGGAGCATAAAATTCCCACAAGTCTCCGGTGTCCGATGGCGCCGAGGAAACCGAAACCTCGGCCGTTGACGAAGCGGAAGGCGGTGGAACGACACCGTTTGTTGCTGGATCTTTCCTCTGAGATTCAGTCTTTGTTTCCAGCTGATTTTCTTGTAGGCCTTGGTGGTAAGATCAAGAGGGTTAGACAATAA

Protein sequence

MGLFNSSILLSENDVNAMEFTFLLTYVNSKEEEEEKNGSNNLVVEDDDNGFKTPTSLEHKIPTSLRCPMAPRKPKPRPLTKRKAVERHRLLLDLSSEIQSLFPADFLVGLGGKIKRVRQ

Homology

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BLAST of HG10021929 vs. NCBI nr
Match: XP_011658114.1 (cyclin-dependent protein kinase inhibitor SMR3 [Cucumis sativus] >KGN65712.1 hypothetical protein Csa_019570 [Cucumis sativus])

HSP 1 Score: 200.3 bits (508), Expect = 9.4e-48
Identity = 105/126 (83.33%), Postives = 113/126 (89.68%), Query Frame = 0


Query: 1   MGLFNSSILLSENDVNAMEFTFLLTYVNSKEEEEEK-------NGSNNLVVEDDDNGFKT 60
           MGLFNSSILLSENDVN+MEFTFLL YVNSKE+++E+       NG  +  VEDDDNGFKT
Sbjct: 1   MGLFNSSILLSENDVNSMEFTFLLRYVNSKEDDQEEDGQEETLNGGRSNSVEDDDNGFKT 60

Query: 61  PTSLEHKIPTSLRCPMAPRKPKPRPLTKRKAVERHRLLLDLSSEIQSLFPADFLVGLGGK 120
           PTSLEHKIPTSL+CPMAPRKPKPR LTKRKAVERHRLLLDLSSEIQSLFPA+FLVGLGGK
Sbjct: 61  PTSLEHKIPTSLQCPMAPRKPKPRRLTKRKAVERHRLLLDLSSEIQSLFPAEFLVGLGGK 120

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BLAST of HG10021929 vs. NCBI nr
Match: XP_016902107.1 (PREDICTED: cyclin-dependent protein kinase inhibitor SMR3-like [Cucumis melo] >KAA0067708.1 cyclin-dependent protein kinase inhibitor SMR3-like [Cucumis melo var. makuwa] >TYK21932.1 cyclin-dependent protein kinase inhibitor SMR3-like [Cucumis melo var. makuwa])

HSP 1 Score: 198.0 bits (502), Expect = 4.7e-47
Identity = 105/128 (82.03%), Postives = 115/128 (89.84%), Query Frame = 0


Query: 1   MGL--FNSSILLSENDVNAMEFTFLLTYVNSKEEEEEK-------NGSNNLVVEDDDNGF 60
           MGL  FNSSILLSENDVN+MEFTFLL YVNSKE+++E+       NG +N VV+DDDNGF
Sbjct: 1   MGLFDFNSSILLSENDVNSMEFTFLLRYVNSKEDDQEEDRQEETLNGRSNSVVQDDDNGF 60

Query: 61  KTPTSLEHKIPTSLRCPMAPRKPKPRPLTKRKAVERHRLLLDLSSEIQSLFPADFLVGLG 120
           KTPTSLEHKIPTS++CPMAPRKPKPR LTKRKAVERHRLLLDLSSEIQSLFPA+FLVGLG
Sbjct: 61  KTPTSLEHKIPTSIQCPMAPRKPKPRRLTKRKAVERHRLLLDLSSEIQSLFPAEFLVGLG 120

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BLAST of HG10021929 vs. NCBI nr
Match: KAG7036922.1 (hypothetical protein SDJN02_00542, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 174.5 bits (441), Expect = 5.5e-40
Identity = 90/117 (76.92%), Postives = 102/117 (87.18%), Query Frame = 0


Query: 1   MGLFNSSILLSENDVNAMEFTFLLTYVNSKEEEEEKNGSNNLVVEDDDNGFKTPTSLEHK 60
           M LFNS+ILLSENDV+AMEFTFLLTY+ SK ++ + +  +   V+DDDNGFKTPTSLEHK
Sbjct: 1   MALFNSTILLSENDVSAMEFTFLLTYLTSKHQDHDLDHESK-SVQDDDNGFKTPTSLEHK 60

Query: 61  IPTSLRCPMAPRKPKPRPLTKRKAVERHRLLLDLSSEIQSLFPADFLVGLGGKIKRV 118
           IP SLRCPMAPRKPK RP+ KRKAVER RL LDLSSEIQSLFPADFLVGLGGK+KR+
Sbjct: 61  IPASLRCPMAPRKPKSRPMMKRKAVERQRLFLDLSSEIQSLFPADFLVGLGGKMKRL 116

[Close]

BLAST of HG10021929 vs. NCBI nr
Match: KAG6607237.1 (hypothetical protein SDJN03_00579, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 168.7 bits (426), Expect = 3.0e-38
Identity = 88/112 (78.57%), Postives = 97/112 (86.61%), Query Frame = 0


Query: 1   MGLFNSSILLSENDVNAMEFTFLLTYVNSKEEEEEKNGSNNLVVEDDDNGFKTPTSLEHK 60
           M LFNS+ILLSENDV+AMEFTFLLTY+ SK ++ + +  +   VEDDDNGFKTPTSLEHK
Sbjct: 1   MALFNSTILLSENDVSAMEFTFLLTYLTSKHQDHDLDHESK-SVEDDDNGFKTPTSLEHK 60

Query: 61  IPTSLRCPMAPRKPKPRPLTKRKAVERHRLLLDLSSEIQSLFPADFLVGLGG 113
           IP SLRCPMAPRKPK RP+ KRKAVER RL LDLSSEIQSLFPADFLVGLGG
Sbjct: 61  IPASLRCPMAPRKPKSRPMMKRKAVERQRLFLDLSSEIQSLFPADFLVGLGG 111

[Close]

BLAST of HG10021929 vs. NCBI nr
Match: KAE8039043.1 (hypothetical protein FH972_011491 [Carpinus fangiana])

HSP 1 Score: 115.5 bits (288), Expect = 3.1e-22
Identity = 71/145 (48.97%), Postives = 91/145 (62.76%), Query Frame = 0


Query: 1   MGLFNSSILLSENDVNAMEFTFLL-------------TYVNSKEEEEEKNGSNNLV---- 60
           MG+ +S + LSE D+NAMEF FL+               V  +EEEEE+N     +    
Sbjct: 11  MGVSDSQMFLSEKDLNAMEFNFLVPPTLEFQEDHGKPEVVKQEEEEEEENKKKKKINIPS 70

Query: 61  --------VEDDDNGFKTPTSLEHKIPTSLRCPMAPRKPKPRPLTKRKAVERHRLLLDLS 120
                   VEDD++GFKTPTSL+HKIP  L+CP APRKPK  PLTKRKA  R R+LLDLS
Sbjct: 71  VTVGEFRDVEDDEDGFKTPTSLDHKIPAILQCPPAPRKPKTIPLTKRKAA-RQRILLDLS 130

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BLAST of HG10021929 vs. ExPASy Swiss-Prot
Match: Q9LZ60 (Cyclin-dependent protein kinase inhibitor SMR3 OS=Arabidopsis thaliana OX=3702 GN=SMR3 PE=1 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 6.6e-04
Identity = 30/64 (46.88%), Postives = 38/64 (59.38%), Query Frame = 0


Query: 46  DDDNGFKTPTSLEHKIP--TSLRCPMAPRKPKPRPL--TKRKAVE---RHRLLLDLSSEI 103
           +++ G KTPTS +HKIP      CP APRKPKP     TKRK       +R+ +DLS EI
Sbjct: 39  NEEEGCKTPTSSDHKIPEVKYTLCPPAPRKPKPNRSSGTKRKLTPVNVVNRIPIDLSREI 98

[Close]

BLAST of HG10021929 vs. ExPASy TrEMBL
Match: A0A0A0LY05 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G506960 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 4.6e-48
Identity = 105/126 (83.33%), Postives = 113/126 (89.68%), Query Frame = 0


Query: 1   MGLFNSSILLSENDVNAMEFTFLLTYVNSKEEEEEK-------NGSNNLVVEDDDNGFKT 60
           MGLFNSSILLSENDVN+MEFTFLL YVNSKE+++E+       NG  +  VEDDDNGFKT
Sbjct: 1   MGLFNSSILLSENDVNSMEFTFLLRYVNSKEDDQEEDGQEETLNGGRSNSVEDDDNGFKT 60

Query: 61  PTSLEHKIPTSLRCPMAPRKPKPRPLTKRKAVERHRLLLDLSSEIQSLFPADFLVGLGGK 120
           PTSLEHKIPTSL+CPMAPRKPKPR LTKRKAVERHRLLLDLSSEIQSLFPA+FLVGLGGK
Sbjct: 61  PTSLEHKIPTSLQCPMAPRKPKPRRLTKRKAVERHRLLLDLSSEIQSLFPAEFLVGLGGK 120

[Close]

BLAST of HG10021929 vs. ExPASy TrEMBL
Match: A0A5A7VIY0 (Cyclin-dependent protein kinase inhibitor SMR3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold710G00040 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 2.3e-47
Identity = 105/128 (82.03%), Postives = 115/128 (89.84%), Query Frame = 0


Query: 1   MGL--FNSSILLSENDVNAMEFTFLLTYVNSKEEEEEK-------NGSNNLVVEDDDNGF 60
           MGL  FNSSILLSENDVN+MEFTFLL YVNSKE+++E+       NG +N VV+DDDNGF
Sbjct: 1   MGLFDFNSSILLSENDVNSMEFTFLLRYVNSKEDDQEEDRQEETLNGRSNSVVQDDDNGF 60

Query: 61  KTPTSLEHKIPTSLRCPMAPRKPKPRPLTKRKAVERHRLLLDLSSEIQSLFPADFLVGLG 120
           KTPTSLEHKIPTS++CPMAPRKPKPR LTKRKAVERHRLLLDLSSEIQSLFPA+FLVGLG
Sbjct: 61  KTPTSLEHKIPTSIQCPMAPRKPKPRRLTKRKAVERHRLLLDLSSEIQSLFPAEFLVGLG 120

[Close]

BLAST of HG10021929 vs. ExPASy TrEMBL
Match: A0A1S4E1K5 (cyclin-dependent protein kinase inhibitor SMR3-like OS=Cucumis melo OX=3656 GN=LOC107991540 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 2.3e-47
Identity = 105/128 (82.03%), Postives = 115/128 (89.84%), Query Frame = 0


Query: 1   MGL--FNSSILLSENDVNAMEFTFLLTYVNSKEEEEEK-------NGSNNLVVEDDDNGF 60
           MGL  FNSSILLSENDVN+MEFTFLL YVNSKE+++E+       NG +N VV+DDDNGF
Sbjct: 1   MGLFDFNSSILLSENDVNSMEFTFLLRYVNSKEDDQEEDRQEETLNGRSNSVVQDDDNGF 60

Query: 61  KTPTSLEHKIPTSLRCPMAPRKPKPRPLTKRKAVERHRLLLDLSSEIQSLFPADFLVGLG 120
           KTPTSLEHKIPTS++CPMAPRKPKPR LTKRKAVERHRLLLDLSSEIQSLFPA+FLVGLG
Sbjct: 61  KTPTSLEHKIPTSIQCPMAPRKPKPRRLTKRKAVERHRLLLDLSSEIQSLFPAEFLVGLG 120

[Close]

BLAST of HG10021929 vs. ExPASy TrEMBL
Match: A0A660KRH4 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_011491 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.5e-22
Identity = 71/145 (48.97%), Postives = 91/145 (62.76%), Query Frame = 0


Query: 1   MGLFNSSILLSENDVNAMEFTFLL-------------TYVNSKEEEEEKNGSNNLV---- 60
           MG+ +S + LSE D+NAMEF FL+               V  +EEEEE+N     +    
Sbjct: 11  MGVSDSQMFLSEKDLNAMEFNFLVPPTLEFQEDHGKPEVVKQEEEEEEENKKKKKINIPS 70

Query: 61  --------VEDDDNGFKTPTSLEHKIPTSLRCPMAPRKPKPRPLTKRKAVERHRLLLDLS 120
                   VEDD++GFKTPTSL+HKIP  L+CP APRKPK  PLTKRKA  R R+LLDLS
Sbjct: 71  VTVGEFRDVEDDEDGFKTPTSLDHKIPAILQCPPAPRKPKTIPLTKRKAA-RQRILLDLS 130

[Close]

BLAST of HG10021929 vs. ExPASy TrEMBL
Match: A0A2N9ECP2 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS397 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 2.4e-20
Identity = 71/150 (47.33%), Postives = 90/150 (60.00%), Query Frame = 0


Query: 1   MGLFNSSILLSENDVNAMEFTFLL-----------------TYVNSKEEEEEKNGSNNLV 60
           MG+ +S   LSE D+NAME  FL+                   V  +++EEE++   N+ 
Sbjct: 11  MGVSDSQRFLSEKDLNAMELNFLVRPTLDFQEEDHDQLSKKPEVKEEKQEEEEDKCKNIA 70

Query: 61  V------------EDDDN-GFKTPTSLEHKIPTSLRCPMAPRKPKPR--PLTKRKAVERH 119
           V            ED+DN GFKTPTSL+HKIP  L+CP APRKPKP+  P TKRKA  R 
Sbjct: 71  VSSLKLKIPCSVEEDEDNDGFKTPTSLDHKIPVILQCPPAPRKPKPKSIPSTKRKA-GRR 130

[Close]

BLAST of HG10021929 vs. TAIR 10
Match: AT5G02420.1 (unknown protein; Has 90 Blast hits to 90 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 45.1 bits (105), Expect = 4.7e-05
Identity = 30/64 (46.88%), Postives = 38/64 (59.38%), Query Frame = 0


Query: 46  DDDNGFKTPTSLEHKIP--TSLRCPMAPRKPKPRPL--TKRKAVE---RHRLLLDLSSEI 103
           +++ G KTPTS +HKIP      CP APRKPKP     TKRK       +R+ +DLS EI
Sbjct: 39  NEEEGCKTPTSSDHKIPEVKYTLCPPAPRKPKPNRSSGTKRKLTPVNVVNRIPIDLSREI 98

[Close]

BLAST of HG10021929 vs. TAIR 10
Match: AT5G59360.1 (unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 44.3 bits (103), Expect = 8.0e-05
Identity = 27/88 (30.68%), Postives = 44/88 (50.00%), Query Frame = 0


Query: 33  EEEKNGSNNLVVEDDDNGFKTPTSLEHKIPTSLRCPMAPRKPKPRPLTKRKA--VERHRL 92
           ++   G      +D+++  K P +  +        P  PRKPK  P  KR+   V+R  +
Sbjct: 66  QDGSRGKRKWECKDEESPVKIPETPRNSNSVCYCPPRPPRKPKAIPSMKRRGMWVKRSVV 125

Query: 93  LLDLSSEIQSLFPADFLVGLGGKIKRVR 119
            LD++ E++S+FP   L   G KIK+ R
Sbjct: 126 FLDVAREVESMFPPSVLQDFGKKIKKAR 153

The following BLAST results are available for this feature:

BLAST of HG10021929 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011658114.1	9.4e-48	83.33	cyclin-dependent protein kinase inhibitor SMR3 [Cucumis sativus] >KGN65712.1 hyp...	[more]
XP_016902107.1	4.7e-47	82.03	PREDICTED: cyclin-dependent protein kinase inhibitor SMR3-like [Cucumis melo] >K...	[more]
KAG7036922.1	5.5e-40	76.92	hypothetical protein SDJN02_00542, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6607237.1	3.0e-38	78.57	hypothetical protein SDJN03_00579, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAE8039043.1	3.1e-22	48.97	hypothetical protein FH972_011491 [Carpinus fangiana]	[more]

BLAST of HG10021929 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LZ60	6.6e-04	46.88	Cyclin-dependent protein kinase inhibitor SMR3 OS=Arabidopsis thaliana OX=3702 G...	[more]

BLAST of HG10021929 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LY05	4.6e-48	83.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G506960 PE=4 SV=1	[more]
A0A5A7VIY0	2.3e-47	82.03	Cyclin-dependent protein kinase inhibitor SMR3-like OS=Cucumis melo var. makuwa ...	[more]
A0A1S4E1K5	2.3e-47	82.03	cyclin-dependent protein kinase inhibitor SMR3-like OS=Cucumis melo OX=3656 GN=L...	[more]
A0A660KRH4	1.5e-22	48.97	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_011491 PE=4 SV=1	[more]
A0A2N9ECP2	2.4e-20	47.33	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS397 PE=4 SV=1	[more]

BLAST of HG10021929 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G02420.1	4.7e-05	46.88	unknown protein; Has 90 Blast hits to 90 proteins in 10 species: Archae - 0; Bac...	[more]
AT5G59360.1	8.0e-05	30.68	unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..59
None	No IPR available	PANTHER	PTHR33142:SF66	CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR SMR2-LIKE	coord: 29..119
IPR040389	Cyclin-dependent protein kinase inhibitor SMR	PANTHER	PTHR33142	CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR SMR13	coord: 29..119

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10021929.1	HG10021929.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045839	negative regulation of mitotic nuclear division
biological_process	GO:0032875	regulation of DNA endoreduplication
cellular_component	GO:0005634	nucleus