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HG10021925 (gene) Bottle gourd (Hangzhou Gourd) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCATCGCTGCCGTTTGTTGCCACTCCACCGGCGACACCGCCCAATTTTGAACTGACTTCGACGGATAAGTATTTGGCTGTGACTGCCATGCTTACCGTTATTATACTATACTTCATCGGCTTCAGTTCTATACAGAAAAAGAAATAATGACTCGGAATCCACCAGTGCGGTGGCCGGACCAATGCCGGCGTTGCAAGAGCCGGAGATTGTGCAGATTGAGGCCATGGCTTTTAGTTACAAGGAAGCTAAGGGAAGTGAGAATGATGATTATGAATGTGTGATTTGCTTGAACCAATTTAAAGGAGGAGAAAAGTGTCGATTGATGAAAAAATGTGGCCATATATTTCACCGGAGCTGCATCGACCGGTGGCTCATGGCGGAGCGACAATGCCCACTTTGCCGGAGCTGTGTTTGCATCGTCGTGAAACCATAA ATGTCATCGCTGCCGTTTGTTGCCACTCCACCGGCGACACCGCCCAATTTTGAACTGACTTCGACGGATAAAAAAAGAAATAATGACTCGGAATCCACCAGTGCGGTGGCCGGACCAATGCCGGCGTTGCAAGAGCCGGAGATTGTGCAGATTGAGGCCATGGCTTTTAGTTACAAGGAAGCTAAGGGAAGTGAGAATGATGATTATGAATGTGTGATTTGCTTGAACCAATTTAAAGGAGGAGAAAAGTGTCGATTGATGAAAAAATGTGGCCATATATTTCACCGGAGCTGCATCGACCGGTGGCTCATGGCGGAGCGACAATGCCCACTTTGCCGGAGCTGTGTTTGCATCGTCGTGAAACCATAA ATGTCATCGCTGCCGTTTGTTGCCACTCCACCGGCGACACCGCCCAATTTTGAACTGACTTCGACGGATAAAAAAAGAAATAATGACTCGGAATCCACCAGTGCGGTGGCCGGACCAATGCCGGCGTTGCAAGAGCCGGAGATTGTGCAGATTGAGGCCATGGCTTTTAGTTACAAGGAAGCTAAGGGAAGTGAGAATGATGATTATGAATGTGTGATTTGCTTGAACCAATTTAAAGGAGGAGAAAAGTGTCGATTGATGAAAAAATGTGGCCATATATTTCACCGGAGCTGCATCGACCGGTGGCTCATGGCGGAGCGACAATGCCCACTTTGCCGGAGCTGTGTTTGCATCGTCGTGAAACCATAA MSSLPFVATPPATPPNFELTSTDKKRNNDSESTSAVAGPMPALQEPEIVQIEAMAFSYKEAKGSENDDYECVICLNQFKGGEKCRLMKKCGHIFHRSCIDRWLMAERQCPLCRSCVCIVVKP Homology
BLAST of HG10021925 vs. NCBI nr
Match: KAE8653246.1 (hypothetical protein Csa_019623 [Cucumis sativus]) HSP 1 Score: 145.2 bits (365), Expect = 3.7e-31 Identity = 73/110 (66.36%), Postives = 84/110 (76.36%), Query Frame = 0
BLAST of HG10021925 vs. NCBI nr
Match: XP_004151032.1 (RING-H2 finger protein ATL66 [Cucumis sativus]) HSP 1 Score: 142.5 bits (358), Expect = 2.4e-30 Identity = 78/147 (53.06%), Postives = 90/147 (61.22%), Query Frame = 0
BLAST of HG10021925 vs. NCBI nr
Match: XP_008457571.1 (PREDICTED: RING-H2 finger protein ATL66-like [Cucumis melo] >TYJ97408.1 RING-H2 finger protein ATL66-like [Cucumis melo var. makuwa]) HSP 1 Score: 141.7 bits (356), Expect = 4.1e-30 Identity = 71/113 (62.83%), Postives = 82/113 (72.57%), Query Frame = 0
BLAST of HG10021925 vs. NCBI nr
Match: KAA0067735.1 (RING-H2 finger protein ATL66-like [Cucumis melo var. makuwa]) HSP 1 Score: 141.4 bits (355), Expect = 5.3e-30 Identity = 71/114 (62.28%), Postives = 82/114 (71.93%), Query Frame = 0
BLAST of HG10021925 vs. NCBI nr
Match: XP_022998666.1 (RING-H2 finger protein ATL56-like [Cucurbita maxima]) HSP 1 Score: 132.5 bits (332), Expect = 2.5e-27 Identity = 59/95 (62.11%), Postives = 73/95 (76.84%), Query Frame = 0
BLAST of HG10021925 vs. ExPASy Swiss-Prot
Match: Q9LX93 (E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana OX=3702 GN=ATL55 PE=1 SV=1) HSP 1 Score: 72.8 bits (177), Expect = 3.0e-12 Identity = 27/56 (48.21%), Postives = 39/56 (69.64%), Query Frame = 0
BLAST of HG10021925 vs. ExPASy Swiss-Prot
Match: Q940Q4 (RING-H2 finger protein ATL13 OS=Arabidopsis thaliana OX=3702 GN=ATL13 PE=2 SV=2) HSP 1 Score: 72.4 bits (176), Expect = 4.0e-12 Identity = 37/104 (35.58%), Postives = 59/104 (56.73%), Query Frame = 0
BLAST of HG10021925 vs. ExPASy Swiss-Prot
Match: Q9LUZ9 (RING-H2 finger protein ATL63 OS=Arabidopsis thaliana OX=3702 GN=ATL63 PE=2 SV=1) HSP 1 Score: 68.9 bits (167), Expect = 4.4e-11 Identity = 30/65 (46.15%), Postives = 41/65 (63.08%), Query Frame = 0
BLAST of HG10021925 vs. ExPASy Swiss-Prot
Match: Q8GW38 (RING-H2 finger protein ATL47 OS=Arabidopsis thaliana OX=3702 GN=ATL47 PE=2 SV=1) HSP 1 Score: 68.6 bits (166), Expect = 5.7e-11 Identity = 27/58 (46.55%), Postives = 38/58 (65.52%), Query Frame = 0
BLAST of HG10021925 vs. ExPASy Swiss-Prot
Match: P0C034 (RING-H2 finger protein ATL10 OS=Arabidopsis thaliana OX=3702 GN=ATL10 PE=2 SV=1) HSP 1 Score: 68.2 bits (165), Expect = 7.5e-11 Identity = 29/60 (48.33%), Postives = 35/60 (58.33%), Query Frame = 0
BLAST of HG10021925 vs. ExPASy TrEMBL
Match: A0A0A0LXE1 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G515480 PE=4 SV=1) HSP 1 Score: 142.5 bits (358), Expect = 1.2e-30 Identity = 78/147 (53.06%), Postives = 90/147 (61.22%), Query Frame = 0
BLAST of HG10021925 vs. ExPASy TrEMBL
Match: A0A5D3BGV5 (RING-H2 finger protein ATL66-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G002280 PE=4 SV=1) HSP 1 Score: 141.7 bits (356), Expect = 2.0e-30 Identity = 71/113 (62.83%), Postives = 82/113 (72.57%), Query Frame = 0
BLAST of HG10021925 vs. ExPASy TrEMBL
Match: A0A1S3C6H7 (RING-H2 finger protein ATL66-like OS=Cucumis melo OX=3656 GN=LOC103497236 PE=4 SV=1) HSP 1 Score: 141.7 bits (356), Expect = 2.0e-30 Identity = 71/113 (62.83%), Postives = 82/113 (72.57%), Query Frame = 0
BLAST of HG10021925 vs. ExPASy TrEMBL
Match: A0A5A7VPW6 (RING-H2 finger protein ATL66-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold352G00550 PE=4 SV=1) HSP 1 Score: 141.4 bits (355), Expect = 2.6e-30 Identity = 71/114 (62.28%), Postives = 82/114 (71.93%), Query Frame = 0
BLAST of HG10021925 vs. ExPASy TrEMBL
Match: A0A6J1KAT3 (RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111493250 PE=3 SV=1) HSP 1 Score: 132.5 bits (332), Expect = 1.2e-27 Identity = 59/95 (62.11%), Postives = 73/95 (76.84%), Query Frame = 0
BLAST of HG10021925 vs. TAIR 10
Match: AT5G10380.1 (RING/U-box superfamily protein ) HSP 1 Score: 72.8 bits (177), Expect = 2.2e-13 Identity = 27/56 (48.21%), Postives = 39/56 (69.64%), Query Frame = 0
BLAST of HG10021925 vs. TAIR 10
Match: AT4G30400.1 (RING/U-box superfamily protein ) HSP 1 Score: 72.4 bits (176), Expect = 2.8e-13 Identity = 37/104 (35.58%), Postives = 59/104 (56.73%), Query Frame = 0
BLAST of HG10021925 vs. TAIR 10
Match: AT5G58580.1 (TOXICOS EN LEVADURA 63 ) HSP 1 Score: 68.9 bits (167), Expect = 3.1e-12 Identity = 30/65 (46.15%), Postives = 41/65 (63.08%), Query Frame = 0
BLAST of HG10021925 vs. TAIR 10
Match: AT1G23980.1 (RING/U-box superfamily protein ) HSP 1 Score: 68.6 bits (166), Expect = 4.1e-12 Identity = 27/58 (46.55%), Postives = 38/58 (65.52%), Query Frame = 0
BLAST of HG10021925 vs. TAIR 10
Match: AT1G49220.1 (RING/U-box superfamily protein ) HSP 1 Score: 68.2 bits (165), Expect = 5.3e-12 Identity = 29/60 (48.33%), Postives = 35/60 (58.33%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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