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HG10021921 (gene) Bottle gourd (Hangzhou Gourd) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCTTCCCCATCTCCTCCGCCGGTGCCGGAATCCACAAGACGGCCAAATCGGCCGCCGCTGATCCATCCCGGTACGTTTCACCTTACGAGCAAATTAACAATCGCAAGCGGGTTGATGTTGGTGGCAGTGATTTGTGCTCTAATGATTTCGTTTATGTTCATTTTTCATTATTATTACCATCAGCGACTCAGAGTAGTCCAGGAAGACACCGAATCAAGCCAAATACCGGGAGCTGTGGCGGAGGAGACGGCGGAGGAAATTCCGGCGGCCGCGGAGATGGGTTTCAGAGAAATTAAAACAGAGGAAATTGGGGATTGTGATGGGAGGAGGTGTGCGATATGCATTGAGGGATTTGGAGAAGAAGAGATTTGTGGAGTAATTGAGAATTGCGGCCATTTTTTTCATAAGGATTGTATTAATCGGTGGCTTAGAATTGAGATGCGTTGCCCACTTTGCCGCTGCTTTGTTCATAGGTTTTTGTGA ATGTCTTCCCCATCTCCTCCGCCGGTGCCGGAATCCACAAGACGGCCAAATCGGCCGCCGCTGATCCATCCCGGTACGTTTCACCTTACGAGCAAATTAACAATCGCAAGCGGGTTGATGTTGGTGGCAGTGATTTGTGCTCTAATGATTTCGTTTATGTTCATTTTTCATTATTATTACCATCAGCGACTCAGAGTAGTCCAGGAAGACACCGAATCAAGCCAAATACCGGGAGCTGTGGCGGAGGAGACGGCGGAGGAAATTCCGGCGGCCGCGGAGATGGGTTTCAGAGAAATTAAAACAGAGGAAATTGGGGATTGTGATGGGAGGAGGTGTGCGATATGCATTGAGGGATTTGGAGAAGAAGAGATTTGTGGAGTAATTGAGAATTGCGGCCATTTTTTTCATAAGGATTGTATTAATCGGTGGCTTAGAATTGAGATGCGTTGCCCACTTTGCCGCTGCTTTGTTCATAGGTTTTTGTGA ATGTCTTCCCCATCTCCTCCGCCGGTGCCGGAATCCACAAGACGGCCAAATCGGCCGCCGCTGATCCATCCCGGTACGTTTCACCTTACGAGCAAATTAACAATCGCAAGCGGGTTGATGTTGGTGGCAGTGATTTGTGCTCTAATGATTTCGTTTATGTTCATTTTTCATTATTATTACCATCAGCGACTCAGAGTAGTCCAGGAAGACACCGAATCAAGCCAAATACCGGGAGCTGTGGCGGAGGAGACGGCGGAGGAAATTCCGGCGGCCGCGGAGATGGGTTTCAGAGAAATTAAAACAGAGGAAATTGGGGATTGTGATGGGAGGAGGTGTGCGATATGCATTGAGGGATTTGGAGAAGAAGAGATTTGTGGAGTAATTGAGAATTGCGGCCATTTTTTTCATAAGGATTGTATTAATCGGTGGCTTAGAATTGAGATGCGTTGCCCACTTTGCCGCTGCTTTGTTCATAGGTTTTTGTGA MSSPSPPPVPESTRRPNRPPLIHPGTFHLTSKLTIASGLMLVAVICALMISFMFIFHYYYHQRLRVVQEDTESSQIPGAVAEETAEEIPAAAEMGFREIKTEEIGDCDGRRCAICIEGFGEEEICGVIENCGHFFHKDCINRWLRIEMRCPLCRCFVHRFL Homology
BLAST of HG10021921 vs. NCBI nr
Match: XP_031742489.1 (RING-H2 finger protein ATL1-like [Cucumis sativus] >KAE8653253.1 hypothetical protein Csa_019970 [Cucumis sativus]) HSP 1 Score: 264.2 bits (674), Expect = 7.2e-67 Identity = 131/158 (82.91%), Postives = 139/158 (87.97%), Query Frame = 0
BLAST of HG10021921 vs. NCBI nr
Match: XP_022158253.1 (RING-H2 finger protein ATL14-like [Momordica charantia]) HSP 1 Score: 160.6 bits (405), Expect = 1.1e-35 Identity = 92/155 (59.35%), Postives = 106/155 (68.39%), Query Frame = 0
BLAST of HG10021921 vs. NCBI nr
Match: XP_022964751.1 (RING-H2 finger protein ATL64-like [Cucurbita moschata]) HSP 1 Score: 96.3 bits (238), Expect = 2.6e-16 Identity = 46/77 (59.74%), Postives = 55/77 (71.43%), Query Frame = 0
BLAST of HG10021921 vs. NCBI nr
Match: KAA0067736.1 (RING-H2 finger protein ATL52-like [Cucumis melo var. makuwa]) HSP 1 Score: 96.3 bits (238), Expect = 2.6e-16 Identity = 55/147 (37.41%), Postives = 78/147 (53.06%), Query Frame = 0
BLAST of HG10021921 vs. NCBI nr
Match: TYJ97407.1 (RING-H2 finger protein ATL52-like [Cucumis melo var. makuwa]) HSP 1 Score: 96.3 bits (238), Expect = 2.6e-16 Identity = 55/147 (37.41%), Postives = 78/147 (53.06%), Query Frame = 0
BLAST of HG10021921 vs. ExPASy Swiss-Prot
Match: Q8AWW4 (E3 ubiquitin-protein ligase RNF128 OS=Xenopus laevis OX=8355 GN=rnf128 PE=2 SV=2) HSP 1 Score: 59.7 bits (143), Expect = 3.5e-08 Identity = 28/78 (35.90%), Postives = 45/78 (57.69%), Query Frame = 0
BLAST of HG10021921 vs. ExPASy Swiss-Prot
Match: P0C041 (Putative RING-H2 finger protein ATL53 OS=Arabidopsis thaliana OX=3702 GN=ATL53 PE=3 SV=2) HSP 1 Score: 59.3 bits (142), Expect = 4.6e-08 Identity = 25/63 (39.68%), Postives = 38/63 (60.32%), Query Frame = 0
BLAST of HG10021921 vs. ExPASy Swiss-Prot
Match: Q8LGA5 (E3 ubiquitin-protein ligase ATL31 OS=Arabidopsis thaliana OX=3702 GN=ATL31 PE=1 SV=2) HSP 1 Score: 56.6 bits (135), Expect = 3.0e-07 Identity = 43/153 (28.10%), Postives = 67/153 (43.79%), Query Frame = 0
BLAST of HG10021921 vs. ExPASy Swiss-Prot
Match: Q06003 (Protein goliath OS=Drosophila melanogaster OX=7227 GN=gol PE=2 SV=3) HSP 1 Score: 56.2 bits (134), Expect = 3.9e-07 Identity = 40/130 (30.77%), Postives = 61/130 (46.92%), Query Frame = 0
BLAST of HG10021921 vs. ExPASy Swiss-Prot
Match: Q9LZJ6 (RING-H2 finger protein ATL5 OS=Arabidopsis thaliana OX=3702 GN=ATL5 PE=2 SV=1) HSP 1 Score: 54.7 bits (130), Expect = 1.1e-06 Identity = 39/146 (26.71%), Postives = 64/146 (43.84%), Query Frame = 0
BLAST of HG10021921 vs. ExPASy TrEMBL
Match: A0A6J1DVK4 (RING-H2 finger protein ATL14-like OS=Momordica charantia OX=3673 GN=LOC111024788 PE=4 SV=1) HSP 1 Score: 160.6 bits (405), Expect = 5.4e-36 Identity = 92/155 (59.35%), Postives = 106/155 (68.39%), Query Frame = 0
BLAST of HG10021921 vs. ExPASy TrEMBL
Match: A0A5D3BE50 (RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G002270 PE=3 SV=1) HSP 1 Score: 96.3 bits (238), Expect = 1.3e-16 Identity = 55/147 (37.41%), Postives = 78/147 (53.06%), Query Frame = 0
BLAST of HG10021921 vs. ExPASy TrEMBL
Match: A0A5A7VMH1 (RING-H2 finger protein ATL52-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold352G00560 PE=4 SV=1) HSP 1 Score: 96.3 bits (238), Expect = 1.3e-16 Identity = 55/147 (37.41%), Postives = 78/147 (53.06%), Query Frame = 0
BLAST of HG10021921 vs. ExPASy TrEMBL
Match: A0A6J1HJU0 (RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111464742 PE=3 SV=1) HSP 1 Score: 96.3 bits (238), Expect = 1.3e-16 Identity = 46/77 (59.74%), Postives = 55/77 (71.43%), Query Frame = 0
BLAST of HG10021921 vs. ExPASy TrEMBL
Match: A0A6J1DYV0 (E3 ubiquitin-protein ligase RING1-like OS=Momordica charantia OX=3673 GN=LOC111024783 PE=4 SV=1) HSP 1 Score: 95.5 bits (236), Expect = 2.1e-16 Identity = 71/175 (40.57%), Postives = 91/175 (52.00%), Query Frame = 0
BLAST of HG10021921 vs. TAIR 10
Match: AT2G37150.1 (RING/U-box superfamily protein ) HSP 1 Score: 59.7 bits (143), Expect = 2.5e-09 Identity = 25/63 (39.68%), Postives = 39/63 (61.90%), Query Frame = 0
BLAST of HG10021921 vs. TAIR 10
Match: AT2G37150.2 (RING/U-box superfamily protein ) HSP 1 Score: 59.7 bits (143), Expect = 2.5e-09 Identity = 25/63 (39.68%), Postives = 39/63 (61.90%), Query Frame = 0
BLAST of HG10021921 vs. TAIR 10
Match: AT2G37150.3 (RING/U-box superfamily protein ) HSP 1 Score: 59.7 bits (143), Expect = 2.5e-09 Identity = 25/63 (39.68%), Postives = 39/63 (61.90%), Query Frame = 0
BLAST of HG10021921 vs. TAIR 10
Match: AT4G17905.1 (RING/U-box superfamily protein ) HSP 1 Score: 59.3 bits (142), Expect = 3.3e-09 Identity = 25/63 (39.68%), Postives = 38/63 (60.32%), Query Frame = 0
BLAST of HG10021921 vs. TAIR 10
Match: AT5G43420.1 (RING/U-box superfamily protein ) HSP 1 Score: 58.2 bits (139), Expect = 7.3e-09 Identity = 23/53 (43.40%), Postives = 32/53 (60.38%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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