HG10021853 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10021853
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Unknown protein
Location	Chr05: 17573806 .. 17573994 (+)
RNA-Seq Expression	HG10021853
Synteny	HG10021853

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTGACCATTGGAAACTCAATGTTGATGCGATGTGGTCATATAAGGAGGTCAGAGGAGGGTTTGGTTGGATTGTTTGTGATCATGAAGGTCATGCGCTTTTGAGTGGCTGCAAATTCACTAGAGGAAGGAGAATTAATCTGTCGGAAGCTGAGGCCATCGTAGAGGGTCTGAAGGCAATCAAGTAG

mRNA sequence

ATGATTGACCATTGGAAACTCAATGTTGATGCGATGTGGTCATATAAGGAGGTCAGAGGAGGGTTTGGTTGGATTGTTTGTGATCATGAAGGTCATGCGCTTTTGAGTGGCTGCAAATTCACTAGAGGAAGGAGAATTAATCTGTCGGAAGCTGAGGCCATCGTAGAGGGTCTGAAGGCAATCAAGTAG

Coding sequence (CDS)

ATGATTGACCATTGGAAACTCAATGTTGATGCGATGTGGTCATATAAGGAGGTCAGAGGAGGGTTTGGTTGGATTGTTTGTGATCATGAAGGTCATGCGCTTTTGAGTGGCTGCAAATTCACTAGAGGAAGGAGAATTAATCTGTCGGAAGCTGAGGCCATCGTAGAGGGTCTGAAGGCAATCAAGTAG

Protein sequence

MIDHWKLNVDAMWSYKEVRGGFGWIVCDHEGHALLSGCKFTRGRRINLSEAEAIVEGLKAIK

Homology

[Close]

BLAST of HG10021853 vs. NCBI nr
Match: XP_022143317.1 (uncharacterized protein LOC111013216 [Momordica charantia])

HSP 1 Score: 59.7 bits (143), Expect = 1.0e-05
Identity = 27/58 (46.55%), Postives = 34/58 (58.62%), Query Frame = 0


Query: 5   WKLNVDAMWSYKEVRGGFGWIVCDHEGHALLSG-CKFTRGRRINLSEAEAIVEGLKAI 62
           WKLN DA WS +   GG GWI+CD  G  +L+G CK    + IN  E   I+ GL+ I
Sbjct: 113 WKLNTDASWSEEREVGGIGWILCDCRGEIVLAGNCKIREKKEINALELMTIIRGLQFI 170

[Close]

BLAST of HG10021853 vs. NCBI nr
Match: XP_022154990.1 (uncharacterized protein LOC111022134 isoform X1 [Momordica charantia])

HSP 1 Score: 55.5 bits (132), Expect = 2.0e-04
Identity = 26/59 (44.07%), Postives = 33/59 (55.93%), Query Frame = 0


Query: 5   WKLNVDAMWSYKEVRGGFGWIVCDHEGHALLSGCKFTRG-RRINLSEAEAIVEGLKAIK 63
           WKLN DA W       G GWI+ D +G  + +GC+  R  R I   E  AI EGL+AI+
Sbjct: 263 WKLNTDAAWRADTNTDGIGWILRDEKGEVIKTGCRIIRAERNITYLEVMAICEGLRAIR 321

[Close]

BLAST of HG10021853 vs. NCBI nr
Match: XP_022154991.1 (uncharacterized protein LOC111022134 isoform X2 [Momordica charantia])

HSP 1 Score: 55.5 bits (132), Expect = 2.0e-04
Identity = 26/59 (44.07%), Postives = 33/59 (55.93%), Query Frame = 0


Query: 5   WKLNVDAMWSYKEVRGGFGWIVCDHEGHALLSGCKFTRG-RRINLSEAEAIVEGLKAIK 63
           WKLN DA W       G GWI+ D +G  + +GC+  R  R I   E  AI EGL+AI+
Sbjct: 228 WKLNTDAAWRADTNTDGIGWILRDEKGEVIKTGCRIIRAERNITYLEVMAICEGLRAIR 286

[Close]

BLAST of HG10021853 vs. ExPASy TrEMBL
Match: A0A6J1CQG0 (uncharacterized protein LOC111013216 OS=Momordica charantia OX=3673 GN=LOC111013216 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 5.0e-06
Identity = 27/58 (46.55%), Postives = 34/58 (58.62%), Query Frame = 0


Query: 5   WKLNVDAMWSYKEVRGGFGWIVCDHEGHALLSG-CKFTRGRRINLSEAEAIVEGLKAI 62
           WKLN DA WS +   GG GWI+CD  G  +L+G CK    + IN  E   I+ GL+ I
Sbjct: 113 WKLNTDASWSEEREVGGIGWILCDCRGEIVLAGNCKIREKKEINALELMTIIRGLQFI 170

[Close]

BLAST of HG10021853 vs. ExPASy TrEMBL
Match: A0A6J1DL64 (uncharacterized protein LOC111022134 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111022134 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 9.5e-05
Identity = 26/59 (44.07%), Postives = 33/59 (55.93%), Query Frame = 0


Query: 5   WKLNVDAMWSYKEVRGGFGWIVCDHEGHALLSGCKFTRG-RRINLSEAEAIVEGLKAIK 63
           WKLN DA W       G GWI+ D +G  + +GC+  R  R I   E  AI EGL+AI+
Sbjct: 263 WKLNTDAAWRADTNTDGIGWILRDEKGEVIKTGCRIIRAERNITYLEVMAICEGLRAIR 321

[Close]

BLAST of HG10021853 vs. ExPASy TrEMBL
Match: A0A6J1DQC9 (uncharacterized protein LOC111022134 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111022134 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 9.5e-05
Identity = 26/59 (44.07%), Postives = 33/59 (55.93%), Query Frame = 0


Query: 5   WKLNVDAMWSYKEVRGGFGWIVCDHEGHALLSGCKFTRG-RRINLSEAEAIVEGLKAIK 63
           WKLN DA W       G GWI+ D +G  + +GC+  R  R I   E  AI EGL+AI+
Sbjct: 228 WKLNTDAAWRADTNTDGIGWILRDEKGEVIKTGCRIIRAERNITYLEVMAICEGLRAIR 286

The following BLAST results are available for this feature:

BLAST of HG10021853 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022143317.1	1.0e-05	46.55	uncharacterized protein LOC111013216 [Momordica charantia]	[more]
XP_022154990.1	2.0e-04	44.07	uncharacterized protein LOC111022134 isoform X1 [Momordica charantia]	[more]
XP_022154991.1	2.0e-04	44.07	uncharacterized protein LOC111022134 isoform X2 [Momordica charantia]	[more]

BLAST of HG10021853 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10021853 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CQG0	5.0e-06	46.55	uncharacterized protein LOC111013216 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A6J1DL64	9.5e-05	44.07	uncharacterized protein LOC111022134 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1DQC9	9.5e-05	44.07	uncharacterized protein LOC111022134 isoform X2 OS=Momordica charantia OX=3673 G...	[more]

BLAST of HG10021853 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 8..61 e-value: 2.6E-9 score: 36.9
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 3..62 e-value: 1.3E-5 score: 27.3

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10021853.1	HG10021853.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity