HG10021823 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10021823
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Protein PSY3
Location	Chr05: 17183813 .. 17184192 (+)
RNA-Seq Expression	HG10021823
Synteny	HG10021823

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTAAATACATGGACTTCTTCACTTCACATCTTCATTACCAATCTTTCAAACAAAGGCAAAGGAACAATAACAAGGATTGTTTCAAAGCTCGCCTCACTCTCTTCCTCTTGCTCTCGTTTGCCCTTGTTGCCTCAGCTCGGATCATGCTCCATTCAGGTACGCAAACCGCCACCTTTTGTGTAGGCTCATATTTTGAATCTAGTATAGAAAAATAAAATCTAATATCATGTCAGATAAGCAAGACATGACGATTGCGATAAGTGACTATGTTGATCCGGGACCTAATCCAAGACATGATTCAAACCAGCCGCCGCCGCCACCGTCATCACGGTTCAAAGTTAACGTTGTCGATGGCCCCGACAGCACAAATCCCTAA

mRNA sequence

ATGTGTAAATACATGGACTTCTTCACTTCACATCTTCATTACCAATCTTTCAAACAAAGGCAAAGGAACAATAACAAGGATTGTTTCAAAGCTCGCCTCACTCTCTTCCTCTTGCTCTCGTTTGCCCTTGTTGCCTCAGCTCGGATCATGCTCCATTCAGATAAGCAAGACATGACGATTGCGATAAGTGACTATGTTGATCCGGGACCTAATCCAAGACATGATTCAAACCAGCCGCCGCCGCCACCGTCATCACGGTTCAAAGTTAACGTTGTCGATGGCCCCGACAGCACAAATCCCTAA

Coding sequence (CDS)

ATGTGTAAATACATGGACTTCTTCACTTCACATCTTCATTACCAATCTTTCAAACAAAGGCAAAGGAACAATAACAAGGATTGTTTCAAAGCTCGCCTCACTCTCTTCCTCTTGCTCTCGTTTGCCCTTGTTGCCTCAGCTCGGATCATGCTCCATTCAGATAAGCAAGACATGACGATTGCGATAAGTGACTATGTTGATCCGGGACCTAATCCAAGACATGATTCAAACCAGCCGCCGCCGCCACCGTCATCACGGTTCAAAGTTAACGTTGTCGATGGCCCCGACAGCACAAATCCCTAA

Protein sequence

MCKYMDFFTSHLHYQSFKQRQRNNNKDCFKARLTLFLLLSFALVASARIMLHSDKQDMTIAISDYVDPGPNPRHDSNQPPPPPSSRFKVNVVDGPDSTNP

Homology

[Close]

BLAST of HG10021823 vs. NCBI nr
Match: KAA0031836.1 (Protein PSY3 [Cucumis melo var. makuwa])

HSP 1 Score: 77.8 bits (190), Expect = 5.9e-11
Identity = 42/68 (61.76%), Postives = 49/68 (72.06%), Query Frame = 0


Query: 27 DCFKARLTLFLLLSFALVASARIMLHSDKQDMTIAISDYVDPGPNPRHDSNQPPPPPSSR 86
          D  KARL LFLLLSF LV SARI+ HS+ Q+    I+DY DPG NPRHD   P PPPS +
Sbjct: 2  DYSKARLALFLLLSFVLVTSARIIPHSENQEAAYMINDYPDPGANPRHD---PFPPPSQQ 61

Query: 87 FKVNVVDG 95
          F+V+VV G
Sbjct: 62 FEVSVVKG 66

[Close]

BLAST of HG10021823 vs. NCBI nr
Match: XP_038895781.1 (circumsporozoite protein-like [Benincasa hispida])

HSP 1 Score: 76.3 bits (186), Expect = 1.7e-10
Identity = 37/52 (71.15%), Postives = 41/52 (78.85%), Query Frame = 0


Query: 29 FKARLTLFLLLSFALVASARIMLHSDKQDMTIAISDYVDPGPNPRHDSNQPP 81
          FKARLT FLLLSFAL+  ARI  HS+ Q+ TI I+DY DPG NPRHD NQPP
Sbjct: 4  FKARLTFFLLLSFALITLARITPHSESQNNTITINDYADPGANPRHDPNQPP 55

[Close]

BLAST of HG10021823 vs. NCBI nr
Match: KAA0031838.1 (hypothetical protein E6C27_scaffold848G00880 [Cucumis melo var. makuwa])

HSP 1 Score: 72.8 bits (177), Expect = 1.9e-09
Identity = 42/69 (60.87%), Postives = 49/69 (71.01%), Query Frame = 0


Query: 29 FKARL-TLFLLLSFALVASARIMLHSDKQDMTIAISDYVDPGPNPRHDSNQPPPPPSSRF 88
          FKARL  LFLLLSFALV SARIM HS+ Q+    I+DY DPG NPRHD   P PPP  +F
Sbjct: 4  FKARLIALFLLLSFALVTSARIMPHSENQEAAYMINDYPDPGANPRHD---PFPPPPQQF 63

Query: 89 KVNVVDGPD 97
          +++VV   D
Sbjct: 64 EISVVKDHD 69

[Close]

BLAST of HG10021823 vs. NCBI nr
Match: KGN65816.1 (hypothetical protein Csa_023196 [Cucumis sativus])

HSP 1 Score: 71.2 bits (173), Expect = 5.5e-09
Identity = 43/75 (57.33%), Postives = 49/75 (65.33%), Query Frame = 0


Query: 27  DCFKARLTLFLLLSFALVASARIMLHSDKQDMTIAISDYVDPGPNPRHDSNQPPPPPSSR 86
           D  KARL LFLLLSFAL  SARI+ HS+ Q+ T  ++DY DPG NPRHD    PPP    
Sbjct: 2   DYSKARLALFLLLSFALATSARIIPHSENQEATYIMNDYSDPGANPRHDPF--PPPLEHS 61

Query: 87  FKVNVVDGPDST-NP 101
           F+VN V G   T NP
Sbjct: 62  FEVNAVRGRHITKNP 74

[Close]

BLAST of HG10021823 vs. NCBI nr
Match: KAA0031837.1 (hypothetical protein E6C27_scaffold848G00870 [Cucumis melo var. makuwa] >TYJ97300.1 hypothetical protein E5676_scaffold194G00970 [Cucumis melo var. makuwa])

HSP 1 Score: 69.7 bits (169), Expect = 1.6e-08
Identity = 37/66 (56.06%), Postives = 46/66 (69.70%), Query Frame = 0


Query: 27 DCFKARLTLFLLLSFALVASARIMLHSDKQDMTIAISDYVDPGPNPRHDSNQPPPPPSSR 86
          D  K RL L LLLSFA+V  ARI+ HS+ Q++   I+DY DPG NPRHD   P PPP  +
Sbjct: 2  DYSKTRLALLLLLSFAIVTFARIIPHSENQEVAYTINDYPDPGANPRHD---PFPPPPQQ 61

Query: 87 FKVNVV 93
          F+V+VV
Sbjct: 62 FEVSVV 64

[Close]

BLAST of HG10021823 vs. ExPASy TrEMBL
Match: A0A5A7SPC6 (Protein PSY3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold848G00860 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.9e-11
Identity = 42/68 (61.76%), Postives = 49/68 (72.06%), Query Frame = 0


Query: 27 DCFKARLTLFLLLSFALVASARIMLHSDKQDMTIAISDYVDPGPNPRHDSNQPPPPPSSR 86
          D  KARL LFLLLSF LV SARI+ HS+ Q+    I+DY DPG NPRHD   P PPPS +
Sbjct: 2  DYSKARLALFLLLSFVLVTSARIIPHSENQEAAYMINDYPDPGANPRHD---PFPPPSQQ 61

Query: 87 FKVNVVDG 95
          F+V+VV G
Sbjct: 62 FEVSVVKG 66

[Close]

BLAST of HG10021823 vs. ExPASy TrEMBL
Match: A0A5A7SMH7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold848G00880 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 9.2e-10
Identity = 42/69 (60.87%), Postives = 49/69 (71.01%), Query Frame = 0


Query: 29 FKARL-TLFLLLSFALVASARIMLHSDKQDMTIAISDYVDPGPNPRHDSNQPPPPPSSRF 88
          FKARL  LFLLLSFALV SARIM HS+ Q+    I+DY DPG NPRHD   P PPP  +F
Sbjct: 4  FKARLIALFLLLSFALVTSARIMPHSENQEAAYMINDYPDPGANPRHD---PFPPPPQQF 63

Query: 89 KVNVVDGPD 97
          +++VV   D
Sbjct: 64 EISVVKDHD 69

[Close]

BLAST of HG10021823 vs. ExPASy TrEMBL
Match: A0A0A0LV67 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532230 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 9.2e-10
Identity = 42/75 (56.00%), Postives = 52/75 (69.33%), Query Frame = 0


Query: 27  DCFKARLTLFLLLSFALVASARIMLHSDKQDMTIAISDYVDPGPNPRHDSNQPPPPPSSR 86
           D  KARL+L LLLSF LV SARI+ HS+ Q++   I+DY DPG NPRH  N  PPPP   
Sbjct: 2   DYSKARLSLLLLLSFVLVTSARIIPHSENQEVAYMINDYPDPGANPRH--NPFPPPPRHL 61

Query: 87  FKVNVV-DGPDSTNP 101
           F+++VV DG  + NP
Sbjct: 62  FEISVVKDGDITKNP 74

[Close]

BLAST of HG10021823 vs. ExPASy TrEMBL
Match: A0A0A0M0T8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532240 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.7e-09
Identity = 43/75 (57.33%), Postives = 49/75 (65.33%), Query Frame = 0


Query: 27  DCFKARLTLFLLLSFALVASARIMLHSDKQDMTIAISDYVDPGPNPRHDSNQPPPPPSSR 86
           D  KARL LFLLLSFAL  SARI+ HS+ Q+ T  ++DY DPG NPRHD    PPP    
Sbjct: 2   DYSKARLALFLLLSFALATSARIIPHSENQEATYIMNDYSDPGANPRHDPF--PPPLEHS 61

Query: 87  FKVNVVDGPDST-NP 101
           F+VN V G   T NP
Sbjct: 62  FEVNAVRGRHITKNP 74

[Close]

BLAST of HG10021823 vs. ExPASy TrEMBL
Match: A0A5D3BBU7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G00970 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 7.8e-09
Identity = 37/66 (56.06%), Postives = 46/66 (69.70%), Query Frame = 0


Query: 27 DCFKARLTLFLLLSFALVASARIMLHSDKQDMTIAISDYVDPGPNPRHDSNQPPPPPSSR 86
          D  K RL L LLLSFA+V  ARI+ HS+ Q++   I+DY DPG NPRHD   P PPP  +
Sbjct: 2  DYSKTRLALLLLLSFAIVTFARIIPHSENQEVAYTINDYPDPGANPRHD---PFPPPPQQ 61

Query: 87 FKVNVV 93
          F+V+VV
Sbjct: 62 FEVSVV 64

The following BLAST results are available for this feature:

BLAST of HG10021823 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0031836.1	5.9e-11	61.76	Protein PSY3 [Cucumis melo var. makuwa]	[more]
XP_038895781.1	1.7e-10	71.15	circumsporozoite protein-like [Benincasa hispida]	[more]
KAA0031838.1	1.9e-09	60.87	hypothetical protein E6C27_scaffold848G00880 [Cucumis melo var. makuwa]	[more]
KGN65816.1	5.5e-09	57.33	hypothetical protein Csa_023196 [Cucumis sativus]	[more]
KAA0031837.1	1.6e-08	56.06	hypothetical protein E6C27_scaffold848G00870 [Cucumis melo var. makuwa] >TYJ9730...	[more]

BLAST of HG10021823 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10021823 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SPC6	2.9e-11	61.76	Protein PSY3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold848G00860 P...	[more]
A0A5A7SMH7	9.2e-10	60.87	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A0A0LV67	9.2e-10	56.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532230 PE=4 SV=1	[more]
A0A0A0M0T8	2.7e-09	57.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532240 PE=4 SV=1	[more]
A0A5D3BBU7	7.8e-09	56.06	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of HG10021823 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 62..100

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10021823.1	HG10021823.1	mRNA