HG10021823 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10021823
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionProtein PSY3
LocationChr05: 17183813 .. 17184192 (+)
RNA-Seq ExpressionHG10021823
SyntenyHG10021823
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTAAATACATGGACTTCTTCACTTCACATCTTCATTACCAATCTTTCAAACAAAGGCAAAGGAACAATAACAAGGATTGTTTCAAAGCTCGCCTCACTCTCTTCCTCTTGCTCTCGTTTGCCCTTGTTGCCTCAGCTCGGATCATGCTCCATTCAGGTACGCAAACCGCCACCTTTTGTGTAGGCTCATATTTTGAATCTAGTATAGAAAAATAAAATCTAATATCATGTCAGATAAGCAAGACATGACGATTGCGATAAGTGACTATGTTGATCCGGGACCTAATCCAAGACATGATTCAAACCAGCCGCCGCCGCCACCGTCATCACGGTTCAAAGTTAACGTTGTCGATGGCCCCGACAGCACAAATCCCTAA

mRNA sequence

ATGTGTAAATACATGGACTTCTTCACTTCACATCTTCATTACCAATCTTTCAAACAAAGGCAAAGGAACAATAACAAGGATTGTTTCAAAGCTCGCCTCACTCTCTTCCTCTTGCTCTCGTTTGCCCTTGTTGCCTCAGCTCGGATCATGCTCCATTCAGATAAGCAAGACATGACGATTGCGATAAGTGACTATGTTGATCCGGGACCTAATCCAAGACATGATTCAAACCAGCCGCCGCCGCCACCGTCATCACGGTTCAAAGTTAACGTTGTCGATGGCCCCGACAGCACAAATCCCTAA

Coding sequence (CDS)

ATGTGTAAATACATGGACTTCTTCACTTCACATCTTCATTACCAATCTTTCAAACAAAGGCAAAGGAACAATAACAAGGATTGTTTCAAAGCTCGCCTCACTCTCTTCCTCTTGCTCTCGTTTGCCCTTGTTGCCTCAGCTCGGATCATGCTCCATTCAGATAAGCAAGACATGACGATTGCGATAAGTGACTATGTTGATCCGGGACCTAATCCAAGACATGATTCAAACCAGCCGCCGCCGCCACCGTCATCACGGTTCAAAGTTAACGTTGTCGATGGCCCCGACAGCACAAATCCCTAA

Protein sequence

MCKYMDFFTSHLHYQSFKQRQRNNNKDCFKARLTLFLLLSFALVASARIMLHSDKQDMTIAISDYVDPGPNPRHDSNQPPPPPSSRFKVNVVDGPDSTNP
Homology
BLAST of HG10021823 vs. NCBI nr
Match: KAA0031836.1 (Protein PSY3 [Cucumis melo var. makuwa])

HSP 1 Score: 77.8 bits (190), Expect = 5.9e-11
Identity = 42/68 (61.76%), Postives = 49/68 (72.06%), Query Frame = 0

Query: 27 DCFKARLTLFLLLSFALVASARIMLHSDKQDMTIAISDYVDPGPNPRHDSNQPPPPPSSR 86
          D  KARL LFLLLSF LV SARI+ HS+ Q+    I+DY DPG NPRHD   P PPPS +
Sbjct: 2  DYSKARLALFLLLSFVLVTSARIIPHSENQEAAYMINDYPDPGANPRHD---PFPPPSQQ 61

Query: 87 FKVNVVDG 95
          F+V+VV G
Sbjct: 62 FEVSVVKG 66

BLAST of HG10021823 vs. NCBI nr
Match: XP_038895781.1 (circumsporozoite protein-like [Benincasa hispida])

HSP 1 Score: 76.3 bits (186), Expect = 1.7e-10
Identity = 37/52 (71.15%), Postives = 41/52 (78.85%), Query Frame = 0

Query: 29 FKARLTLFLLLSFALVASARIMLHSDKQDMTIAISDYVDPGPNPRHDSNQPP 81
          FKARLT FLLLSFAL+  ARI  HS+ Q+ TI I+DY DPG NPRHD NQPP
Sbjct: 4  FKARLTFFLLLSFALITLARITPHSESQNNTITINDYADPGANPRHDPNQPP 55

BLAST of HG10021823 vs. NCBI nr
Match: KAA0031838.1 (hypothetical protein E6C27_scaffold848G00880 [Cucumis melo var. makuwa])

HSP 1 Score: 72.8 bits (177), Expect = 1.9e-09
Identity = 42/69 (60.87%), Postives = 49/69 (71.01%), Query Frame = 0

Query: 29 FKARL-TLFLLLSFALVASARIMLHSDKQDMTIAISDYVDPGPNPRHDSNQPPPPPSSRF 88
          FKARL  LFLLLSFALV SARIM HS+ Q+    I+DY DPG NPRHD   P PPP  +F
Sbjct: 4  FKARLIALFLLLSFALVTSARIMPHSENQEAAYMINDYPDPGANPRHD---PFPPPPQQF 63

Query: 89 KVNVVDGPD 97
          +++VV   D
Sbjct: 64 EISVVKDHD 69

BLAST of HG10021823 vs. NCBI nr
Match: KGN65816.1 (hypothetical protein Csa_023196 [Cucumis sativus])

HSP 1 Score: 71.2 bits (173), Expect = 5.5e-09
Identity = 43/75 (57.33%), Postives = 49/75 (65.33%), Query Frame = 0

Query: 27  DCFKARLTLFLLLSFALVASARIMLHSDKQDMTIAISDYVDPGPNPRHDSNQPPPPPSSR 86
           D  KARL LFLLLSFAL  SARI+ HS+ Q+ T  ++DY DPG NPRHD    PPP    
Sbjct: 2   DYSKARLALFLLLSFALATSARIIPHSENQEATYIMNDYSDPGANPRHDPF--PPPLEHS 61

Query: 87  FKVNVVDGPDST-NP 101
           F+VN V G   T NP
Sbjct: 62  FEVNAVRGRHITKNP 74

BLAST of HG10021823 vs. NCBI nr
Match: KAA0031837.1 (hypothetical protein E6C27_scaffold848G00870 [Cucumis melo var. makuwa] >TYJ97300.1 hypothetical protein E5676_scaffold194G00970 [Cucumis melo var. makuwa])

HSP 1 Score: 69.7 bits (169), Expect = 1.6e-08
Identity = 37/66 (56.06%), Postives = 46/66 (69.70%), Query Frame = 0

Query: 27 DCFKARLTLFLLLSFALVASARIMLHSDKQDMTIAISDYVDPGPNPRHDSNQPPPPPSSR 86
          D  K RL L LLLSFA+V  ARI+ HS+ Q++   I+DY DPG NPRHD   P PPP  +
Sbjct: 2  DYSKTRLALLLLLSFAIVTFARIIPHSENQEVAYTINDYPDPGANPRHD---PFPPPPQQ 61

Query: 87 FKVNVV 93
          F+V+VV
Sbjct: 62 FEVSVV 64

BLAST of HG10021823 vs. ExPASy TrEMBL
Match: A0A5A7SPC6 (Protein PSY3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold848G00860 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.9e-11
Identity = 42/68 (61.76%), Postives = 49/68 (72.06%), Query Frame = 0

Query: 27 DCFKARLTLFLLLSFALVASARIMLHSDKQDMTIAISDYVDPGPNPRHDSNQPPPPPSSR 86
          D  KARL LFLLLSF LV SARI+ HS+ Q+    I+DY DPG NPRHD   P PPPS +
Sbjct: 2  DYSKARLALFLLLSFVLVTSARIIPHSENQEAAYMINDYPDPGANPRHD---PFPPPSQQ 61

Query: 87 FKVNVVDG 95
          F+V+VV G
Sbjct: 62 FEVSVVKG 66

BLAST of HG10021823 vs. ExPASy TrEMBL
Match: A0A5A7SMH7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold848G00880 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 9.2e-10
Identity = 42/69 (60.87%), Postives = 49/69 (71.01%), Query Frame = 0

Query: 29 FKARL-TLFLLLSFALVASARIMLHSDKQDMTIAISDYVDPGPNPRHDSNQPPPPPSSRF 88
          FKARL  LFLLLSFALV SARIM HS+ Q+    I+DY DPG NPRHD   P PPP  +F
Sbjct: 4  FKARLIALFLLLSFALVTSARIMPHSENQEAAYMINDYPDPGANPRHD---PFPPPPQQF 63

Query: 89 KVNVVDGPD 97
          +++VV   D
Sbjct: 64 EISVVKDHD 69

BLAST of HG10021823 vs. ExPASy TrEMBL
Match: A0A0A0LV67 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532230 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 9.2e-10
Identity = 42/75 (56.00%), Postives = 52/75 (69.33%), Query Frame = 0

Query: 27  DCFKARLTLFLLLSFALVASARIMLHSDKQDMTIAISDYVDPGPNPRHDSNQPPPPPSSR 86
           D  KARL+L LLLSF LV SARI+ HS+ Q++   I+DY DPG NPRH  N  PPPP   
Sbjct: 2   DYSKARLSLLLLLSFVLVTSARIIPHSENQEVAYMINDYPDPGANPRH--NPFPPPPRHL 61

Query: 87  FKVNVV-DGPDSTNP 101
           F+++VV DG  + NP
Sbjct: 62  FEISVVKDGDITKNP 74

BLAST of HG10021823 vs. ExPASy TrEMBL
Match: A0A0A0M0T8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532240 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.7e-09
Identity = 43/75 (57.33%), Postives = 49/75 (65.33%), Query Frame = 0

Query: 27  DCFKARLTLFLLLSFALVASARIMLHSDKQDMTIAISDYVDPGPNPRHDSNQPPPPPSSR 86
           D  KARL LFLLLSFAL  SARI+ HS+ Q+ T  ++DY DPG NPRHD    PPP    
Sbjct: 2   DYSKARLALFLLLSFALATSARIIPHSENQEATYIMNDYSDPGANPRHDPF--PPPLEHS 61

Query: 87  FKVNVVDGPDST-NP 101
           F+VN V G   T NP
Sbjct: 62  FEVNAVRGRHITKNP 74

BLAST of HG10021823 vs. ExPASy TrEMBL
Match: A0A5D3BBU7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G00970 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 7.8e-09
Identity = 37/66 (56.06%), Postives = 46/66 (69.70%), Query Frame = 0

Query: 27 DCFKARLTLFLLLSFALVASARIMLHSDKQDMTIAISDYVDPGPNPRHDSNQPPPPPSSR 86
          D  K RL L LLLSFA+V  ARI+ HS+ Q++   I+DY DPG NPRHD   P PPP  +
Sbjct: 2  DYSKTRLALLLLLSFAIVTFARIIPHSENQEVAYTINDYPDPGANPRHD---PFPPPPQQ 61

Query: 87 FKVNVV 93
          F+V+VV
Sbjct: 62 FEVSVV 64

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0031836.15.9e-1161.76Protein PSY3 [Cucumis melo var. makuwa][more]
XP_038895781.11.7e-1071.15circumsporozoite protein-like [Benincasa hispida][more]
KAA0031838.11.9e-0960.87hypothetical protein E6C27_scaffold848G00880 [Cucumis melo var. makuwa][more]
KGN65816.15.5e-0957.33hypothetical protein Csa_023196 [Cucumis sativus][more]
KAA0031837.11.6e-0856.06hypothetical protein E6C27_scaffold848G00870 [Cucumis melo var. makuwa] >TYJ9730... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7SPC62.9e-1161.76Protein PSY3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold848G00860 P... [more]
A0A5A7SMH79.2e-1060.87Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A0A0LV679.2e-1056.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532230 PE=4 SV=1[more]
A0A0A0M0T82.7e-0957.33Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532240 PE=4 SV=1[more]
A0A5D3BBU77.8e-0956.06Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 62..100

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10021823.1HG10021823.1mRNA