HG10021770 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10021770
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	protein DOUBLE-STRAND BREAK FORMATION
Location	Chr05: 16400431 .. 16400613 (-)
RNA-Seq Expression	HG10021770
Synteny	HG10021770

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGTTGATGGATGTCAAATCCAGCTTAAAAGAATTCCTCAGACTTGAATCTCCATCTATCATTCGTGAAACCGCCGAGAAAACTGATGATCAAAAGCTTCTAGTAATCGAATTTCTTGTTCGAGCTTTTGCCCTTGTTGGAGACATTGAGGCGAGTATTCATTTGCATAACTCTCTGTGA

mRNA sequence

ATGTCGTTGATGGATGTCAAATCCAGCTTAAAAGAATTCCTCAGACTTGAATCTCCATCTATCATTCGTGAAACCGCCGAGAAAACTGATGATCAAAAGCTTCTAGTAATCGAATTTCTTGTTCGAGCTTTTGCCCTTGTTGGAGACATTGAGGCGAGTATTCATTTGCATAACTCTCTGTGA

Coding sequence (CDS)

ATGTCGTTGATGGATGTCAAATCCAGCTTAAAAGAATTCCTCAGACTTGAATCTCCATCTATCATTCGTGAAACCGCCGAGAAAACTGATGATCAAAAGCTTCTAGTAATCGAATTTCTTGTTCGAGCTTTTGCCCTTGTTGGAGACATTGAGGCGAGTATTCATTTGCATAACTCTCTGTGA

Protein sequence

MSLMDVKSSLKEFLRLESPSIIRETAEKTDDQKLLVIEFLVRAFALVGDIEASIHLHNSL

Homology

[Close]

BLAST of HG10021770 vs. NCBI nr
Match: XP_038895344.1 (protein DOUBLE-STRAND BREAK FORMATION isoform X1 [Benincasa hispida])

HSP 1 Score: 89.7 bits (221), Expect = 9.0e-15
Identity = 49/56 (87.50%), Postives = 51/56 (91.07%), Query Frame = 0


Query: 1  MSLMDVKSSLKEFLRLESPSIIRETAEKTDDQKLLVIEFLVRAFALVGDIEASIHL 57
          MSLMDVKS LKEFLR ES SIIRETAEKTDDQKLLVIEFLVRAFALVGDIE+ + L
Sbjct: 39 MSLMDVKSDLKEFLRFESLSIIRETAEKTDDQKLLVIEFLVRAFALVGDIESCLAL 94

[Close]

BLAST of HG10021770 vs. NCBI nr
Match: XP_038895347.1 (protein DOUBLE-STRAND BREAK FORMATION isoform X2 [Benincasa hispida])

HSP 1 Score: 89.7 bits (221), Expect = 9.0e-15
Identity = 49/56 (87.50%), Postives = 51/56 (91.07%), Query Frame = 0


Query: 1  MSLMDVKSSLKEFLRLESPSIIRETAEKTDDQKLLVIEFLVRAFALVGDIEASIHL 57
          MSLMDVKS LKEFLR ES SIIRETAEKTDDQKLLVIEFLVRAFALVGDIE+ + L
Sbjct: 39 MSLMDVKSDLKEFLRFESLSIIRETAEKTDDQKLLVIEFLVRAFALVGDIESCLAL 94

[Close]

BLAST of HG10021770 vs. NCBI nr
Match: KAG6583341.1 (Protein DOUBLE-STRAND BREAK FORMATION, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 85.9 bits (211), Expect = 1.3e-13
Identity = 46/53 (86.79%), Postives = 48/53 (90.57%), Query Frame = 0


Query: 1  MSLMDVKSSLKEFLRLESPSIIRETAEKTDDQKLLVIEFLVRAFALVGDIEAS 54
          MSLMDVKS +KE LR ES SIIRET EKTDDQKLLVIEFLVRAFALVGDIEA+
Sbjct: 39 MSLMDVKSGVKELLRFESLSIIRETVEKTDDQKLLVIEFLVRAFALVGDIEAN 91

[Close]

BLAST of HG10021770 vs. NCBI nr
Match: KAG7019109.1 (hypothetical protein SDJN02_18067, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 85.9 bits (211), Expect = 1.3e-13
Identity = 46/54 (85.19%), Postives = 49/54 (90.74%), Query Frame = 0


Query: 1  MSLMDVKSSLKEFLRLESPSIIRETAEKTDDQKLLVIEFLVRAFALVGDIEASI 55
          MSLMDVKS +KE LR ES SIIRET EKTDDQKLLVIEFLVRAFALVGDIEA++
Sbjct: 39 MSLMDVKSGVKELLRFESLSIIRETVEKTDDQKLLVIEFLVRAFALVGDIEATL 92

[Close]

BLAST of HG10021770 vs. NCBI nr
Match: XP_023520164.1 (uncharacterized protein LOC111783465 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 83.6 bits (205), Expect = 6.5e-13
Identity = 45/56 (80.36%), Postives = 49/56 (87.50%), Query Frame = 0


Query: 1  MSLMDVKSSLKEFLRLESPSIIRETAEKTDDQKLLVIEFLVRAFALVGDIEASIHL 57
          MSLMDVKS +KE LR ES SIIRET +KTDDQKLLVIEFLVRAFALVGDIE+ + L
Sbjct: 39 MSLMDVKSGVKELLRFESLSIIRETVDKTDDQKLLVIEFLVRAFALVGDIESCLAL 94

[Close]

BLAST of HG10021770 vs. ExPASy Swiss-Prot
Match: Q8RX33 (Protein DOUBLE-STRAND BREAK FORMATION OS=Arabidopsis thaliana OX=3702 GN=DFO PE=1 SV=1)

HSP 1 Score: 44.3 bits (103), Expect = 5.7e-04
Identity = 23/53 (43.40%), Postives = 36/53 (67.92%), Query Frame = 0


Query: 2   SLMDVKSSLKEFLRLESPSIIRETAEKTDDQKLLVIEFLVRAFALVGDIEASI 55
           S ++V+S L++F+R ES  I  E   ++   KL V+EF  RAFAL+GD+E+ +
Sbjct: 67  SFLEVRSRLRDFMRSESVVIFGELTGESMVAKLSVLEFFARAFALLGDMESCL 119

[Close]

BLAST of HG10021770 vs. ExPASy TrEMBL
Match: A0A6J1HPP0 (uncharacterized protein LOC111464906 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111464906 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 7.0e-13
Identity = 45/56 (80.36%), Postives = 48/56 (85.71%), Query Frame = 0


Query: 1  MSLMDVKSSLKEFLRLESPSIIRETAEKTDDQKLLVIEFLVRAFALVGDIEASIHL 57
          MSLMDVKS +KE L  ES SIIRET EKTDDQKLLVIEFLVRAFALVGDIE+ + L
Sbjct: 39 MSLMDVKSGVKELLSFESLSIIRETVEKTDDQKLLVIEFLVRAFALVGDIESCLAL 94

[Close]

BLAST of HG10021770 vs. ExPASy TrEMBL
Match: A0A6J1HMC3 (uncharacterized protein LOC111464906 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111464906 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 7.0e-13
Identity = 45/56 (80.36%), Postives = 48/56 (85.71%), Query Frame = 0


Query: 1  MSLMDVKSSLKEFLRLESPSIIRETAEKTDDQKLLVIEFLVRAFALVGDIEASIHL 57
          MSLMDVKS +KE L  ES SIIRET EKTDDQKLLVIEFLVRAFALVGDIE+ + L
Sbjct: 39 MSLMDVKSGVKELLSFESLSIIRETVEKTDDQKLLVIEFLVRAFALVGDIESCLAL 94

[Close]

BLAST of HG10021770 vs. ExPASy TrEMBL
Match: A0A1S3CL50 (uncharacterized protein LOC103502216 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103502216 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 9.1e-13
Identity = 45/51 (88.24%), Postives = 45/51 (88.24%), Query Frame = 0


Query: 2  SLMDVKSSLKEFLRLESPSIIRETAEKTDDQKLLVIEFLVRAFALVGDIEA 53
          SL DVKSS  E LR ES SIIRETAEKTDDQKLLVIEFLVRAFALVGDIEA
Sbjct: 36 SLADVKSSFSELLRFESLSIIRETAEKTDDQKLLVIEFLVRAFALVGDIEA 86

[Close]

BLAST of HG10021770 vs. ExPASy TrEMBL
Match: A0A1S3CL48 (uncharacterized protein LOC103502216 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502216 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.2e-12
Identity = 45/55 (81.82%), Postives = 47/55 (85.45%), Query Frame = 0


Query: 2  SLMDVKSSLKEFLRLESPSIIRETAEKTDDQKLLVIEFLVRAFALVGDIEASIHL 57
          SL DVKSS  E LR ES SIIRETAEKTDDQKLLVIEFLVRAFALVGDIE+ + L
Sbjct: 36 SLADVKSSFSELLRFESLSIIRETAEKTDDQKLLVIEFLVRAFALVGDIESCLAL 90

[Close]

BLAST of HG10021770 vs. ExPASy TrEMBL
Match: A0A5A7TKX6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold795G00650 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.2e-12
Identity = 45/55 (81.82%), Postives = 47/55 (85.45%), Query Frame = 0


Query: 2   SLMDVKSSLKEFLRLESPSIIRETAEKTDDQKLLVIEFLVRAFALVGDIEASIHL 57
           SL DVKSS  E LR ES SIIRETAEKTDDQKLLVIEFLVRAFALVGDIE+ + L
Sbjct: 49  SLADVKSSFSELLRFESLSIIRETAEKTDDQKLLVIEFLVRAFALVGDIESCLAL 103

[Close]

BLAST of HG10021770 vs. TAIR 10
Match: AT1G07060.1 (unknown protein; Has 30 Blast hits to 30 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 44.3 bits (103), Expect = 4.1e-05
Identity = 23/53 (43.40%), Postives = 36/53 (67.92%), Query Frame = 0


Query: 2   SLMDVKSSLKEFLRLESPSIIRETAEKTDDQKLLVIEFLVRAFALVGDIEASI 55
           S ++V+S L++F+R ES  I  E   ++   KL V+EF  RAFAL+GD+E+ +
Sbjct: 67  SFLEVRSRLRDFMRSESVVIFGELTGESMVAKLSVLEFFARAFALLGDMESCL 119

The following BLAST results are available for this feature:

BLAST of HG10021770 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038895344.1	9.0e-15	87.50	protein DOUBLE-STRAND BREAK FORMATION isoform X1 [Benincasa hispida]	[more]
XP_038895347.1	9.0e-15	87.50	protein DOUBLE-STRAND BREAK FORMATION isoform X2 [Benincasa hispida]	[more]
KAG6583341.1	1.3e-13	86.79	Protein DOUBLE-STRAND BREAK FORMATION, partial [Cucurbita argyrosperma subsp. so...	[more]
KAG7019109.1	1.3e-13	85.19	hypothetical protein SDJN02_18067, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_023520164.1	6.5e-13	80.36	uncharacterized protein LOC111783465 isoform X1 [Cucurbita pepo subsp. pepo]	[more]

BLAST of HG10021770 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8RX33	5.7e-04	43.40	Protein DOUBLE-STRAND BREAK FORMATION OS=Arabidopsis thaliana OX=3702 GN=DFO PE=...	[more]

BLAST of HG10021770 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HPP0	7.0e-13	80.36	uncharacterized protein LOC111464906 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1HMC3	7.0e-13	80.36	uncharacterized protein LOC111464906 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A1S3CL50	9.1e-13	88.24	uncharacterized protein LOC103502216 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S3CL48	1.2e-12	81.82	uncharacterized protein LOC103502216 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A5A7TKX6	1.2e-12	81.82	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of HG10021770 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G07060.1	4.1e-05	43.40	unknown protein; Has 30 Blast hits to 30 proteins in 10 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR044969	Protein DOUBLE-STRAND BREAK FORMATION	PANTHER	PTHR37176	F10K1.23	coord: 2..55

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10021770.1	HG10021770.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042138	meiotic DNA double-strand break formation