HG10021738 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10021738
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	DUF4283 domain-containing protein
Location	Chr05: 15614719 .. 15614880 (+)
RNA-Seq Expression	HG10021738
Synteny	HG10021738

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTAATTGCACGCTGGTTTGTATTCAAGTCTCTTGTAGTTTATGTGGTTTCATGCCAGCAATAACTGAAATCCAAAATGACATCAGAGGAAATATTTTTCTTCATTTTGGCGATATTGAAATTTTGGATCCTCCTAATGTAGTTCATGATGATTCATGA

mRNA sequence

ATGACTAATTGCACGCTGGTTTGTATTCAAGTCTCTTGTAGTTTATGTGGTTTCATGCCAGCAATAACTGAAATCCAAAATGACATCAGAGGAAATATTTTTCTTCATTTTGGCGATATTGAAATTTTGGATCCTCCTAATGTAGTTCATGATGATTCATGA

Coding sequence (CDS)

ATGACTAATTGCACGCTGGTTTGTATTCAAGTCTCTTGTAGTTTATGTGGTTTCATGCCAGCAATAACTGAAATCCAAAATGACATCAGAGGAAATATTTTTCTTCATTTTGGCGATATTGAAATTTTGGATCCTCCTAATGTAGTTCATGATGATTCATGA

Protein sequence

MTNCTLVCIQVSCSLCGFMPAITEIQNDIRGNIFLHFGDIEILDPPNVVHDDS

Homology

[Close]

BLAST of HG10021738 vs. NCBI nr
Match: KAA0063414.1 (uncharacterized protein E6C27_scaffold508G00510 [Cucumis melo var. makuwa] >TYK11672.1 uncharacterized protein E5676_scaffold828G00460 [Cucumis melo var. makuwa])

HSP 1 Score: 57.4 bits (137), Expect = 4.4e-05
Identity = 24/51 (47.06%), Postives = 39/51 (76.47%), Query Frame = 0


Query: 1   MTNCTLVCIQVSCSLCGFMPAITEIQNDIRGNIFLHFGDIEILDPPNVVHD 52
           + NC+   I+VS +LCGF+PA+ E+++  R NIFL+FGDI++L+ P V+ +
Sbjct: 153 LINCSEAKIKVSQNLCGFLPAMVELRDAFRDNIFLNFGDIKVLEAPKVIEE 203

[Close]

BLAST of HG10021738 vs. NCBI nr
Match: XP_031738083.1 (uncharacterized protein LOC116402658 [Cucumis sativus])

HSP 1 Score: 55.1 bits (131), Expect = 2.2e-04
Identity = 25/46 (54.35%), Postives = 32/46 (69.57%), Query Frame = 0


Query: 1  MTNCTLVCIQVSCSLCGFMPAITEIQNDIRGNIFLHFGDIEILDPP 47
          +TNC+   IQV  +LCGF+ +  EI +  RGNIFLHFG+ E L PP
Sbjct: 54 LTNCSEARIQVKRNLCGFVLSTNEISDHKRGNIFLHFGEFEFLSPP 99

[Close]

BLAST of HG10021738 vs. NCBI nr
Match: KAA0062494.1 (uncharacterized protein E6C27_scaffold130G00900 [Cucumis melo var. makuwa] >TYK27390.1 uncharacterized protein E5676_scaffold325G00720 [Cucumis melo var. makuwa])

HSP 1 Score: 53.1 bits (126), Expect = 8.3e-04
Identity = 25/46 (54.35%), Postives = 33/46 (71.74%), Query Frame = 0


Query: 1   MTNCTLVCIQVSCSLCGFMPAITEIQNDIRGNIFLHFGDIEILDPP 47
           +TNC+   IQV  +LCGF+ +  EI +  RGNI+LHFGD E L+PP
Sbjct: 87  LTNCSDARIQVDKNLCGFVLSTFEITDLKRGNIYLHFGDFEFLNPP 132

[Close]

BLAST of HG10021738 vs. ExPASy TrEMBL
Match: A0A5A7V878 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold828G00460 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.1e-05
Identity = 24/51 (47.06%), Postives = 39/51 (76.47%), Query Frame = 0


Query: 1   MTNCTLVCIQVSCSLCGFMPAITEIQNDIRGNIFLHFGDIEILDPPNVVHD 52
           + NC+   I+VS +LCGF+PA+ E+++  R NIFL+FGDI++L+ P V+ +
Sbjct: 153 LINCSEAKIKVSQNLCGFLPAMVELRDAFRDNIFLNFGDIKVLEAPKVIEE 203

[Close]

BLAST of HG10021738 vs. ExPASy TrEMBL
Match: A0A5D3DVS9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G00720 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 4.0e-04
Identity = 25/46 (54.35%), Postives = 33/46 (71.74%), Query Frame = 0


Query: 1   MTNCTLVCIQVSCSLCGFMPAITEIQNDIRGNIFLHFGDIEILDPP 47
           +TNC+   IQV  +LCGF+ +  EI +  RGNI+LHFGD E L+PP
Sbjct: 87  LTNCSDARIQVDKNLCGFVLSTFEITDLKRGNIYLHFGDFEFLNPP 132

[Close]

BLAST of HG10021738 vs. ExPASy TrEMBL
Match: A0A1S4E5E1 (uncharacterized protein LOC107992196 OS=Cucumis melo OX=3656 GN=LOC107992196 PE=4 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 8.9e-04
Identity = 23/49 (46.94%), Postives = 35/49 (71.43%), Query Frame = 0


Query: 1  MTNCTLVCIQVSCSLCGFMPAITEIQNDIRGNIFLHFGDIEILDPPNVV 50
          M N +   I+VS +LCGF+PA  E++++ +GNIF +FGD E L+ P V+
Sbjct: 1  MINYSKAKIKVSQNLCGFLPATVELRDENQGNIFFNFGDFEALEDPKVI 49

[Close]

BLAST of HG10021738 vs. ExPASy TrEMBL
Match: A0A5D3C5I3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G001220 PE=4 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 8.9e-04
Identity = 23/49 (46.94%), Postives = 35/49 (71.43%), Query Frame = 0


Query: 1  MTNCTLVCIQVSCSLCGFMPAITEIQNDIRGNIFLHFGDIEILDPPNVV 50
          M N +   I+VS +LCGF+PA  E++++ +GNIF +FGD E L+ P V+
Sbjct: 1  MINYSKAKIKVSQNLCGFLPATVELRDENQGNIFFNFGDFEALEDPKVI 49

The following BLAST results are available for this feature:

BLAST of HG10021738 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0063414.1	4.4e-05	47.06	uncharacterized protein E6C27_scaffold508G00510 [Cucumis melo var. makuwa] >TYK1...	[more]
XP_031738083.1	2.2e-04	54.35	uncharacterized protein LOC116402658 [Cucumis sativus]	[more]
KAA0062494.1	8.3e-04	54.35	uncharacterized protein E6C27_scaffold130G00900 [Cucumis melo var. makuwa] >TYK2...	[more]

BLAST of HG10021738 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10021738 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V878	2.1e-05	47.06	DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3DVS9	4.0e-04	54.35	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S4E5E1	8.9e-04	46.94	uncharacterized protein LOC107992196 OS=Cucumis melo OX=3656 GN=LOC107992196 PE=...	[more]
A0A5D3C5I3	8.9e-04	46.94	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of HG10021738 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10021738.1	HG10021738.1	mRNA