HG10021716 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10021716
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Protein GL2-INTERACTING REPRESSOR 1
Location	Chr05: 14632286 .. 14632549 (+)
RNA-Seq Expression	HG10021716
Synteny	HG10021716

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCGAAGATTCAACAATCCAAAATCAGAACCAATATCACAAGATCTAACGTTGGCAGTATCTAACTCGACAACCGAAGACGCCACAACAACGACCATGGTGCTACTAGGGTGCACTCGATGCCTCATGTACGTCATGTCTTCTAAGTTAGATCTCAAATGTCCCAAATGTAACAACAATACATTGCTTGATGTATTCAATTTGGCAAATCAAGCATCTCGAAGAAATGTTGTCGATATCTCGCCTGACGTTGCTAAATGA

mRNA sequence

ATGGGTCGAAGATTCAACAATCCAAAATCAGAACCAATATCACAAGATCTAACGTTGGCAGTATCTAACTCGACAACCGAAGACGCCACAACAACGACCATGGTGCTACTAGGGTGCACTCGATGCCTCATGTACGTCATGTCTTCTAAGTTAGATCTCAAATGTCCCAAATGTAACAACAATACATTGCTTGATGTATTCAATTTGGCAAATCAAGCATCTCGAAGAAATGTTGTCGATATCTCGCCTGACGTTGCTAAATGA

Coding sequence (CDS)

ATGGGTCGAAGATTCAACAATCCAAAATCAGAACCAATATCACAAGATCTAACGTTGGCAGTATCTAACTCGACAACCGAAGACGCCACAACAACGACCATGGTGCTACTAGGGTGCACTCGATGCCTCATGTACGTCATGTCTTCTAAGTTAGATCTCAAATGTCCCAAATGTAACAACAATACATTGCTTGATGTATTCAATTTGGCAAATCAAGCATCTCGAAGAAATGTTGTCGATATCTCGCCTGACGTTGCTAAATGA

Protein sequence

MGRRFNNPKSEPISQDLTLAVSNSTTEDATTTTMVLLGCTRCLMYVMSSKLDLKCPKCNNNTLLDVFNLANQASRRNVVDISPDVAK

Homology

[Close]

BLAST of HG10021716 vs. NCBI nr
Match: KAG6583700.1 (hypothetical protein SDJN03_19632, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019351.1 hypothetical protein SDJN02_18311 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 107.5 bits (267), Expect = 6.1e-20
Identity = 53/66 (80.30%), Postives = 60/66 (90.91%), Query Frame = 0


Query: 22 SNSTTEDATTTTMVLLGCTRCLMYVMSSKLDLKCPKCNNNTLLDVFNLANQASRRNVVDI 81
          S+S TEDATT+ MVLLGCT+CLMYVMSSK DLKCPKCNN TLLDV NLANQAS++N+VD+
Sbjct: 18 SSSKTEDATTSVMVLLGCTQCLMYVMSSKFDLKCPKCNNTTLLDVHNLANQASKKNLVDM 77

Query: 82 SPDVAK 88
          S DVAK
Sbjct: 78 SIDVAK 83

[Close]

BLAST of HG10021716 vs. NCBI nr
Match: OIT01184.1 (hypothetical protein A4A49_22135 [Nicotiana attenuata])

HSP 1 Score: 60.8 bits (146), Expect = 6.5e-06
Identity = 33/73 (45.21%), Postives = 47/73 (64.38%), Query Frame = 0


Query: 7   NPKSEPISQDLTLAVSNSTTEDATTTTMVLLGCTRCLMYVMSSKL-DLKCPKCNNNTLLD 66
           +P S  +S D + AV   +    T T+MVL+GC RCLMYVM +++ D +CPKC +  LLD
Sbjct: 37  SPTSSCVSSDDSSAVQRYSDSPETITSMVLVGCPRCLMYVMLAEVNDPRCPKCKSTCLLD 96

Query: 67  VFNLANQASRRNV 79
           V    N+ +RRN+
Sbjct: 97  VMYEKNKTTRRNI 109

[Close]

BLAST of HG10021716 vs. NCBI nr
Match: KAE8735595.1 (hypothetical protein F3Y22_tig00000340pilonHSYRG00721 [Hibiscus syriacus])

HSP 1 Score: 60.5 bits (145), Expect = 8.5e-06
Identity = 33/68 (48.53%), Postives = 42/68 (61.76%), Query Frame = 0


Query: 10  SEPISQDLTLAVSNSTTEDATTTTMVLLGCTRCLMYVMSSKLDLKCPKCNNNTLLDVFNL 69
           SEP +Q  T+   +S  E    T+MVL+GC RCLMYVM S++D KCP+C +  LLD  N 
Sbjct: 47  SEPDNQTTTVEYPSSPEE----TSMVLVGCPRCLMYVMLSEVDPKCPRCKSTVLLDFLNE 106

Query: 70  ANQASRRN 78
            N    RN
Sbjct: 107 ENNKKTRN 110

[Close]

BLAST of HG10021716 vs. NCBI nr
Match: TYH76956.1 (hypothetical protein ES332_D04G121400v1 [Gossypium tomentosum])

HSP 1 Score: 60.1 bits (144), Expect = 1.1e-05
Identity = 32/62 (51.61%), Postives = 42/62 (67.74%), Query Frame = 0


Query: 7  NPKSEPISQDLTLAVSNSTTEDATTTTMVLLGCTRCLMYVMSSKLDLKCPKCNNNTLLDV 66
          +P S  +S ++     +S+  +ATTT+MVLLGC RCLMYVM S+ D KCPKC +  LLD 
Sbjct: 37 SPPSSCVSSEMEYDTGSSS--EATTTSMVLLGCPRCLMYVMLSEDDPKCPKCKSTVLLDF 96

Query: 67 FN 69
           N
Sbjct: 97 LN 96

[Close]

BLAST of HG10021716 vs. NCBI nr
Match: XP_039002217.1 (uncharacterized protein LOC120128632 [Hibiscus syriacus] >KAE8702514.1 hypothetical protein F3Y22_tig00110482pilonHSYRG00220 [Hibiscus syriacus])

HSP 1 Score: 60.1 bits (144), Expect = 1.1e-05
Identity = 30/53 (56.60%), Postives = 39/53 (73.58%), Query Frame = 0


Query: 16  DLTLAVSNSTTEDATTTTMVLLGCTRCLMYVMSSKLDLKCPKCNNNTLLDVFN 69
           D+T AV  +++ DAT+  MVL+GC RCL+YVM S+ D KCPKCN+  LLD  N
Sbjct: 49  DMTDAVGYASSPDATSFPMVLVGCPRCLIYVMLSEDDPKCPKCNSTVLLDFLN 101

[Close]

BLAST of HG10021716 vs. ExPASy Swiss-Prot
Match: Q9SRN4 (Protein GL2-INTERACTING REPRESSOR 2 OS=Arabidopsis thaliana OX=3702 GN=GIR2 PE=1 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 5.2e-06
Identity = 27/57 (47.37%), Postives = 35/57 (61.40%), Query Frame = 0


Query: 9  KSEPISQDLTLAVSNSTTEDATTTTMVLLGCTRCLMYVMSSKLDLKCPKCNNNTLLD 66
          +S   S    ++   +  E+ T T+MVL+GC RCLMYVM S  D KCPKC +  LLD
Sbjct: 35 RSNTTSPSSCVSSETNQEENETITSMVLVGCPRCLMYVMLSDDDPKCPKCKSTVLLD 91

[Close]

BLAST of HG10021716 vs. ExPASy Swiss-Prot
Match: Q9FNI1 (Protein GL2-INTERACTING REPRESSOR 1 OS=Arabidopsis thaliana OX=3702 GN=GIR1 PE=1 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 8.8e-06
Identity = 30/62 (48.39%), Postives = 41/62 (66.13%), Query Frame = 0


Query: 7  NPKSEPISQDLTL---AVSNSTTEDATTTTMVLLGCTRCLMYVMSSKLDLKCPKCNNNTL 66
          +P S  +S ++     +V  ST+ +  TT+MVL+GC RCLMYVM S+ D KCPKC +  L
Sbjct: 38 SPPSSCVSSEMNQDEPSVRYSTSPE--TTSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVL 97

[Close]

BLAST of HG10021716 vs. ExPASy TrEMBL
Match: A0A1J6IKY6 (Uncharacterized protein OS=Nicotiana attenuata OX=49451 GN=A4A49_22135 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 3.2e-06
Identity = 33/73 (45.21%), Postives = 47/73 (64.38%), Query Frame = 0


Query: 7   NPKSEPISQDLTLAVSNSTTEDATTTTMVLLGCTRCLMYVMSSKL-DLKCPKCNNNTLLD 66
           +P S  +S D + AV   +    T T+MVL+GC RCLMYVM +++ D +CPKC +  LLD
Sbjct: 37  SPTSSCVSSDDSSAVQRYSDSPETITSMVLVGCPRCLMYVMLAEVNDPRCPKCKSTCLLD 96

Query: 67  VFNLANQASRRNV 79
           V    N+ +RRN+
Sbjct: 97  VMYEKNKTTRRNI 109

[Close]

BLAST of HG10021716 vs. ExPASy TrEMBL
Match: A0A6A3D1E4 (Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00000340pilonHSYRG00721 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 4.1e-06
Identity = 33/68 (48.53%), Postives = 42/68 (61.76%), Query Frame = 0


Query: 10  SEPISQDLTLAVSNSTTEDATTTTMVLLGCTRCLMYVMSSKLDLKCPKCNNNTLLDVFNL 69
           SEP +Q  T+   +S  E    T+MVL+GC RCLMYVM S++D KCP+C +  LLD  N 
Sbjct: 47  SEPDNQTTTVEYPSSPEE----TSMVLVGCPRCLMYVMLSEVDPKCPRCKSTVLLDFLNE 106

Query: 70  ANQASRRN 78
            N    RN
Sbjct: 107 ENNKKTRN 110

[Close]

BLAST of HG10021716 vs. ExPASy TrEMBL
Match: A0A6A3AD94 (Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110482pilonHSYRG00220 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 5.4e-06
Identity = 30/53 (56.60%), Postives = 39/53 (73.58%), Query Frame = 0


Query: 16  DLTLAVSNSTTEDATTTTMVLLGCTRCLMYVMSSKLDLKCPKCNNNTLLDVFN 69
           D+T AV  +++ DAT+  MVL+GC RCL+YVM S+ D KCPKCN+  LLD  N
Sbjct: 49  DMTDAVGYASSPDATSFPMVLVGCPRCLIYVMLSEDDPKCPKCNSTVLLDFLN 101

[Close]

BLAST of HG10021716 vs. ExPASy TrEMBL
Match: A0A5D2LD87 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D04G121400v1 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 5.4e-06
Identity = 32/62 (51.61%), Postives = 42/62 (67.74%), Query Frame = 0


Query: 7  NPKSEPISQDLTLAVSNSTTEDATTTTMVLLGCTRCLMYVMSSKLDLKCPKCNNNTLLDV 66
          +P S  +S ++     +S+  +ATTT+MVLLGC RCLMYVM S+ D KCPKC +  LLD 
Sbjct: 37 SPPSSCVSSEMEYDTGSSS--EATTTSMVLLGCPRCLMYVMLSEDDPKCPKCKSTVLLDF 96

Query: 67 FN 69
           N
Sbjct: 97 LN 96

[Close]

BLAST of HG10021716 vs. ExPASy TrEMBL
Match: A0A2P5W242 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A09G102300v1 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.6e-05
Identity = 32/68 (47.06%), Postives = 41/68 (60.29%), Query Frame = 0


Query: 10  SEPISQDLTLAVSNSTTEDATTTTMVLLGCTRCLMYVMSSKLDLKCPKCNNNTLLDVFNL 69
           SEP +   T+   +S  E    T+MVL+GC RCLMYVM S++D KCP+C +  LLD  N 
Sbjct: 50  SEPDNSTTTMQYPSSPEE----TSMVLVGCPRCLMYVMLSEVDPKCPRCKSTVLLDFLNE 109

Query: 70  ANQASRRN 78
            N    RN
Sbjct: 110 ENTKKTRN 113

[Close]

BLAST of HG10021716 vs. TAIR 10
Match: AT3G11600.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06270.1); Has 171 Blast hits to 171 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 171; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 51.6 bits (122), Expect = 3.7e-07
Identity = 27/57 (47.37%), Postives = 35/57 (61.40%), Query Frame = 0


Query: 9  KSEPISQDLTLAVSNSTTEDATTTTMVLLGCTRCLMYVMSSKLDLKCPKCNNNTLLD 66
          +S   S    ++   +  E+ T T+MVL+GC RCLMYVM S  D KCPKC +  LLD
Sbjct: 35 RSNTTSPSSCVSSETNQEENETITSMVLVGCPRCLMYVMLSDDDPKCPKCKSTVLLD 91

[Close]

BLAST of HG10021716 vs. TAIR 10
Match: AT5G06270.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11600.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 50.8 bits (120), Expect = 6.3e-07
Identity = 30/62 (48.39%), Postives = 41/62 (66.13%), Query Frame = 0


Query: 7  NPKSEPISQDLTL---AVSNSTTEDATTTTMVLLGCTRCLMYVMSSKLDLKCPKCNNNTL 66
          +P S  +S ++     +V  ST+ +  TT+MVL+GC RCLMYVM S+ D KCPKC +  L
Sbjct: 38 SPPSSCVSSEMNQDEPSVRYSTSPE--TTSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVL 97

The following BLAST results are available for this feature:

BLAST of HG10021716 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6583700.1	6.1e-20	80.30	hypothetical protein SDJN03_19632, partial [Cucurbita argyrosperma subsp. sorori...	[more]
OIT01184.1	6.5e-06	45.21	hypothetical protein A4A49_22135 [Nicotiana attenuata]	[more]
KAE8735595.1	8.5e-06	48.53	hypothetical protein F3Y22_tig00000340pilonHSYRG00721 [Hibiscus syriacus]	[more]
TYH76956.1	1.1e-05	51.61	hypothetical protein ES332_D04G121400v1 [Gossypium tomentosum]	[more]
XP_039002217.1	1.1e-05	56.60	uncharacterized protein LOC120128632 [Hibiscus syriacus] >KAE8702514.1 hypotheti...	[more]

BLAST of HG10021716 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SRN4	5.2e-06	47.37	Protein GL2-INTERACTING REPRESSOR 2 OS=Arabidopsis thaliana OX=3702 GN=GIR2 PE=1...	[more]
Q9FNI1	8.8e-06	48.39	Protein GL2-INTERACTING REPRESSOR 1 OS=Arabidopsis thaliana OX=3702 GN=GIR1 PE=1...	[more]

BLAST of HG10021716 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1J6IKY6	3.2e-06	45.21	Uncharacterized protein OS=Nicotiana attenuata OX=49451 GN=A4A49_22135 PE=4 SV=1	[more]
A0A6A3D1E4	4.1e-06	48.53	Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00000340pilon...	[more]
A0A6A3AD94	5.4e-06	56.60	Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110482pilon...	[more]
A0A5D2LD87	5.4e-06	51.61	Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D04G121400v1 P...	[more]
A0A2P5W242	1.6e-05	47.06	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A09G102300v1 PE...	[more]

BLAST of HG10021716 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G11600.1	3.7e-07	47.37	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response...	[more]
AT5G06270.1	6.3e-07	48.39	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33177	PUTATIVE-RELATED	coord: 19..77
None	No IPR available	PANTHER	PTHR33177:SF51	GB\|AAF02129.1	coord: 19..77

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10021716.1	HG10021716.1	mRNA