HG10021660 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10021660
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr05: 13394939 .. 13395190 (+)
RNA-Seq ExpressionHG10021660
SyntenyHG10021660
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGAGGTTTTCATGTTCCTGACCTTGACACTAACTCTATGAGCTTTCAAGTTGATGGTCCCAGTCAGGCTTTGATTGAATCTGCTTTTGGTAGTCGGGTGCTGCAGTTATTGTTAAATGAGTCTCATGATCTTACTACCCGTCTGCAACAACTTCAAGATCAAAAGTCTCAAGTTGATGAGTTGTTATTAGTGATGAGGTCAATTCTATCTCGACCTGGTGGCAACTCTTCTTCTCAAAGAAGGGCTTGA

mRNA sequence

ATGCGAGGTTTTCATGTTCCTGACCTTGACACTAACTCTATGAGCTTTCAAGTTGATGGTCCCAGTCAGGCTTTGATTGAATCTGCTTTTGGTAGTCGGGTGCTGCAGTTATTGTTAAATGAGTCTCATGATCTTACTACCCGTCTGCAACAACTTCAAGATCAAAAGTCTCAAGTTGATGAGTTGTTATTAGTGATGAGGTCAATTCTATCTCGACCTGGTGGCAACTCTTCTTCTCAAAGAAGGGCTTGA

Coding sequence (CDS)

ATGCGAGGTTTTCATGTTCCTGACCTTGACACTAACTCTATGAGCTTTCAAGTTGATGGTCCCAGTCAGGCTTTGATTGAATCTGCTTTTGGTAGTCGGGTGCTGCAGTTATTGTTAAATGAGTCTCATGATCTTACTACCCGTCTGCAACAACTTCAAGATCAAAAGTCTCAAGTTGATGAGTTGTTATTAGTGATGAGGTCAATTCTATCTCGACCTGGTGGCAACTCTTCTTCTCAAAGAAGGGCTTGA

Protein sequence

MRGFHVPDLDTNSMSFQVDGPSQALIESAFGSRVLQLLLNESHDLTTRLQQLQDQKSQVDELLLVMRSILSRPGGNSSSQRRA
Homology
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BLAST of HG10021660 vs. NCBI nr
Match: XP_038904458.1 (uncharacterized protein LOC120090822 [Benincasa hispida])

HSP 1 Score: 69.3 bits (168), Expect = 1.7e-08
Identity = 37/83 (44.58%), Postives = 61/83 (73.49%), Query Frame = 0 

Query: 1   MRGFHVPDLDTNSMSFQVDGPSQALIESAFGSRVLQLLLNESHDLTTRLQQLQDQKSQVD 60
           ++G +V DL+T ++++ +DG SQ ++ S+F   +LQLL  ESHDL + + QLQ++K++VD
Sbjct: 200 LQGHYVLDLNTTTITYHLDGSSQ-IMASSFSGHILQLLSVESHDLESLVHQLQERKAEVD 259

Query: 61  ELLLVMRSILSRPGGNSSSQRRA 84
           ++LL+M  +LSR    SSSQ R+
Sbjct: 260 KVLLIMWFVLSRDVEASSSQPRS 281

The following BLAST results are available for this feature:
BLAST of HG10021660 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038904458.11.7e-0844.58uncharacterized protein LOC120090822 [Benincasa hispida][more]
BLAST of HG10021660 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10021660 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10021660 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 35..55

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10021660.1HG10021660.1mRNA