HG10021659 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10021659
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Gag-pol polyprotein
Location	Chr05: 13391628 .. 13392802 (+)
RNA-Seq Expression	HG10021659
Synteny	HG10021659

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGGTTGAAGAAGATGTTCCTTCATCCACTACAAACAAGTATGACGTCCGCGTGCGAGGTTTGCCTTCTATACAAACGGAAGTCAGGGTTCCTCCTAGGCAAAATGAAGAAGATTTGGAGTCAATCTCGTTTACGAAGCCAGGGATAAAAAATATGTGAGTCTTTCCAATCTCACTATAACTGATTTTCTAGGTCCTTGAGTATAAATTTTGCCTGAAAAGGAAAAATCAACTTCTACTGATTCGTTGAGTCTTTTGCATGAGTATATAGCATTGCCTAGAAACCCTAGTTCAAAGGTTGAATCTTCACCTGCTACTGAAGAAGTAACTAGAGATATTGAGAGTAAGAATGTCATTGATCAGTCTACTGCCTGTTTATTTGATAATATGGTGTTGAATATCTCTGAATTCAATGTGAAAAATGATGTTGTTGGCTCTGAGTCTTCTATGGAAGAAAATGTGGTTGTGCCTGTTTCTACTGTTGTTGAATCTGAAGAGGTTCTAGCGTCTAAAGAGAATGTGTTGCATGAATTTATTGATAAAATTGTATCTGAAACAATCGTTTCGTTGTCTATTCTGCCTAAATATTGTCTGTCTAATTCAAAAGAGAAAGTGACTTGTGTTGAGAACCCTAAAAATCTACAATCTGTTGAGGAGGGTGTTAATGCTCCTCTTGAGACAGCCACCATGGCTGATCTTGAAAGTGTATTTGAGAAGTTTGTCGATGAATTGCTAGTTACACAAAATGTTGAACCTGAAAAGGATGATGTCCTTGATGACGATCTTGATGAGATTACTCCTCTAGCTGAGATTCTCTCAAAGAAAAGCGAAGATGAAGATAAAAATGAAGCTCCTAATGAAAAAGTTGGAGCTGGTGATAAAACAAATACTGAAGCCTCTCATGAATCCCTCGAAACTGAGTCTCTAAAGTCCCTCTTTGAAGATGAATTTGACTGGGGTTTTCAAAGTATCTCAAAAACTCAAGAATCTTGTCTTCCACGAGCTACTCGTGCTTCAGCTAAAAATAAGGGAAAGCAAGCGGCAGGTTCTGGCATCCCATTTGTTCCCATTGATGGAGTGTCATTCCACACTGAAGACGGTGTGAAATTTTGGAATTTTGTGGTGAAAAGAAACATAATTGATGAAAAGGAACTTTTTGAACGTCTACAATAG

mRNA sequence

ATGATGGTTGAAGAAGATGTTCCTTCATCCACTACAAACAAGTATGACGTCCGCGTGCGAGGTTTGCCTTCTATACAAACGGAAGTCAGGGTTCCTCCTAGGCAAAATGAAGAAGATTTGGAGTCAATCTCGTTTACGAAGCCAGGGATAAAAAATATAAACCCTAGTTCAAAGGTTGAATCTTCACCTGCTACTGAAGAAGTAACTAGAGATATTGAGAGTAAGAATGTCATTGATCAGTCTACTGCCTGTTTATTTGATAATATGGTGTTGAATATCTCTGAATTCAATGTGAAAAATGATGTTGTTGGCTCTGAGTCTTCTATGGAAGAAAATGTGGTTGTGCCTGTTTCTACTGTTGTTGAATCTGAAGAGGTTCTAGCGTCTAAAGAGAATGTGTTGCATGAATTTATTGATAAAATTGTATCTGAAACAATCGTTTCGTTGTCTATTCTGCCTAAATATTGTCTGTCTAATTCAAAAGAGAAAGTGACTTGTGTTGAGAACCCTAAAAATCTACAATCTGTTGAGGAGGGTGTTAATGCTCCTCTTGAGACAGCCACCATGGCTGATCTTGAAAGTGTATTTGAGAAGTTTGTCGATGAATTGCTAGTTACACAAAATGTTGAACCTGAAAAGGATGATGTCCTTGATGACGATCTTGATGAGATTACTCCTCTAGCTGAGATTCTCTCAAAGAAAAGCGAAGATGAAGATAAAAATGAAGCTCCTAATGAAAAAGTTGGAGCTGGTGATAAAACAAATACTGAAGCCTCTCATGAATCCCTCGAAACTGAGTCTCTAAAGTCCCTCTTTGAAGATGAATTTGACTGGGGTTTTCAAAGTATCTCAAAAACTCAAGAATCTTGTCTTCCACGAGCTACTCGTGCTTCAGCTAAAAATAAGGGAAAGCAAGCGGCAGGTTCTGGCATCCCATTTGTTCCCATTGATGGAGTGTCATTCCACACTGAAGACGGTGTGAAATTTTGGAATTTTGTGGTGAAAAGAAACATAATTGATGAAAAGGAACTTTTTGAACGTCTACAATAG

Coding sequence (CDS)

ATGATGGTTGAAGAAGATGTTCCTTCATCCACTACAAACAAGTATGACGTCCGCGTGCGAGGTTTGCCTTCTATACAAACGGAAGTCAGGGTTCCTCCTAGGCAAAATGAAGAAGATTTGGAGTCAATCTCGTTTACGAAGCCAGGGATAAAAAATATAAACCCTAGTTCAAAGGTTGAATCTTCACCTGCTACTGAAGAAGTAACTAGAGATATTGAGAGTAAGAATGTCATTGATCAGTCTACTGCCTGTTTATTTGATAATATGGTGTTGAATATCTCTGAATTCAATGTGAAAAATGATGTTGTTGGCTCTGAGTCTTCTATGGAAGAAAATGTGGTTGTGCCTGTTTCTACTGTTGTTGAATCTGAAGAGGTTCTAGCGTCTAAAGAGAATGTGTTGCATGAATTTATTGATAAAATTGTATCTGAAACAATCGTTTCGTTGTCTATTCTGCCTAAATATTGTCTGTCTAATTCAAAAGAGAAAGTGACTTGTGTTGAGAACCCTAAAAATCTACAATCTGTTGAGGAGGGTGTTAATGCTCCTCTTGAGACAGCCACCATGGCTGATCTTGAAAGTGTATTTGAGAAGTTTGTCGATGAATTGCTAGTTACACAAAATGTTGAACCTGAAAAGGATGATGTCCTTGATGACGATCTTGATGAGATTACTCCTCTAGCTGAGATTCTCTCAAAGAAAAGCGAAGATGAAGATAAAAATGAAGCTCCTAATGAAAAAGTTGGAGCTGGTGATAAAACAAATACTGAAGCCTCTCATGAATCCCTCGAAACTGAGTCTCTAAAGTCCCTCTTTGAAGATGAATTTGACTGGGGTTTTCAAAGTATCTCAAAAACTCAAGAATCTTGTCTTCCACGAGCTACTCGTGCTTCAGCTAAAAATAAGGGAAAGCAAGCGGCAGGTTCTGGCATCCCATTTGTTCCCATTGATGGAGTGTCATTCCACACTGAAGACGGTGTGAAATTTTGGAATTTTGTGGTGAAAAGAAACATAATTGATGAAAAGGAACTTTTTGAACGTCTACAATAG

Protein sequence

MMVEEDVPSSTTNKYDVRVRGLPSIQTEVRVPPRQNEEDLESISFTKPGIKNINPSSKVESSPATEEVTRDIESKNVIDQSTACLFDNMVLNISEFNVKNDVVGSESSMEENVVVPVSTVVESEEVLASKENVLHEFIDKIVSETIVSLSILPKYCLSNSKEKVTCVENPKNLQSVEEGVNAPLETATMADLESVFEKFVDELLVTQNVEPEKDDVLDDDLDEITPLAEILSKKSEDEDKNEAPNEKVGAGDKTNTEASHESLETESLKSLFEDEFDWGFQSISKTQESCLPRATRASAKNKGKQAAGSGIPFVPIDGVSFHTEDGVKFWNFVVKRNIIDEKELFERLQ

Homology

[Close]

BLAST of HG10021659 vs. NCBI nr
Match: KAA0049619.1 (uncharacterized protein E6C27_scaffold163G00790 [Cucumis melo var. makuwa] >TYK15979.1 uncharacterized protein E5676_scaffold94G001040 [Cucumis melo var. makuwa])

HSP 1 Score: 75.5 bits (184), Expect = 1.0e-09
Identity = 40/97 (41.24%), Postives = 55/97 (56.70%), Query Frame = 0


Query: 248 VGAGDKTNTEASHESLETESLKSLFEDEFDWGFQSISKTQESCLPRATRASAKNKGKQAA 307
           V  G K +T  S  S      +     + +WGF   S  +     R TRAS K KGK+ +
Sbjct: 33  VSRGTKPHTICSSYSFAILKPQVFSGSDSNWGFHGDSDVEAIKKARVTRASTKGKGKRPS 92

Query: 308 GSGIPFVPIDGVSFHTEDGVKFWNFVVKRNIIDEKEL 345
           GS +P V +DGVSFHT++    W F+VK+NI++EKEL
Sbjct: 93  GSTVPSVSLDGVSFHTKECASLWKFIVKKNIVNEKEL 129

[Close]

BLAST of HG10021659 vs. NCBI nr
Match: XP_038904458.1 (uncharacterized protein LOC120090822 [Benincasa hispida])

HSP 1 Score: 60.1 bits (144), Expect = 4.5e-05
Identity = 25/41 (60.98%), Postives = 31/41 (75.61%), Query Frame = 0


Query: 309 SGIPFVPIDGVSFHTEDGVKFWNFVVKRNIIDEKELFERLQ 350
           S +PFVP+DGVSFHTE+    W +VVKRNI+ EKEL +  Q
Sbjct: 2   SNVPFVPLDGVSFHTEESASLWKYVVKRNIVHEKELSDCTQ 42

[Close]

BLAST of HG10021659 vs. NCBI nr
Match: TYK16303.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 57.8 bits (138), Expect = 2.2e-04
Identity = 36/113 (31.86%), Postives = 55/113 (48.67%), Query Frame = 0


Query: 259 SHESLETESLKSLFEDEFDWGFQS-ISKTQESCLPRATRASAKN---------------- 318
           S ++    SL S+ ED+ D   +  + +T+E  +P AT  S ++                
Sbjct: 510 SFQASPQTSLPSVAEDDDDTDDEDYVPRTEEKTVPEATSTSIEDHSTFHAKHPSDHRSTE 569

Query: 319 -------KGKQAAGSGIPFVPIDGVSFHTEDGVKFWNFVVKRNIIDEKELFER 348
                   G+Q     +PFVPIDGVSFH+E+    WN+VVKR I DE  + ++
Sbjct: 570 EPVISTKAGRQKIPPNVPFVPIDGVSFHSEEDAHKWNYVVKRRIADEANIVDQ 622

[Close]

BLAST of HG10021659 vs. NCBI nr
Match: KAA0063048.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 57.8 bits (138), Expect = 2.2e-04
Identity = 36/113 (31.86%), Postives = 55/113 (48.67%), Query Frame = 0


Query: 259 SHESLETESLKSLFEDEFDWGFQS-ISKTQESCLPRATRASAKN---------------- 318
           S ++    SL S+ ED+ D   +  + +T+E  +P AT  S ++                
Sbjct: 539 SFQASPQTSLPSVAEDDDDTDDEDYVPRTEEKTVPEATSTSIEDHSTFHAKHPSDHRSTE 598

Query: 319 -------KGKQAAGSGIPFVPIDGVSFHTEDGVKFWNFVVKRNIIDEKELFER 348
                   G+Q     +PFVPIDGVSFH+E+    WN+VVKR I DE  + ++
Sbjct: 599 EPVISTKAGRQKIPPNVPFVPIDGVSFHSEEDAHKWNYVVKRRIADEANIVDQ 651

[Close]

BLAST of HG10021659 vs. NCBI nr
Match: XP_008441650.1 (PREDICTED: uncharacterized protein LOC103485731 [Cucumis melo])

HSP 1 Score: 57.0 bits (136), Expect = 3.8e-04
Identity = 41/141 (29.08%), Postives = 64/141 (45.39%), Query Frame = 0


Query: 237 DEDKNEAPNEKVGAGDKTNTEASHESLETESLKSLFEDEFDWGFQSISKTQESCLPRAT- 296
           D+D +++ +E    G K  TEA   S  TE+ +S   ++  +  +S  +  ES +PR+T 
Sbjct: 116 DDDDDDSDDEDYAPGTKEKTEAEATSTSTEN-QSASPEKDPYDHRSTEEPGESSIPRSTE 175

Query: 297 -----------------------------RASAKNKGKQAAGSGIPFVPIDGVSFHTEDG 348
                                        R  +   G+Q     +P VPIDGVSFH+E+ 
Sbjct: 176 GPSESSTPVSTLAHVASSSGFRRPPTKGQRVVSTKTGRQKVPPNVPSVPIDGVSFHSEEE 235

[Close]

BLAST of HG10021659 vs. ExPASy TrEMBL
Match: A0A5D3D0J7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G001040 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 5.0e-10
Identity = 40/97 (41.24%), Postives = 55/97 (56.70%), Query Frame = 0


Query: 248 VGAGDKTNTEASHESLETESLKSLFEDEFDWGFQSISKTQESCLPRATRASAKNKGKQAA 307
           V  G K +T  S  S      +     + +WGF   S  +     R TRAS K KGK+ +
Sbjct: 33  VSRGTKPHTICSSYSFAILKPQVFSGSDSNWGFHGDSDVEAIKKARVTRASTKGKGKRPS 92

Query: 308 GSGIPFVPIDGVSFHTEDGVKFWNFVVKRNIIDEKEL 345
           GS +P V +DGVSFHT++    W F+VK+NI++EKEL
Sbjct: 93  GSTVPSVSLDGVSFHTKECASLWKFIVKKNIVNEKEL 129

[Close]

BLAST of HG10021659 vs. ExPASy TrEMBL
Match: A0A5D3CWQ1 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G00800 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.1e-04
Identity = 36/113 (31.86%), Postives = 55/113 (48.67%), Query Frame = 0


Query: 259 SHESLETESLKSLFEDEFDWGFQS-ISKTQESCLPRATRASAKN---------------- 318
           S ++    SL S+ ED+ D   +  + +T+E  +P AT  S ++                
Sbjct: 510 SFQASPQTSLPSVAEDDDDTDDEDYVPRTEEKTVPEATSTSIEDHSTFHAKHPSDHRSTE 569

Query: 319 -------KGKQAAGSGIPFVPIDGVSFHTEDGVKFWNFVVKRNIIDEKELFER 348
                   G+Q     +PFVPIDGVSFH+E+    WN+VVKR I DE  + ++
Sbjct: 570 EPVISTKAGRQKIPPNVPFVPIDGVSFHSEEDAHKWNYVVKRRIADEANIVDQ 622

[Close]

BLAST of HG10021659 vs. ExPASy TrEMBL
Match: A0A5A7V603 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G001610 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.1e-04
Identity = 36/113 (31.86%), Postives = 55/113 (48.67%), Query Frame = 0


Query: 259 SHESLETESLKSLFEDEFDWGFQS-ISKTQESCLPRATRASAKN---------------- 318
           S ++    SL S+ ED+ D   +  + +T+E  +P AT  S ++                
Sbjct: 539 SFQASPQTSLPSVAEDDDDTDDEDYVPRTEEKTVPEATSTSIEDHSTFHAKHPSDHRSTE 598

Query: 319 -------KGKQAAGSGIPFVPIDGVSFHTEDGVKFWNFVVKRNIIDEKELFER 348
                   G+Q     +PFVPIDGVSFH+E+    WN+VVKR I DE  + ++
Sbjct: 599 EPVISTKAGRQKIPPNVPFVPIDGVSFHSEEDAHKWNYVVKRRIADEANIVDQ 651

[Close]

BLAST of HG10021659 vs. ExPASy TrEMBL
Match: A0A5D3DJ92 (Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1607G00100 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.8e-04
Identity = 41/141 (29.08%), Postives = 64/141 (45.39%), Query Frame = 0


Query: 237 DEDKNEAPNEKVGAGDKTNTEASHESLETESLKSLFEDEFDWGFQSISKTQESCLPRAT- 296
           D+D +++ +E    G K  TEA   S  TE+ +S   ++  +  +S  +  ES +PR+T 
Sbjct: 130 DDDDDDSDDEDYAPGTKEKTEAEATSTSTEN-QSASPEKDPYDHRSTEEPGESSIPRSTE 189

Query: 297 -----------------------------RASAKNKGKQAAGSGIPFVPIDGVSFHTEDG 348
                                        R  +   G+Q     +P VPIDGVSFH+E+ 
Sbjct: 190 GPSESSTPVSTLAHVASSSGFRRPPTKGQRVVSTKTGRQKVPPNVPSVPIDGVSFHSEEE 249

[Close]

BLAST of HG10021659 vs. ExPASy TrEMBL
Match: A0A1S3B3W7 (uncharacterized protein LOC103485731 OS=Cucumis melo OX=3656 GN=LOC103485731 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.8e-04
Identity = 41/141 (29.08%), Postives = 64/141 (45.39%), Query Frame = 0


Query: 237 DEDKNEAPNEKVGAGDKTNTEASHESLETESLKSLFEDEFDWGFQSISKTQESCLPRAT- 296
           D+D +++ +E    G K  TEA   S  TE+ +S   ++  +  +S  +  ES +PR+T 
Sbjct: 116 DDDDDDSDDEDYAPGTKEKTEAEATSTSTEN-QSASPEKDPYDHRSTEEPGESSIPRSTE 175

Query: 297 -----------------------------RASAKNKGKQAAGSGIPFVPIDGVSFHTEDG 348
                                        R  +   G+Q     +P VPIDGVSFH+E+ 
Sbjct: 176 GPSESSTPVSTLAHVASSSGFRRPPTKGQRVVSTKTGRQKVPPNVPSVPIDGVSFHSEEE 235

The following BLAST results are available for this feature:

BLAST of HG10021659 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0049619.1	1.0e-09	41.24	uncharacterized protein E6C27_scaffold163G00790 [Cucumis melo var. makuwa] >TYK1...	[more]
XP_038904458.1	4.5e-05	60.98	uncharacterized protein LOC120090822 [Benincasa hispida]	[more]
TYK16303.1	2.2e-04	31.86	gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0063048.1	2.2e-04	31.86	gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
XP_008441650.1	3.8e-04	29.08	PREDICTED: uncharacterized protein LOC103485731 [Cucumis melo]	[more]

BLAST of HG10021659 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10021659 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D0J7	5.0e-10	41.24	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CWQ1	1.1e-04	31.86	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G0...	[more]
A0A5A7V603	1.1e-04	31.86	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G...	[more]
A0A5D3DJ92	1.8e-04	29.08	Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A1S3B3W7	1.8e-04	29.08	uncharacterized protein LOC103485731 OS=Cucumis melo OX=3656 GN=LOC103485731 PE=...	[more]

BLAST of HG10021659 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 229..266
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 51..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10021659.1	HG10021659.1	mRNA