HG10021653 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10021653
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionMuDRA-like transposase
LocationChr05: 13218737 .. 13219471 (-)
RNA-Seq ExpressionHG10021653
SyntenyHG10021653
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAACAAAAGCAACTTTTTATTCGGTATGGTGGTACATGGAATGTCAAAGAAGAATGCTACAAGGGAGGTTGTTTCAAGGGTATCATGGTACCGAGCACGCTGAATTATAGTCAACTAAGTGCTACATTATATGAACTTCCAAATGTCAGTTCTTTAGAGTTCAACATCGTAATGAGGGTCAAATACAAGGTGGATTATGAATGTCCTTTGGTTTGCATAATAGATGATGACGATGTTAGATTTATCCTCGAGGAAATTGATCGTAATAGACCTCCTGTATTCGTCAGTTTTGAGGAAACCAATCGAGATGGAACTTTTGAGGACACATTTACAGAACATGAACCCTTGTCTGCAATAGGTAACAATGATGAGTTATTTTTTTTTCCATCAATAGTCTCTATAGAAAATGACAGCTTGAACCCATGGACGGCTAACCAAAATTATTCAGGTCAGAAGCGGGGACGTAATAAAACCGTTGGTCTTACCTCACCCCACCCCATCCCACATCCTACTACAAGTGATGAGATAGGAGGTCCTCTTGTTGGTGGTGTTGATATTGTTGGGAGTACCTCATCCCAGCCAACTCCATGTCCAACTACTTCTACTGGAATAGTGGGTGGTCCTTCTGTTGGTGGTAGTACATCACTCCACCCCATCCTACATCCTACTACATGCATTGGAATTGGTGGTATTTCTGTGTTGAATGTACTCCAACAGAATTCGATTACTTAA

mRNA sequence

ATGGAACAAAAGCAACTTTTTATTCGGTATGGTGGTACATGGAATGTCAAAGAAGAATGCTACAAGGGAGGTTGTTTCAAGGGTATCATGGTACCGAGCACGCTGAATTATAGTCAACTAAGTGCTACATTATATGAACTTCCAAATGTCAGTTCTTTAGAGTTCAACATCGTAATGAGGGTCAAATACAAGGTGGATTATGAATGTCCTTTGGTTTGCATAATAGATGATGACGATGTTAGATTTATCCTCGAGGAAATTGATCGTAATAGACCTCCTGTATTCGTCAGTTTTGAGGAAACCAATCGAGATGGAACTTTTGAGGACACATTTACAGAACATGAACCCTTGTCTGCAATAGGTAACAATGATGAGTTATTTTTTTTTCCATCAATAGTCTCTATAGAAAATGACAGCTTGAACCCATGGACGGCTAACCAAAATTATTCAGGTCAGAAGCGGGGACGTAATAAAACCGTTGGTCTTACCTCACCCCACCCCATCCCACATCCTACTACAAGTGATGAGATAGGAGGTCCTCTTGTTGGTGGTGTTGATATTGTTGGGAGTACCTCATCCCAGCCAACTCCATGTCCAACTACTTCTACTGGAATAGTGGGTGGTCCTTCTGTTGGTGGTAGTACATCACTCCACCCCATCCTACATCCTACTACATGCATTGGAATTGGTGGTATTTCTGTGTTGAATGTACTCCAACAGAATTCGATTACTTAA

Coding sequence (CDS)

ATGGAACAAAAGCAACTTTTTATTCGGTATGGTGGTACATGGAATGTCAAAGAAGAATGCTACAAGGGAGGTTGTTTCAAGGGTATCATGGTACCGAGCACGCTGAATTATAGTCAACTAAGTGCTACATTATATGAACTTCCAAATGTCAGTTCTTTAGAGTTCAACATCGTAATGAGGGTCAAATACAAGGTGGATTATGAATGTCCTTTGGTTTGCATAATAGATGATGACGATGTTAGATTTATCCTCGAGGAAATTGATCGTAATAGACCTCCTGTATTCGTCAGTTTTGAGGAAACCAATCGAGATGGAACTTTTGAGGACACATTTACAGAACATGAACCCTTGTCTGCAATAGGTAACAATGATGAGTTATTTTTTTTTCCATCAATAGTCTCTATAGAAAATGACAGCTTGAACCCATGGACGGCTAACCAAAATTATTCAGGTCAGAAGCGGGGACGTAATAAAACCGTTGGTCTTACCTCACCCCACCCCATCCCACATCCTACTACAAGTGATGAGATAGGAGGTCCTCTTGTTGGTGGTGTTGATATTGTTGGGAGTACCTCATCCCAGCCAACTCCATGTCCAACTACTTCTACTGGAATAGTGGGTGGTCCTTCTGTTGGTGGTAGTACATCACTCCACCCCATCCTACATCCTACTACATGCATTGGAATTGGTGGTATTTCTGTGTTGAATGTACTCCAACAGAATTCGATTACTTAA

Protein sequence

MEQKQLFIRYGGTWNVKEECYKGGCFKGIMVPSTLNYSQLSATLYELPNVSSLEFNIVMRVKYKVDYECPLVCIIDDDDVRFILEEIDRNRPPVFVSFEETNRDGTFEDTFTEHEPLSAIGNNDELFFFPSIVSIENDSLNPWTANQNYSGQKRGRNKTVGLTSPHPIPHPTTSDEIGGPLVGGVDIVGSTSSQPTPCPTTSTGIVGGPSVGGSTSLHPILHPTTCIGIGGISVLNVLQQNSIT
Homology
BLAST of HG10021653 vs. NCBI nr
Match: XP_038888098.1 (uncharacterized protein LOC120078004 [Benincasa hispida])

HSP 1 Score: 89.0 bits (219), Expect = 6.3e-14
Identity = 56/155 (36.13%), Postives = 84/155 (54.19%), Query Frame = 0

Query: 1   MEQKQLFIRYGGTWNVKEECYKGGCFKGIMVPSTLNYSQLSATLYELPNVSSLEFNIVMR 60
           M +K +  RYG  W+  +  Y GG   GI+VP TL Y +  A +Y + NV+ LEF++VMR
Sbjct: 120 MTEKCVLFRYGSHWDENQNLYVGGELTGIVVPITLKYKEFKAHIYRVANVNCLEFDVVMR 179

Query: 61  VKYKVDYECPLVCIIDDDDVRFILEEIDRNRPPVFV---SFEETN----RDGTFED---- 120
           VKYK+D+E P + I +DDDV   L   D +R  ++V   S+ + N     DG   D    
Sbjct: 180 VKYKLDFEAPPLYIQNDDDVYIFLCLDDLSRVQLYVTLKSYHDENVKMIHDGIGVDRQYE 239

Query: 121 ---TFTEHEPLSAIGNNDELFFFPSIVSIENDSLN 142
               F + E    +  N +L    S +SI+ND+++
Sbjct: 240 ASYEFNQEECDIPLSMNTQL----STLSIDNDNIH 270

BLAST of HG10021653 vs. NCBI nr
Match: XP_038891939.1 (uncharacterized protein LOC120081277 isoform X2 [Benincasa hispida])

HSP 1 Score: 82.4 bits (202), Expect = 5.9e-12
Identity = 49/157 (31.21%), Postives = 81/157 (51.59%), Query Frame = 0

Query: 10  YGGTWNVKEECYKGGCFKGIMVPSTLNYSQLSATLYELPNVSSLEFNIVMRVKYKVDYEC 69
           YGG W+  E     G   GI+VP +L Y ++ + +Y + NVSS EF+++++VKYK++YE 
Sbjct: 45  YGGDWDENESSCIRGQLAGILVPVSLKYEEIKSHIYGVTNVSSSEFDLILKVKYKLEYEA 104

Query: 70  PLVCIIDDDDVRFILEEIDRNRPPVFVSFEET--------NRDGTFEDTFTEHEPLSAIG 129
           P   I +DD +RF+L   D +R  + V+ +           R+ +++DT  E +   +  
Sbjct: 105 PPQYIRNDDGIRFLLFREDLSRLQLSVTLKSNVDENIRMGFRNVSYDDTTMERQYKESYQ 164

Query: 130 NNDELF-------FFPSIVSIENDSLNPWTANQNYSG 152
              E +         PSI+S++ND  N    N    G
Sbjct: 165 YRQEEYDIPLSTNTVPSILSLDNDRTNLTRLNSELGG 201

BLAST of HG10021653 vs. NCBI nr
Match: XP_038891938.1 (uncharacterized protein LOC120081277 isoform X1 [Benincasa hispida])

HSP 1 Score: 82.4 bits (202), Expect = 5.9e-12
Identity = 49/157 (31.21%), Postives = 81/157 (51.59%), Query Frame = 0

Query: 10  YGGTWNVKEECYKGGCFKGIMVPSTLNYSQLSATLYELPNVSSLEFNIVMRVKYKVDYEC 69
           YGG W+  E     G   GI+VP +L Y ++ + +Y + NVSS EF+++++VKYK++YE 
Sbjct: 76  YGGDWDENESSCIRGQLAGILVPVSLKYEEIKSHIYGVTNVSSSEFDLILKVKYKLEYEA 135

Query: 70  PLVCIIDDDDVRFILEEIDRNRPPVFVSFEET--------NRDGTFEDTFTEHEPLSAIG 129
           P   I +DD +RF+L   D +R  + V+ +           R+ +++DT  E +   +  
Sbjct: 136 PPQYIRNDDGIRFLLFREDLSRLQLSVTLKSNVDENIRMGFRNVSYDDTTMERQYKESYQ 195

Query: 130 NNDELF-------FFPSIVSIENDSLNPWTANQNYSG 152
              E +         PSI+S++ND  N    N    G
Sbjct: 196 YRQEEYDIPLSTNTVPSILSLDNDRTNLTRLNSELGG 232

BLAST of HG10021653 vs. NCBI nr
Match: XP_022154925.1 (uncharacterized protein LOC111022071 [Momordica charantia])

HSP 1 Score: 81.6 bits (200), Expect = 1.0e-11
Identity = 39/94 (41.49%), Postives = 57/94 (60.64%), Query Frame = 0

Query: 4  KQLFIRYGGTWNVKEECYKGGCFKGIMVPSTLNYSQLSATLYELPNVSSLEFNIVMRVKY 63
          K LFIR+GGTW      Y GG  KGI+VP T+ Y +L   L+ L  V    +++V+RV Y
Sbjct: 5  KSLFIRFGGTWEDNTNSYVGGELKGIIVPLTVTYKELKNRLFRLMKVDQNGYDLVIRVPY 64

Query: 64 KVDYECPLVCIIDDDDVRFILEEIDRNRPPVFVS 98
           +  + P + + DDDD+RF L +   ++ P+FVS
Sbjct: 65 HLACDSPPMFVTDDDDLRFALVQEQVSKVPLFVS 98

BLAST of HG10021653 vs. NCBI nr
Match: XP_038902319.1 (trichohyalin-like [Benincasa hispida])

HSP 1 Score: 76.3 bits (186), Expect = 4.2e-10
Identity = 34/70 (48.57%), Postives = 47/70 (67.14%), Query Frame = 0

Query: 1   MEQKQLFIRYGGTWNVKEECYKGGCFKGIMVPSTLNYSQLSATLYELPNVSSLEFNIVMR 60
           M +K + I Y G W+  +  Y GG   GI+VP TL Y +L A +Y + N+S LEF++VMR
Sbjct: 233 MTRKCVLIGYRGHWDENQNLYVGGELIGIVVPITLKYEELKAHIYRIENISCLEFDVVMR 292

Query: 61  VKYKVDYECP 71
           VKYK+D+E P
Sbjct: 293 VKYKLDFEAP 302

BLAST of HG10021653 vs. ExPASy TrEMBL
Match: A0A6J1DL08 (uncharacterized protein LOC111022071 OS=Momordica charantia OX=3673 GN=LOC111022071 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 4.8e-12
Identity = 39/94 (41.49%), Postives = 57/94 (60.64%), Query Frame = 0

Query: 4  KQLFIRYGGTWNVKEECYKGGCFKGIMVPSTLNYSQLSATLYELPNVSSLEFNIVMRVKY 63
          K LFIR+GGTW      Y GG  KGI+VP T+ Y +L   L+ L  V    +++V+RV Y
Sbjct: 5  KSLFIRFGGTWEDNTNSYVGGELKGIIVPLTVTYKELKNRLFRLMKVDQNGYDLVIRVPY 64

Query: 64 KVDYECPLVCIIDDDDVRFILEEIDRNRPPVFVS 98
           +  + P + + DDDD+RF L +   ++ P+FVS
Sbjct: 65 HLACDSPPMFVTDDDDLRFALVQEQVSKVPLFVS 98

BLAST of HG10021653 vs. ExPASy TrEMBL
Match: A0A2I7YUI4 (MuDRA-like transposase OS=Cucumis sativus OX=3659 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 2.3e-09
Identity = 35/101 (34.65%), Postives = 59/101 (58.42%), Query Frame = 0

Query: 1   MEQKQLFIRYGGTWNVKEECYKGGCFKGIMVPSTLNYSQLSATLYELPNVSSLEFNIVMR 60
           M    + +RYGG W+ +   Y+GG  KGI+V   + +  L A LY+L  V   +F++++R
Sbjct: 1   MSHIPMLVRYGGMWDERRRKYEGGMLKGIVVSKEITHKDLQAELYDLAEVDPSKFDVMIR 60

Query: 61  VKY--KVDYECPLVCIIDDDDVRFILEEIDRNRPPVFVSFE 100
             Y  KV++E P   + +D D++F L   +  + P++VSFE
Sbjct: 61  CIYEIKVEHEAPTFELSNDRDLKFYLLSENPLKVPLYVSFE 101

BLAST of HG10021653 vs. ExPASy TrEMBL
Match: A0A6N0C346 (MURA transposase OS=Cucumis sativus OX=3659 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 2.3e-09
Identity = 35/101 (34.65%), Postives = 59/101 (58.42%), Query Frame = 0

Query: 1   MEQKQLFIRYGGTWNVKEECYKGGCFKGIMVPSTLNYSQLSATLYELPNVSSLEFNIVMR 60
           M    + +RYGG W+ +   Y+GG  KGI+V   + +  L A LY+L  V   +F++++R
Sbjct: 1   MSHIPMLVRYGGMWDERRRKYEGGMLKGIVVSKEITHKDLQAELYDLAEVDPSKFDVMIR 60

Query: 61  VKY--KVDYECPLVCIIDDDDVRFILEEIDRNRPPVFVSFE 100
             Y  KV++E P   + +D D++F L   +  + P++VSFE
Sbjct: 61  CIYEIKVEHEAPTFELSNDRDLKFYLLSENPLKVPLYVSFE 101

BLAST of HG10021653 vs. ExPASy TrEMBL
Match: A0A6J1DPC2 (uncharacterized protein LOC111022579 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111022579 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 2.5e-08
Identity = 38/108 (35.19%), Postives = 58/108 (53.70%), Query Frame = 0

Query: 1   MEQKQLFIRYGGTWNVKEECYKGGCFKGIMVPSTLNYSQLSATLYELPNVSSLEFNIVMR 60
           M + ++F+RYGG WN K+  Y+GG  KGI+V   + Y  L   LY L      E ++ ++
Sbjct: 1   MTRVRIFVRYGGVWNDKQTEYQGGLLKGIVVCKEITYQDLLDELYALTEADPKESDMKIK 60

Query: 61  VKY--KVDYECPLVCIIDDDDVRFILEEIDRNRPPVFVSFEETNRDGT 107
             Y  K   + P   I +D D+ F L   D +  P+++SFE  +RD T
Sbjct: 61  CIYEIKARNQTPPFEISNDRDLNFYLMGEDTSEVPLYISFEPRSRDLT 108

BLAST of HG10021653 vs. ExPASy TrEMBL
Match: A0A6J1DRN0 (uncharacterized protein LOC111022579 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111022579 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 2.5e-08
Identity = 38/108 (35.19%), Postives = 58/108 (53.70%), Query Frame = 0

Query: 1   MEQKQLFIRYGGTWNVKEECYKGGCFKGIMVPSTLNYSQLSATLYELPNVSSLEFNIVMR 60
           M + ++F+RYGG WN K+  Y+GG  KGI+V   + Y  L   LY L      E ++ ++
Sbjct: 1   MTRVRIFVRYGGVWNDKQTEYQGGLLKGIVVCKEITYQDLLDELYALTEADPKESDMKIK 60

Query: 61  VKY--KVDYECPLVCIIDDDDVRFILEEIDRNRPPVFVSFEETNRDGT 107
             Y  K   + P   I +D D+ F L   D +  P+++SFE  +RD T
Sbjct: 61  CIYEIKARNQTPPFEISNDRDLNFYLMGEDTSEVPLYISFEPRSRDLT 108

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038888098.16.3e-1436.13uncharacterized protein LOC120078004 [Benincasa hispida][more]
XP_038891939.15.9e-1231.21uncharacterized protein LOC120081277 isoform X2 [Benincasa hispida][more]
XP_038891938.15.9e-1231.21uncharacterized protein LOC120081277 isoform X1 [Benincasa hispida][more]
XP_022154925.11.0e-1141.49uncharacterized protein LOC111022071 [Momordica charantia][more]
XP_038902319.14.2e-1048.57trichohyalin-like [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DL084.8e-1241.49uncharacterized protein LOC111022071 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
A0A2I7YUI42.3e-0934.65MuDRA-like transposase OS=Cucumis sativus OX=3659 PE=4 SV=1[more]
A0A6N0C3462.3e-0934.65MURA transposase OS=Cucumis sativus OX=3659 PE=4 SV=1[more]
A0A6J1DPC22.5e-0835.19uncharacterized protein LOC111022579 isoform X2 OS=Momordica charantia OX=3673 G... [more]
A0A6J1DRN02.5e-0835.19uncharacterized protein LOC111022579 isoform X1 OS=Momordica charantia OX=3673 G... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10021653.1HG10021653.1mRNA