HG10021643 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10021643
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	chloroplast stem-loop binding protein of 41 kDa b, chloroplastic
Location	Chr05: 13025646 .. 13033434 (-)
RNA-Seq Expression	HG10021643
Synteny	HG10021643

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACATTAGAAAGACGAACAAAAGATACCAATCCCCAAGGATCAAAAATGGGAAGAACATTGCAAGTCATTACCTGTTGTTTAGTGTTGGTATTTATGTTTTCATCCCTTTCAACTTATTCTTTACCTTTATCAACTCGAAGAAGATGGATCATTGATTCTAAAACAGGACGTCGAGTGAAGCTAGTATGTGTGAATTGGCCTTCCCATACCCAAAGCATGTTGGTAAAAGGCCTAAACCATCGGCCATTAAAAGAACTTGCTGACGAGGCAATCAAGTTGAAGTTCAATTGTGTGCGTCTCACATATGCAACCCACATGTTCACTCGCTATGCCAATAGGACAATTGAAGAGAACTTTGACCTTCTAGATTTGAAACAAGCCAAAGCTGGATTGGCTCAATATAACCCTTTTGTGTTGAACAAGACCATCGTTGAAGCCTATGAAGCTGTTGTTGATGTGCTTGGGGCAAGTGGTTTGATGGTGATTGTTGACAATCACATTAGCCAACCAAGATGGTGTTGTTCTCTTGATGATGGCAATGGATTCTTTGGAAACCGCAATTTTGACCCTCAAGAATGGTTGCAAGGTTTGAGCTTAGTCGCTCAGCATTTTATCAACAAATCAACGGTATGTAATATTACAAGATTTTCTCAGATTTTTTAAATTTAACTCCAAACATTTAAAGATTCAAGTTGTAGTTGTATTCTATTAAAATTGAAACAAGGTTCTATGACATGTACAGGTGATAGCAATGAGCCTACGAAATGAGATACGGGGGACAATGGAAAATGCAAATGATTGGAACAACTATGTAACTCAAGGAGTAACAACAATCCACAACATAAACCCGAATGTTTTAGTGATTGTTTCAGGCCTAAATTATGACAACGATCTTCAATGCTTAAAGGAAAAGCCCTTGACCGTAAACACTTTAGACAATAAGTTGGTTTTGAGGCACACTTGTATTCTTTTAGTGGAGATGAGAGTAGGTATGTACAACAACCGTTAAACAATATTTGTGCCAATGTCATCAATGGCTTTCTAGACCATGCAGTGTTTGTAATGGAAGGACCAAATCCATTTCCTTTGTTTGTTAGCGAATATGGGTACGATCAAAGGGGGACAAACGATGCTGAAAATAGGTACATGAGTTGCTTCACAGCTCATCTTGCTAAAAAGGACATGGATTGGGCACTTTGGACTTGGCAGGGCAGCTATTATTATAGGGAAGGCGAAGCAGAGTCTACAGAAGTATTTGGAGTCCTTAACTCCAATTGGACTCAAATTCAAAATCCTAACTTTACTAAGAAGTTTCAGCTATTGCAGACCATGTTGCAAGGTAATTGTATTAATTATTCTAATAAAAAATAATGGTCCATAAAATAAATTTTTTTAAGTATACACAAACCATAAATTATTAAACCAATTTGAAAGTTTAAGATATAATTTGGGTTGTATTTTTGTGGCATTACAGATCCAAACTCCAATGTATCATCTTCTTATGTTATGTATCATCCACAAAGTGGTCAATGTGTCCAAGCTTCAAATGACAATGCTGAATTATTTTTGAGCAATTGCTCCACCTCAAGTCTATGGAGTCATGGTGATGATGGCACTCCAATCAAGATGACGAAAAATGGTTTGTGTTTAAAGGCTAATGGAGAAGGCATTGGAGCATCGCTCTCAAGTGATTGTTTGGGTCAACAAAGTGTTTGGAGAGCAATTTCTAGTAGTAATCTTCATTTGGCCACCATCACTCAAGATGGGAAGAGTCTTTGCTTGCAGGCTGTTGAAAGCTCCAATTCTTCAAAACTTGTGACCAACTCTTGTATTTGTACTAATGGCGAGCCAAATTGCCTTCAAGACACCCAAAGTCAATGGTTCGAACTTCTTGCAACCAATACATTATAATTAACTTTATATTTGTAACATTGATAACTGGAAATTATTCATTACTTGTGATCATGATGGAGGTAGTTCTTTTTACTTTTAGTCATGCTACACATTACAAGTTTAGTCTTCTTTTTTTTTTTTTTCTTTAGTTGGCAGATAATAATATCCATCTCTTTTCTCAATATAATATTACTAAATATCATGCAAGTCAACTCTCTAATCGGTGAGGCCTTTAGAAGTGACAATAAGTATCTAGACTAAATAATACAATCTTAAAATCTTAAAAACTCATATAGGAAAGTTGCATACACTTTAAAATGCTAGGGATCAAGATAAAAGTTCAAATTTTACTTCAATATATAGAATGTTAAAAAATTTCAAAGAAGAAATTGTGAAACAAAAACATCCAAAGTAGGTCATAAGCTTATCATAATCACTCACTACACATCATTCAATAATTTAAATCATGCTAAAATTTAAGCCTAAAATTAACTCCTAATTAATTCATGATGAAAAGATGGGGCAAAGAAGAATAGAGGAGAAAATTAGGGTCTACTGGACCTTTGTGAGAGATTGTGATGCAACTATTAATCGATCTCTCTATATTTTCAAACGGTGTAGAAATTAACATTGTAAATTTTCTTGCTACACTTTCTCACAATGAGCTTCTCTACACCACAGATGACGATGCCTCGATGACATAGGGGAGTTTTAGGTTCCCCTCTCTATCTTTATTTGCTTTCACCAAGATAGATTTACAAGTTTTCTTAGTTCATTGCTTTCGTTAAGTTTTGAAGTTTTGTTTGTTTAGATATTTTGTTTTAGTTGTTTTTAGAACATGGATTGCTTTTGGTTTAAGAACAGTTCATGACTCTAACTCATACATATTTGAAAAATAAAATCTTTGTTTAAAAAAAAAAAGAAAGAAAGAAAAAAGTGTGCAAAAATCTGTCTTTAGTTGTTTGGTTAAAAAGACTTCATAAGCTTATGACCTACTTTGGATGACTCACCAAAGTAGGTCATAAGCTTATCATAATCACTCACCAAACAACTTATCATAATCATTCAAGTAGGTCATAAGCTTATCATAATCACTCACCAAACAACTTGAAGTTTTCAATATCGTTTAACTTGCACGATTCCCTCCATAAAACATTTAAGACCAAACTTCCTTTGTGTTTTTCTCTTCTCATTCAAACTTACCTCTGTTCTTCATTTCTCTTTGTCAATGAAGACATTGACAGCTTTAAATTTGGAAGTGGAAAGTTTGTGTTGAAATGTTATATTATGTTGTATCGTGTACTACTACTGGCACATAAAAAAATACTCCTCCTTCTAGACTTAACTTAGTAACTAGTGGCATTCATGACACTTGTGTTTTTCATTGCATGAATGGTTAATATAGGAAGTGAGTATGTGAAAACAATCTTAGTAGTTACTTGTATTCGTAGTAAGATTTTTTTCATGACACTCGTGTTAGCAAGCTGGAACAAAAGTATATGTGATAGAAAACTCTCTAAAAAAAGGAGAAAGAAAAAGAAAAGGAAATAGCCTAGTAGTAGTCTGAAACAAGTTTGAGGGGATAATGATAGAGTAACACAAAGAATAGTTAGTCTTTATGTTTTAAATGTTGGATCAATATGACAATCCTTGATGGATGTCAATTGAGTTTAATTAATTTTTTCTAAGTATGTTCAATTCAAACTAATTAGTATACTTTTTAAAACAAATTAATAAAAACTCTAATTAATGCTAAAAACAAAATTAATAAAAGGTATGGAACAATAAATTATTCAATCAATCTCAATCAACAAGAAAAATATCTAGCGCATACAACTAAAATTAATTGCAAAATTAAATAAGAAACAGTTAGAAAAAAACACACCGTAATTTTAGAGTGGTTTGCTCAAACTCGATCTACTCTACTTTGCAAAGCCTCTTGGGAATTTGAATAAAAAATTTCTTTGACTCTTTTCACAAATTAGAGCCCAACCACTACACCCTACTCGTTTTATTGGTTCAAGAGCAAACTCGGTTCTCTTCACGGGTTAAGATCAAACCGTTCAAAGTTTGGAAGCTTTAAAGAAAATTCTATCAAAATGTTACAAATGTCCCAAAATGTTGTTAAAATCTAGTTATAAAATATTATTAAAGTTTAGAACATTTGTGAAATATTAGTTATGTAGTAGGCTAATTACTTAAAATTTTCTTTTCAAAAGTGTTTTTGACCTTCTACTTGCACTACATAGTGTGATATTACTAAAATGAAATATTGTGCATGTAGGTTGGGGTCTCACCCTTGCTCCTTTAAGCTTAGGTTTTTTTTGCTCCACTCTCTCTATTTAATTCACTAGTCTCTCACTCTTTACGTCTCTTGCTCTTTTCGATAAAAAGAAGCAAGTAGCGAGAGTCAAGAGTACAGATCGAAAGCAAAGATGTATGATAGCGAGAGCAAGAATCGATAGCTTGATATGCATGCATAAAAAAATCGTTAGGGCAATTTTTGCCAATGATGATGCAAGTAAAATGGCAAAAAACTTGGGTAAATTTCATTTGAGTCCATAACTTAGGTCAACGGTAGAATTATCTCCACTTTGTGGTGCTGATGGCTTGAGTGGTACTGGGCAGACCAATGGCTTGAACAAGAAGTTGAAGTACCTCTTCCCATTTTATTACTTTTTTTCGCTTTTACGTTTTAAATTCGAAGGATTGAATGAGAGGTGGAGGCAAATCATTGTCTTATCCTCAAAACAATAGAATGAAATCCAGCCAGAGAAACAGAAGCCATGCCCTTAGAAGAACAACCCTTCAAATCCATTGCCCTTTTAATCCCACCACCAAACAGGAAGACAAAGGGTTTCTAAATGGGCATCATGGCAAAGCCAATGGCTGCTCAACACCAAAAATTGCCTTCATTCTCTGTTCTTCCTTCTTCCCTTTCCGACTTCAATGGCGCCAGACTCCACGCCCAAGTTCAGGTCCCTTTCTCTTCTCTTATCCCTATGTTATCTTTCTGTTCTGGGTTTCGTTCTTTACTATTAAATTTTAATTTAAACTGGAAATTATTTGAGGGGTTTTTGTTGTTAAGGCCTCAAAATCAGTGGAAACTGAATTGGGTTTCCCCATAAATGGCCATTGCAATTTGTGAGTTTCTTTTCACCTCTTATTTGATTGGATTCATATATGTAGTTTGCCACTAACCACAAAAGCTTAGAAGAAATAGGATACATCGAATATTAATTGGATTCACAAAACTCAATCAAAATGAAAGCTGTTAATATGAATTTGAGGGTGAATGAAGTTGGAAGCTTCGAAACATTCTGTTTTGATACCATGTTAAACACAAAAGCTTAAACGAGTTAGGATATGCTATGTGATGACTTGAATATTAATTTAATTCACGAAACCCGATTAACATGTGATCTGCTAACATGAATAAGAGGAGAAATGAGGTTTCCAACATGAGTCTTTTTGCTCTGATACCATGTTTAGCTACATTACGTTTGGAAGTGCAAGGCAATGCATTATGATGCTTTTAGTCCTTTATATGTTTTCTCAATTGGGTTTGGCCTTGGCTTGCAGTATAAAAGGAAGGTTATGCAGCCAAAAGGAGCATTACATGTTACAGCAAGTGCCAAGAAGAATATTCTTATAATGGGTGGCACCAGATTTATTGGTATATTCTTGTCTAGACTTCTTGTCAAAGAGGGTCATCAGGTTTTGCCATTCTCTTTCTTCTTTCTTTGCTTGCTACAGATTCCCAATTAGAATATTCATGGAACTTGCTAATTTTGGCAGGTGACTTTGTTTACAAGAGGAAAAGCACCCGTTACACAACAATTGCCAGGCGAATCCGAAGCAGATTATGCTGATTTTAAATCCAAGGTCTTCTAAGCTTCCATTTAAGCCTTAAAATCTGGTGGATTTGATTGAAAAGAAATGTGGTATCATGGTTTTGTTTTTAGTTTATTATTTGTGAGTTTGTTGGAGTACAGATGATAAATTTGTCTATTTGGTTCGCATTTCTCAGATTCTGCATTTGAAGGGAGACAGAAAAGACTTTGATTTTGTGAAATCCAGTCTCTCGGCCGCAGGGTTTGATGTAGTTTACGATATAAATGGTGAGTATGATTTTGGATCGATCTTTTTTGGTTTAAAATTCTTCACCCTGATTTGTTTTAAAACCATCATATCTAATCATTTTTTCGGTCTACACACTGCTGCATGAATTCAGGGCGAGAAGCCGTTGAAGTTGAACCAATTTTGGATGCTTTGCCTAAGCTAGAGCAGTAAGATTTCCTAAATGAAATCTGCTTTCTTTTCACAGCAATTGGTCTTAGTCATTTGCATCATGTTTTCCAATGCTAGAGAAACAATTTTGATATACAAAAGGATTTTGGTCCTTTCAAAGTCTACACATTATGTCACTGGCGATATGGGATTGGTTTGTCAAGTTTCTGTGCTGATGTAGTCGGATTGTTGGACTTCAATTCAGAAACGTTTCCGATATTGTTAATTTTATAAAGATATAGTATTGAGATATCAAGTTAAATTTAGATATTTCGAGGTCATATATTCAAATCATGGTGATGATCTAGTTAAAATTTAAATAGTTGTCCCATAAAATTAGTAAAGTACATAAGCTACTCCAAACATTACGGTTCACAACAAAACTTGGCATGCAAAACCATGAAACAGATAAAATGTGATGTATCTAATTATTCTCAGGTTTATATACTGCTCTTCAGCTGGTGTCTACCTCAAGTCTGATCTCCTACCTCATTTTGAGGTACCTTTTCTTTCCCTTGTAAAGAAAAGCTTTCAGTTTACCTTCTTTGTCCATTACCAAATAAGTGGTTCACTCAAAGCTTGACCTCCACCTCTCTTTTGTATCGTAGGTAGACGCAGTTGATCCAAAGAGTAGACATAAGGGAAAGCTTGAGACAGAGAGCTTACTGGCATCGAAGGACGTTAATTGGACTTCTATAAGACCAGTCTACATCTATGGTCCATTGAACTACAACCCTGTAGAAGAATGGTTCTTCCACCGGTTGAAAGCGGGTCGCCCCATTCCAATCCCCAACTCAGGCATTCAAATTACACAACTTGGTCACGTCAAGGTCTGTGCCATTAAGTACTATTTATGCAACAGGAACAAATCGATGTCTGTAATAGGTAGTGGTTCAATAAAGATGCTAAATAGAAAGCATTCACTGCCTTAATGTGAATAGCTTAGGAAAAGGATTATAGGTTCAAACATTTCTTGACATTAACGTAGCAATCGAGATCGAGTAAATAATTGAACCTTTTTGACAACTGCAGGATTTGGCAAAGGCTTTTATTCAGGTTCTTGGTAATGACAAGGCAAGCCAGCAAGTATTCAATATCTCTGGTGAAAAATATGTTACATTTGATGGGTTAGCCAAAGCTTGTGCTAAGGTACTCTCTTGAAGACATAATCAGGACACCATGGTATTTATCATTGAGATAACGTCTGAATTGGCTGATTTATCCTGTTATAAACTTCACAGGCTGGAGGCTTTCCCGAGCCCGAGATTGTCCACTATAACCCGAAGGAGTTTGACTTTGGAAAGAAGAAGCCATTCCCTTTCCGTGATCAGGTAACATGGTCGATTTAATGATGAGTATGTGGAGCTTATTGGACTTTGATTGCTGAAATAGCACCATTTTTGTTGATATAAATGTCATGCAGCATTTCTTTGCATCGGTTGAGAAAGCGAAGAGCGTGCTCGGGTGGAAGCCCGAATTTGATTTGGTGGAAGGTCTTGCAGACTCCTACAACTTGGACTTTGGCAGAGGCACTTTCAGAAAAGAGGCTGATTTCTCAACAGATGACATAATCCTTGGCAAGAGCTTGGTTCTTCAAGCTTGA

mRNA sequence

ATGACATTAGAAAGACGAACAAAAGATACCAATCCCCAAGGATCAAAAATGGGAAGAACATTGCAAGTCATTACCTGTTGTTTAGTGTTGGTATTTATGTTTTCATCCCTTTCAACTTATTCTTTACCTTTATCAACTCGAAGAAGATGGATCATTGATTCTAAAACAGGACGTCGAGTGAAGCTAGTATGTGTGAATTGGCCTTCCCATACCCAAAGCATGTTGGTAAAAGGCCTAAACCATCGGCCATTAAAAGAACTTGCTGACGAGGCAATCAAGTTGAAGTTCAATTGTGTGCGTCTCACATATGCAACCCACATGTTCACTCGCTATGCCAATAGGACAATTGAAGAGAACTTTGACCTTCTAGATTTGAAACAAGCCAAAGCTGGATTGGCTCAATATAACCCTTTTGTGTTGAACAAGACCATCGTTGAAGCCTATGAAGCTGTTGTTGATGTGCTTGGGGCAAGTGGTTTGATGGTGATTGTTGACAATCACATTAGCCAACCAAGATGGTGTTGTTCTCTTGATGATGGCAATGGATTCTTTGGAAACCGCAATTTTGACCCTCAAGAATGGTTGCAAGGTTTGAGCTTAGTCGCTCAGCATTTTATCAACAAATCAACGGTGATAGCAATGAGCCTACGAAATGAGATACGGGGGACAATGGAAAATGCAAATGATTGGAACAACTATGTAACTCAAGGAGTAACAACAATCCACAACATAAACCCGAATGTTTTAGTGATTGTTTCAGGCCTAAATTATGACAACGATCTTCAATGCTTAAAGGAAAAGCCCTTGACCGTAAACACTTTAGACAATAAGTTGGTTTTGAGGCACACTTGTATTCTTTTAGTGGAGATGAGAGTAGGACCAAATCCATTTCCTTTGTTTGTTAGCGAATATGGGTACGATCAAAGGGGGACAAACGATGCTGAAAATAGGTACATGAGTTGCTTCACAGCTCATCTTGCTAAAAAGGACATGGATTGGGCACTTTGGACTTGGCAGGGCAGCTATTATTATAGGGAAGGCGAAGCAGAGTCTACAGAATATAAAAGGAAGGTTATGCAGCCAAAAGGAGCATTACATGTTACAGCAAGTGCCAAGAAGAATATTCTTATAATGGGTGGCACCAGATTTATTGGTATATTCTTGTCTAGACTTCTTGTCAAAGAGGGTCATCAGGTGACTTTGTTTACAAGAGGAAAAGCACCCGTTACACAACAATTGCCAGGCGAATCCGAAGCAGATTATGCTGATTTTAAATCCAAGATTCTGCATTTGAAGGGAGACAGAAAAGACTTTGATTTTGTGAAATCCAGTCTCTCGGCCGCAGGGTTTGATGTAGTTTACGATATAAATGGGCGAGAAGCCGTTGAAGTTGAACCAATTTTGGATGCTTTGCCTAAGCTAGAGCAGTTTATATACTGCTCTTCAGCTGGTGTCTACCTCAAGTCTGATCTCCTACCTCATTTTGAGGTAGACGCAGTTGATCCAAAGAGTAGACATAAGGGAAAGCTTGAGACAGAGAGCTTACTGGCATCGAAGGACGTTAATTGGACTTCTATAAGACCAGTCTACATCTATGGTCCATTGAACTACAACCCTGTAGAAGAATGGTTCTTCCACCGGTTGAAAGCGGGTCGCCCCATTCCAATCCCCAACTCAGGCATTCAAATTACACAACTTGGTCACGTCAAGGATTTGGCAAAGGCTTTTATTCAGGTTCTTGGTAATGACAAGGCAAGCCAGCAAGTATTCAATATCTCTGGTGAAAAATATGTTACATTTGATGGGTTAGCCAAAGCTTGTGCTAAGGCTGGAGGCTTTCCCGAGCCCGAGATTGTCCACTATAACCCGAAGGAGTTTGACTTTGGAAAGAAGAAGCCATTCCCTTTCCGTGATCAGCATTTCTTTGCATCGGTTGAGAAAGCGAAGAGCGTGCTCGGGTGGAAGCCCGAATTTGATTTGGTGGAAGGTCTTGCAGACTCCTACAACTTGGACTTTGGCAGAGGCACTTTCAGAAAAGAGGCTGATTTCTCAACAGATGACATAATCCTTGGCAAGAGCTTGGTTCTTCAAGCTTGA

Coding sequence (CDS)

ATGACATTAGAAAGACGAACAAAAGATACCAATCCCCAAGGATCAAAAATGGGAAGAACATTGCAAGTCATTACCTGTTGTTTAGTGTTGGTATTTATGTTTTCATCCCTTTCAACTTATTCTTTACCTTTATCAACTCGAAGAAGATGGATCATTGATTCTAAAACAGGACGTCGAGTGAAGCTAGTATGTGTGAATTGGCCTTCCCATACCCAAAGCATGTTGGTAAAAGGCCTAAACCATCGGCCATTAAAAGAACTTGCTGACGAGGCAATCAAGTTGAAGTTCAATTGTGTGCGTCTCACATATGCAACCCACATGTTCACTCGCTATGCCAATAGGACAATTGAAGAGAACTTTGACCTTCTAGATTTGAAACAAGCCAAAGCTGGATTGGCTCAATATAACCCTTTTGTGTTGAACAAGACCATCGTTGAAGCCTATGAAGCTGTTGTTGATGTGCTTGGGGCAAGTGGTTTGATGGTGATTGTTGACAATCACATTAGCCAACCAAGATGGTGTTGTTCTCTTGATGATGGCAATGGATTCTTTGGAAACCGCAATTTTGACCCTCAAGAATGGTTGCAAGGTTTGAGCTTAGTCGCTCAGCATTTTATCAACAAATCAACGGTGATAGCAATGAGCCTACGAAATGAGATACGGGGGACAATGGAAAATGCAAATGATTGGAACAACTATGTAACTCAAGGAGTAACAACAATCCACAACATAAACCCGAATGTTTTAGTGATTGTTTCAGGCCTAAATTATGACAACGATCTTCAATGCTTAAAGGAAAAGCCCTTGACCGTAAACACTTTAGACAATAAGTTGGTTTTGAGGCACACTTGTATTCTTTTAGTGGAGATGAGAGTAGGACCAAATCCATTTCCTTTGTTTGTTAGCGAATATGGGTACGATCAAAGGGGGACAAACGATGCTGAAAATAGGTACATGAGTTGCTTCACAGCTCATCTTGCTAAAAAGGACATGGATTGGGCACTTTGGACTTGGCAGGGCAGCTATTATTATAGGGAAGGCGAAGCAGAGTCTACAGAATATAAAAGGAAGGTTATGCAGCCAAAAGGAGCATTACATGTTACAGCAAGTGCCAAGAAGAATATTCTTATAATGGGTGGCACCAGATTTATTGGTATATTCTTGTCTAGACTTCTTGTCAAAGAGGGTCATCAGGTGACTTTGTTTACAAGAGGAAAAGCACCCGTTACACAACAATTGCCAGGCGAATCCGAAGCAGATTATGCTGATTTTAAATCCAAGATTCTGCATTTGAAGGGAGACAGAAAAGACTTTGATTTTGTGAAATCCAGTCTCTCGGCCGCAGGGTTTGATGTAGTTTACGATATAAATGGGCGAGAAGCCGTTGAAGTTGAACCAATTTTGGATGCTTTGCCTAAGCTAGAGCAGTTTATATACTGCTCTTCAGCTGGTGTCTACCTCAAGTCTGATCTCCTACCTCATTTTGAGGTAGACGCAGTTGATCCAAAGAGTAGACATAAGGGAAAGCTTGAGACAGAGAGCTTACTGGCATCGAAGGACGTTAATTGGACTTCTATAAGACCAGTCTACATCTATGGTCCATTGAACTACAACCCTGTAGAAGAATGGTTCTTCCACCGGTTGAAAGCGGGTCGCCCCATTCCAATCCCCAACTCAGGCATTCAAATTACACAACTTGGTCACGTCAAGGATTTGGCAAAGGCTTTTATTCAGGTTCTTGGTAATGACAAGGCAAGCCAGCAAGTATTCAATATCTCTGGTGAAAAATATGTTACATTTGATGGGTTAGCCAAAGCTTGTGCTAAGGCTGGAGGCTTTCCCGAGCCCGAGATTGTCCACTATAACCCGAAGGAGTTTGACTTTGGAAAGAAGAAGCCATTCCCTTTCCGTGATCAGCATTTCTTTGCATCGGTTGAGAAAGCGAAGAGCGTGCTCGGGTGGAAGCCCGAATTTGATTTGGTGGAAGGTCTTGCAGACTCCTACAACTTGGACTTTGGCAGAGGCACTTTCAGAAAAGAGGCTGATTTCTCAACAGATGACATAATCCTTGGCAAGAGCTTGGTTCTTCAAGCTTGA

Protein sequence

MTLERRTKDTNPQGSKMGRTLQVITCCLVLVFMFSSLSTYSLPLSTRRRWIIDSKTGRRVKLVCVNWPSHTQSMLVKGLNHRPLKELADEAIKLKFNCVRLTYATHMFTRYANRTIEENFDLLDLKQAKAGLAQYNPFVLNKTIVEAYEAVVDVLGASGLMVIVDNHISQPRWCCSLDDGNGFFGNRNFDPQEWLQGLSLVAQHFINKSTVIAMSLRNEIRGTMENANDWNNYVTQGVTTIHNINPNVLVIVSGLNYDNDLQCLKEKPLTVNTLDNKLVLRHTCILLVEMRVGPNPFPLFVSEYGYDQRGTNDAENRYMSCFTAHLAKKDMDWALWTWQGSYYYREGEAESTEYKRKVMQPKGALHVTASAKKNILIMGGTRFIGIFLSRLLVKEGHQVTLFTRGKAPVTQQLPGESEADYADFKSKILHLKGDRKDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHFEVDAVDPKSRHKGKLETESLLASKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPNSGIQITQLGHVKDLAKAFIQVLGNDKASQQVFNISGEKYVTFDGLAKACAKAGGFPEPEIVHYNPKEFDFGKKKPFPFRDQHFFASVEKAKSVLGWKPEFDLVEGLADSYNLDFGRGTFRKEADFSTDDIILGKSLVLQA

Homology

[Close]

BLAST of HG10021643 vs. NCBI nr
Match: KAA0034926.1 (chloroplast stem-loop binding protein of 41 kDa b [Cucumis melo var. makuwa])

HSP 1 Score: 703.0 bits (1813), Expect = 2.6e-198
Identity = 342/346 (98.84%), Postives = 344/346 (99.42%), Query Frame = 0


Query: 353 EYKRKVMQPKGALHVTASAKKNILIMGGTRFIGIFLSRLLVKEGHQVTLFTRGKAPVTQQ 412
           +YKRKVMQPKG LHVTASAKKNILIMGGTRFIGIFLSRLLVKEGHQVTLFTRGKAPVTQQ
Sbjct: 36  QYKRKVMQPKGGLHVTASAKKNILIMGGTRFIGIFLSRLLVKEGHQVTLFTRGKAPVTQQ 95

Query: 413 LPGESEADYADFKSKILHLKGDRKDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALP 472
           LPGESEADYADFKSKILHLKGDRKDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALP
Sbjct: 96  LPGESEADYADFKSKILHLKGDRKDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALP 155

Query: 473 KLEQFIYCSSAGVYLKSDLLPHFEVDAVDPKSRHKGKLETESLLASKDVNWTSIRPVYIY 532
           KLEQFIYCSSAGVYLKSDLLPHFEVDAVDPKSRHKGKLETESLLASKDVNWTSIRPVYIY
Sbjct: 156 KLEQFIYCSSAGVYLKSDLLPHFEVDAVDPKSRHKGKLETESLLASKDVNWTSIRPVYIY 215

Query: 533 GPLNYNPVEEWFFHRLKAGRPIPIPNSGIQITQLGHVKDLAKAFIQVLGNDKASQQVFNI 592
           GPLNYNPVEEWFFHRLKAGRPIPIPNSGIQITQLGHVKDLA AF+QVLGNDKASQQVFNI
Sbjct: 216 GPLNYNPVEEWFFHRLKAGRPIPIPNSGIQITQLGHVKDLATAFVQVLGNDKASQQVFNI 275

Query: 593 SGEKYVTFDGLAKACAKAGGFPEPEIVHYNPKEFDFGKKKPFPFRDQHFFASVEKAKSVL 652
           SGEKYVTFDGLAKACAKAGGFPEPEIVHYNPKEFDFGKKKPFPFRDQHFFASVEKAKSVL
Sbjct: 276 SGEKYVTFDGLAKACAKAGGFPEPEIVHYNPKEFDFGKKKPFPFRDQHFFASVEKAKSVL 335

Query: 653 GWKPEFDLVEGLADSYNLDFGRGTFRKEADFSTDDIILGKSLVLQA 699
           GWKPEFDLVEGLADSYNLDFGRGTFRKEADFSTDDIILGKSLVLQA
Sbjct: 336 GWKPEFDLVEGLADSYNLDFGRGTFRKEADFSTDDIILGKSLVLQA 381

[Close]

BLAST of HG10021643 vs. NCBI nr
Match: XP_008442117.1 (PREDICTED: chloroplast stem-loop binding protein of 41 kDa b, chloroplastic [Cucumis melo] >TYK05467.1 chloroplast stem-loop binding protein of 41 kDa b [Cucumis melo var. makuwa])

HSP 1 Score: 703.0 bits (1813), Expect = 2.6e-198
Identity = 342/346 (98.84%), Postives = 344/346 (99.42%), Query Frame = 0


Query: 353 EYKRKVMQPKGALHVTASAKKNILIMGGTRFIGIFLSRLLVKEGHQVTLFTRGKAPVTQQ 412
           +YKRKVMQPKG LHVTASAKKNILIMGGTRFIGIFLSRLLVKEGHQVTLFTRGKAPVTQQ
Sbjct: 38  QYKRKVMQPKGGLHVTASAKKNILIMGGTRFIGIFLSRLLVKEGHQVTLFTRGKAPVTQQ 97

Query: 413 LPGESEADYADFKSKILHLKGDRKDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALP 472
           LPGESEADYADFKSKILHLKGDRKDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALP
Sbjct: 98  LPGESEADYADFKSKILHLKGDRKDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALP 157

Query: 473 KLEQFIYCSSAGVYLKSDLLPHFEVDAVDPKSRHKGKLETESLLASKDVNWTSIRPVYIY 532
           KLEQFIYCSSAGVYLKSDLLPHFEVDAVDPKSRHKGKLETESLLASKDVNWTSIRPVYIY
Sbjct: 158 KLEQFIYCSSAGVYLKSDLLPHFEVDAVDPKSRHKGKLETESLLASKDVNWTSIRPVYIY 217

Query: 533 GPLNYNPVEEWFFHRLKAGRPIPIPNSGIQITQLGHVKDLAKAFIQVLGNDKASQQVFNI 592
           GPLNYNPVEEWFFHRLKAGRPIPIPNSGIQITQLGHVKDLA AF+QVLGNDKASQQVFNI
Sbjct: 218 GPLNYNPVEEWFFHRLKAGRPIPIPNSGIQITQLGHVKDLATAFVQVLGNDKASQQVFNI 277

Query: 593 SGEKYVTFDGLAKACAKAGGFPEPEIVHYNPKEFDFGKKKPFPFRDQHFFASVEKAKSVL 652
           SGEKYVTFDGLAKACAKAGGFPEPEIVHYNPKEFDFGKKKPFPFRDQHFFASVEKAKSVL
Sbjct: 278 SGEKYVTFDGLAKACAKAGGFPEPEIVHYNPKEFDFGKKKPFPFRDQHFFASVEKAKSVL 337

Query: 653 GWKPEFDLVEGLADSYNLDFGRGTFRKEADFSTDDIILGKSLVLQA 699
           GWKPEFDLVEGLADSYNLDFGRGTFRKEADFSTDDIILGKSLVLQA
Sbjct: 338 GWKPEFDLVEGLADSYNLDFGRGTFRKEADFSTDDIILGKSLVLQA 383

[Close]

BLAST of HG10021643 vs. NCBI nr
Match: XP_038883846.1 (chloroplast stem-loop binding protein of 41 kDa b, chloroplastic [Benincasa hispida])

HSP 1 Score: 701.8 bits (1810), Expect = 5.8e-198
Identity = 341/346 (98.55%), Postives = 344/346 (99.42%), Query Frame = 0


Query: 353 EYKRKVMQPKGALHVTASAKKNILIMGGTRFIGIFLSRLLVKEGHQVTLFTRGKAPVTQQ 412
           +YKRKVMQPKGALHVTASAKKNILIMGGTRFIGIFLSRLLVKEGHQVTLFTRGKAPVTQQ
Sbjct: 35  QYKRKVMQPKGALHVTASAKKNILIMGGTRFIGIFLSRLLVKEGHQVTLFTRGKAPVTQQ 94

Query: 413 LPGESEADYADFKSKILHLKGDRKDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALP 472
           LPGESEADYADFKSKILHLKGDRKDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALP
Sbjct: 95  LPGESEADYADFKSKILHLKGDRKDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALP 154

Query: 473 KLEQFIYCSSAGVYLKSDLLPHFEVDAVDPKSRHKGKLETESLLASKDVNWTSIRPVYIY 532
           KLEQFIYCSSAGVYLKSDLLPHFEVDAVDPKSRHKGKLETESLLASK VNWTSIRPVYIY
Sbjct: 155 KLEQFIYCSSAGVYLKSDLLPHFEVDAVDPKSRHKGKLETESLLASKGVNWTSIRPVYIY 214

Query: 533 GPLNYNPVEEWFFHRLKAGRPIPIPNSGIQITQLGHVKDLAKAFIQVLGNDKASQQVFNI 592
           GPLNYNPVEEWFFHRLKAGRPIPIPNSGIQITQLGHVKDLA AF+QVLGNDKASQQVFNI
Sbjct: 215 GPLNYNPVEEWFFHRLKAGRPIPIPNSGIQITQLGHVKDLANAFVQVLGNDKASQQVFNI 274

Query: 593 SGEKYVTFDGLAKACAKAGGFPEPEIVHYNPKEFDFGKKKPFPFRDQHFFASVEKAKSVL 652
           SGEKYVTFDGLAKACAKAGGFPEPEIVHYNPKEFDFGKKKPFPFRDQHFFAS+EKAKSVL
Sbjct: 275 SGEKYVTFDGLAKACAKAGGFPEPEIVHYNPKEFDFGKKKPFPFRDQHFFASIEKAKSVL 334

Query: 653 GWKPEFDLVEGLADSYNLDFGRGTFRKEADFSTDDIILGKSLVLQA 699
           GWKPEFDLVEGLADSYNLDFGRGTFRKEADFSTDDIILGKSLVLQA
Sbjct: 335 GWKPEFDLVEGLADSYNLDFGRGTFRKEADFSTDDIILGKSLVLQA 380

[Close]

BLAST of HG10021643 vs. NCBI nr
Match: XP_022961476.1 (chloroplast stem-loop binding protein of 41 kDa b, chloroplastic [Cucurbita moschata] >KAG6590501.1 Chloroplast stem-loop binding protein of 41 kDa b, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 699.5 bits (1804), Expect = 2.9e-197
Identity = 338/346 (97.69%), Postives = 344/346 (99.42%), Query Frame = 0


Query: 353 EYKRKVMQPKGALHVTASAKKNILIMGGTRFIGIFLSRLLVKEGHQVTLFTRGKAPVTQQ 412
           +YKRKVMQPKGALHVTASAKKNIL+MGGTRFIGIFLSRLLVKEGHQVTLFTRGKAPVTQQ
Sbjct: 38  QYKRKVMQPKGALHVTASAKKNILVMGGTRFIGIFLSRLLVKEGHQVTLFTRGKAPVTQQ 97

Query: 413 LPGESEADYADFKSKILHLKGDRKDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALP 472
           LPGES+ADYADFKSK+LHLKGDRKDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALP
Sbjct: 98  LPGESDADYADFKSKVLHLKGDRKDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALP 157

Query: 473 KLEQFIYCSSAGVYLKSDLLPHFEVDAVDPKSRHKGKLETESLLASKDVNWTSIRPVYIY 532
           KLEQFIYCSSAGVYLKSDLLPHFEVDAVDPKSRHKGKLETESLLASKDVNWTSIRPVYIY
Sbjct: 158 KLEQFIYCSSAGVYLKSDLLPHFEVDAVDPKSRHKGKLETESLLASKDVNWTSIRPVYIY 217

Query: 533 GPLNYNPVEEWFFHRLKAGRPIPIPNSGIQITQLGHVKDLAKAFIQVLGNDKASQQVFNI 592
           GPLNYNPVEEWFFHRLKAGRPIPIPNSGIQITQLGHVKDLA AF+QVLGN+KASQQVFNI
Sbjct: 218 GPLNYNPVEEWFFHRLKAGRPIPIPNSGIQITQLGHVKDLATAFVQVLGNEKASQQVFNI 277

Query: 593 SGEKYVTFDGLAKACAKAGGFPEPEIVHYNPKEFDFGKKKPFPFRDQHFFASVEKAKSVL 652
           SGEKYVTFDGLAKACAKAGGFPEPEIVHYNPKEFDFGKKKPFPFRDQHFFASVEKAKSVL
Sbjct: 278 SGEKYVTFDGLAKACAKAGGFPEPEIVHYNPKEFDFGKKKPFPFRDQHFFASVEKAKSVL 337

Query: 653 GWKPEFDLVEGLADSYNLDFGRGTFRKEADFSTDDIILGKSLVLQA 699
           GWKPEFDLVEGL DSYNLDFGRGTFRKEADFSTDDIILGKSLVLQA
Sbjct: 338 GWKPEFDLVEGLTDSYNLDFGRGTFRKEADFSTDDIILGKSLVLQA 383

[Close]

BLAST of HG10021643 vs. NCBI nr
Match: XP_004146391.1 (chloroplast stem-loop binding protein of 41 kDa b, chloroplastic [Cucumis sativus])

HSP 1 Score: 698.0 bits (1800), Expect = 8.4e-197
Identity = 338/346 (97.69%), Postives = 343/346 (99.13%), Query Frame = 0


Query: 353 EYKRKVMQPKGALHVTASAKKNILIMGGTRFIGIFLSRLLVKEGHQVTLFTRGKAPVTQQ 412
           +YKRKVMQPKG LHVTASAKKNILIMGGTRFIGIFLSRLLVKEGHQVTLFTRGKAPVTQQ
Sbjct: 38  QYKRKVMQPKGGLHVTASAKKNILIMGGTRFIGIFLSRLLVKEGHQVTLFTRGKAPVTQQ 97

Query: 413 LPGESEADYADFKSKILHLKGDRKDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALP 472
           LPGESEADYADFKSKILHLKGDRKDFDFVKSSLSAAGFDVVYDINGREA EVEPI+DALP
Sbjct: 98  LPGESEADYADFKSKILHLKGDRKDFDFVKSSLSAAGFDVVYDINGREADEVEPIIDALP 157

Query: 473 KLEQFIYCSSAGVYLKSDLLPHFEVDAVDPKSRHKGKLETESLLASKDVNWTSIRPVYIY 532
           KLEQFIYCSSAGVYLKSDLLPHFEVDAVDPKSRHKGKLETESLLASKDVNWTSIRPVYIY
Sbjct: 158 KLEQFIYCSSAGVYLKSDLLPHFEVDAVDPKSRHKGKLETESLLASKDVNWTSIRPVYIY 217

Query: 533 GPLNYNPVEEWFFHRLKAGRPIPIPNSGIQITQLGHVKDLAKAFIQVLGNDKASQQVFNI 592
           GPLNYNPVEEWFFHRLKAGRPIPIPNSGIQITQLGHVKDLA AF+QVLGNDKASQQVFNI
Sbjct: 218 GPLNYNPVEEWFFHRLKAGRPIPIPNSGIQITQLGHVKDLANAFVQVLGNDKASQQVFNI 277

Query: 593 SGEKYVTFDGLAKACAKAGGFPEPEIVHYNPKEFDFGKKKPFPFRDQHFFASVEKAKSVL 652
           SGEKYV+FDGLAKACAKAGGFPEPEIVHYNPKEFDFGKKKPFPFRDQHFFAS+EKAKSVL
Sbjct: 278 SGEKYVSFDGLAKACAKAGGFPEPEIVHYNPKEFDFGKKKPFPFRDQHFFASIEKAKSVL 337

Query: 653 GWKPEFDLVEGLADSYNLDFGRGTFRKEADFSTDDIILGKSLVLQA 699
           GWKPEFDLVEGLADSYNLDFGRGTFRKEADFSTDDIILGKSLVLQA
Sbjct: 338 GWKPEFDLVEGLADSYNLDFGRGTFRKEADFSTDDIILGKSLVLQA 383

[Close]

BLAST of HG10021643 vs. ExPASy Swiss-Prot
Match: Q9SA52 (Chloroplast stem-loop binding protein of 41 kDa b, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CSP41B PE=1 SV=1)

HSP 1 Score: 637.9 bits (1644), Expect = 1.4e-181
Identity = 302/345 (87.54%), Postives = 327/345 (94.78%), Query Frame = 0


Query: 353 EYKRKVMQPKGALHVTASAKKNILIMGGTRFIGIFLSRLLVKEGHQVTLFTRGKAPVTQQ 412
           +YKRKV QPKGAL+V+AS++K ILIMGGTRFIG+FLSR+LVKEGHQVTLFTRGK+P+ +Q
Sbjct: 34  QYKRKVHQPKGALYVSASSEKKILIMGGTRFIGLFLSRILVKEGHQVTLFTRGKSPIAKQ 93

Query: 413 LPGESEADYADFKSKILHLKGDRKDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALP 472
           LPGES+ D+ADF SKILHLKGDRKD+DFVKSSLSA GFDVVYDINGREA EVEPIL+ALP
Sbjct: 94  LPGESDQDFADFSSKILHLKGDRKDYDFVKSSLSAEGFDVVYDINGREAEEVEPILEALP 153

Query: 473 KLEQFIYCSSAGVYLKSDLLPHFEVDAVDPKSRHKGKLETESLLASKDVNWTSIRPVYIY 532
           KLEQ+IYCSSAGVYLKSD+LPH E DAVDPKSRHKGKLETESLL SK VNWTSIRPVYIY
Sbjct: 154 KLEQYIYCSSAGVYLKSDILPHCEEDAVDPKSRHKGKLETESLLQSKGVNWTSIRPVYIY 213

Query: 533 GPLNYNPVEEWFFHRLKAGRPIPIPNSGIQITQLGHVKDLAKAFIQVLGNDKASQQVFNI 592
           GPLNYNPVEEWFFHRLKAGRPIP+PNSGIQI+QLGHVKDLA AF+ VLGN+KAS+++FNI
Sbjct: 214 GPLNYNPVEEWFFHRLKAGRPIPVPNSGIQISQLGHVKDLATAFLNVLGNEKASREIFNI 273

Query: 593 SGEKYVTFDGLAKACAKAGGFPEPEIVHYNPKEFDFGKKKPFPFRDQHFFASVEKAKSVL 652
           SGEKYVTFDGLAKACAKAGGFPEPEIVHYNPKEFDFGKKK FPFRDQHFFASVEKAK VL
Sbjct: 274 SGEKYVTFDGLAKACAKAGGFPEPEIVHYNPKEFDFGKKKAFPFRDQHFFASVEKAKHVL 333

Query: 653 GWKPEFDLVEGLADSYNLDFGRGTFRKEADFSTDDIILGKSLVLQ 698
           GWKPEFDLVEGL DSYNLDFGRGTFRKEADF+TDD+IL K LVLQ
Sbjct: 334 GWKPEFDLVEGLTDSYNLDFGRGTFRKEADFTTDDMILSKKLVLQ 378

[Close]

BLAST of HG10021643 vs. ExPASy Swiss-Prot
Match: C0HLA0 (Glycosyl hydrolase 5 family protein OS=Chamaecyparis obtusa OX=13415 PE=1 SV=1)

HSP 1 Score: 305.8 bits (782), Expect = 1.2e-81
Identity = 157/362 (43.37%), Postives = 218/362 (60.22%), Query Frame = 0


Query: 21  LQVITCCLVLVFMFSSLSTYSLPLSTRRRWIIDSKTGRRVKLVCVNWPSHTQSMLVKGLN 80
           L+++T  L+L+    +  ++SLPL TR RWI+D  TG RVKL CVNW  H +  L +GLN
Sbjct: 11  LRLLTALLLLLV---AAPSHSLPLLTRGRWIVDEATGLRVKLACVNWVGHLEPGLPEGLN 70

Query: 81  HRPLKELADEAIKLKFNCVRLTYATHMFTR--YANRTIEENFDLLDLKQAKAGLAQYNPF 140
             P+  +A     L FNCVRLTY+ HM TR  Y N T+ + F  L+L +A +G+   NP 
Sbjct: 71  RLPVATVAHTISSLGFNCVRLTYSIHMLTRTSYTNATVAQTFARLNLTEAASGIEHNNPE 130

Query: 141 VLNKTIVEAYEAVVDVLGASGLMVIVDNHISQPRWCCSLDDGNGFFGNRNFDPQEWLQGL 200
           +L+   V AY  VV  L  +G+MVI+DNH+S+P+WCC++DDGNGFFG+R F+P  W++GL
Sbjct: 131 LLDLGHVAAYHHVVAALSEAGVMVILDNHVSKPKWCCAVDDGNGFFGDRYFNPNTWVEGL 190

Query: 201 SLVAQHFINKSTVIAMSLRNEIRGTMENANDWNNYVTQGVTTIHNINPNVLVIVSGLNYD 260
            L+A +F N   V+AMSLRNE+RG       W+ ++  G  T+H  NP VLVI+SGL +D
Sbjct: 191 GLMATYFNNTPNVVAMSLRNELRGNRSTPISWSRHMQWGAATVHKANPKVLVILSGLQFD 250

Query: 261 NDLQCLKEKPLTVNTLDNKLVLRHTCILLVEMRVG-PNPF-------------------- 320
            DL  L   P+T+   +  +   H     V  R G PN                      
Sbjct: 251 TDLSFLPVLPVTLPFKEKIVYEGHWYSFGVPWRTGLPNDVCKNETGRFKSNVGFVTSSAN 310

Query: 321 ----PLFVSEYGYDQRGTNDAENRYMSCFTAHLAKKDMDWALWTWQGSYYYREGEAESTE 356
               PLF+SE+G DQR  ND +NRY++C  A+LA++D+DWALWT  GSYYYR  +    +
Sbjct: 311 ATAAPLFMSEFGIDQRYVNDNDNRYLNCILAYLAEEDLDWALWTMGGSYYYRSDKQPVKD 369

[Close]

BLAST of HG10021643 vs. ExPASy Swiss-Prot
Match: Q9LYA9 (Chloroplast stem-loop binding protein of 41 kDa a, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CSP41A PE=1 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 3.6e-49
Identity = 119/328 (36.28%), Postives = 173/328 (52.74%), Query Frame = 0


Query: 372 KKNILIM----GGTRFIGIFLSRLLVKEGHQVTLFTRG--KAPVTQQLPGESEADYADFK 431
           KKN+LI+    GG   IG + ++ L+  GH VT+ T G   +   ++ P    ++     
Sbjct: 79  KKNVLIVNTNSGGHAVIGFYFAKELLSAGHAVTILTVGDESSEKMKKPPFNRFSEIVSGG 138

Query: 432 SKILHLKGDRKDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALPK--LEQFIYCSSA 491
            K +   G+  +   V + +    FDVV D NG++   V P++D      ++QF++ SSA
Sbjct: 139 GKTVW--GNPAN---VANVVGGETFDVVLDNNGKDLDTVRPVVDWAKSSGVKQFLFISSA 198

Query: 492 GVYLKSDLLPHFEVDAVDPKSRHKGKLETESLLASKDVNWTSIRPVYIYGPLNYNPVEEW 551
           G+Y  ++  PH E DAV   + H   +  E  LA    NW S RP Y+ G  N    EEW
Sbjct: 199 GIYKSTEQPPHVEGDAVKADAGH---VVVEKYLAETFGNWASFRPQYMIGSGNNKDCEEW 258

Query: 552 FFHRLKAGRPIPIPNSGIQITQLGHVKDLAKAFIQVLGN-DKASQQVFNISGEKYVTFDG 611
           FF R+   R +PIP SG+Q+T + HV+DL+      + N + AS  +FN   ++ VT DG
Sbjct: 259 FFDRIVRDRAVPIPGSGLQLTNISHVRDLSSMLTSAVANPEAASGNIFNCVSDRAVTLDG 318

Query: 612 LAKACAKAGGFPEPEIVHYNPKEFDFGKKKPFPFRDQHFFASVEKAKSVLGWKPEFDLVE 671
           +AK CA A G    EIVHY+PK      KK F FR+ HF+A    AK +LGW+ + +L E
Sbjct: 319 MAKLCAAAAG-KTVEIVHYDPKAIGVDAKKAFLFRNMHFYAEPRAAKDLLGWESKTNLPE 378

Query: 672 GLADSYNLDFGRGTFRKEADFSTDDIIL 691
            L + +      G  +KE  F  DD IL
Sbjct: 379 DLKERFEEYVKIGRDKKEIKFELDDKIL 397

[Close]

BLAST of HG10021643 vs. ExPASy Swiss-Prot
Match: O06485 (Putative sugar dehydratase/epimerase YfnG OS=Bacillus subtilis (strain 168) OX=224308 GN=yfnG PE=3 SV=2)

HSP 1 Score: 67.8 bits (164), Expect = 5.6e-10
Identity = 67/322 (20.81%), Postives = 127/322 (39.44%), Query Frame = 0


Query: 373 KNILIMGGTRFIGIFLSRLLVKEGHQVTLFTRGKAPVTQQLPGESEADYADFKSKILHLK 432
           KN+ + G T  +G +L + L+++G  VT   R   P +    GE          K+  ++
Sbjct: 7   KNVFVTGCTGLLGSYLVKELIEQGANVTGLVRDHVPQSNLYQGE-------HIKKMNIVR 66

Query: 433 GDRKDFDFVKSSLSAAGFDVVYDINGREAVEVE----------------PILDAL---PK 492
           G  +D   ++ +L     D V+ +  +  V V                  IL+A    P 
Sbjct: 67  GSLEDLAVIERALGEYEIDTVFHLAAQAIVGVANRNPISTFEANILGTWNILEACRKHPL 126

Query: 493 LEQFIYCSSAGVYLKSDLLPHFEVDAVDPKSRHKGKLETESLLA-------SKDVNWTSI 552
           +++ I  SS   Y   + LP+ E   +  K  +        L++          V  T  
Sbjct: 127 IKRVIVASSDKAYGDQENLPYDENMPLQGKHPYDVSKSCADLISHTYFHTYGLPVCITRC 186

Query: 553 RPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPNSGIQITQLGHVKDLAKAFI---QVLGND 612
             +Y  G LN+N +       +  G    I + G  +    +++D  +A++   + +  +
Sbjct: 187 GNLYGGGDLNFNRIIPQTIQLVLNGEAPEIRSDGTFVRDYFYIEDAVQAYLLLAEKMEEN 246

Query: 613 KASQQVFNISGEKYVT-FDGLAKACAKAGGFPEPEIVHYNPKEFDFGKKKPFPFRDQHFF 665
             + + FN S E  +T  + + K   K     +P++++    E             +H +
Sbjct: 247 NLAGEAFNFSNEIQLTVLELVEKILKKMNSNLKPKVLNQGSNEI------------KHQY 306

[Close]

BLAST of HG10021643 vs. ExPASy Swiss-Prot
Match: Q57664 (Putative UDP-glucose 4-epimerase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) OX=243232 GN=MJ0211 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 5.3e-08
Identity = 74/311 (23.79%), Postives = 129/311 (41.48%), Query Frame = 0


Query: 375 ILIMGGTRFIGIFLSRLLVKEGHQVTLFTRGKAPVTQQLPGESEADYADFKSKILHLKGD 434
           IL+ GG  FIG  +   L++  + V +           +  ++E   AD + K L  K +
Sbjct: 2   ILVTGGAGFIGSHIVDKLIENNYDVIILDNLTTGNKNNINPKAEFVNADIRDKDLDEKIN 61

Query: 435 RKDFDF---------VKSSLSAAGFDVVYDINGREAVEVEPILDALPK--LEQFIYCSSA 494
            KD +          V++S+    +D   DIN    +    IL+ + K  +++ ++ SS 
Sbjct: 62  FKDVEVVIHQAAQINVRNSVENPVYD--GDINVLGTIN---ILEMMRKYDIDKIVFASSG 121

Query: 495 G-VYLKSDLLPHFEVDAVDP-----KSRHKGKLETESLLASKDVNWTSIRPVYIYG---- 554
           G VY + + LP  E   ++P      S++ G+   +       + +  +R   +YG    
Sbjct: 122 GAVYGEPNYLPVDENHPINPLSPYGLSKYVGEEYIKLYNRLYGIEYAILRYSNVYGERQD 181

Query: 555 PLNYNPVEEWFFHRLKAGRPIPIPNSGIQITQLGHVKDLAKAFIQVLGNDKASQQVFNIS 614
           P     V   F  ++   +   I   G Q     +V D+AKA +  L       ++ NI 
Sbjct: 182 PKGEAGVISIFIDKMLKNQSPIIFGDGNQTRDFVYVGDVAKANLMAL---NWKNEIVNIG 241

Query: 615 GEKYVTFDGLAKACAKAGGFPEPEIVHYNPKEFDFGKKKPFPFRDQHFFASVEKAKSVLG 665
             K  + + L        GF   E ++  P+E +              +  ++KA+S LG
Sbjct: 242 TGKETSVNELFDIIKHEIGF-RGEAIYDKPREGEV----------YRIYLDIKKAES-LG 292

[Close]

BLAST of HG10021643 vs. ExPASy TrEMBL
Match: A0A5D3C0Z4 (Chloroplast stem-loop binding protein of 41 kDa b OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold83G001730 PE=3 SV=1)

HSP 1 Score: 703.0 bits (1813), Expect = 1.3e-198
Identity = 342/346 (98.84%), Postives = 344/346 (99.42%), Query Frame = 0


Query: 353 EYKRKVMQPKGALHVTASAKKNILIMGGTRFIGIFLSRLLVKEGHQVTLFTRGKAPVTQQ 412
           +YKRKVMQPKG LHVTASAKKNILIMGGTRFIGIFLSRLLVKEGHQVTLFTRGKAPVTQQ
Sbjct: 38  QYKRKVMQPKGGLHVTASAKKNILIMGGTRFIGIFLSRLLVKEGHQVTLFTRGKAPVTQQ 97

Query: 413 LPGESEADYADFKSKILHLKGDRKDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALP 472
           LPGESEADYADFKSKILHLKGDRKDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALP
Sbjct: 98  LPGESEADYADFKSKILHLKGDRKDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALP 157

Query: 473 KLEQFIYCSSAGVYLKSDLLPHFEVDAVDPKSRHKGKLETESLLASKDVNWTSIRPVYIY 532
           KLEQFIYCSSAGVYLKSDLLPHFEVDAVDPKSRHKGKLETESLLASKDVNWTSIRPVYIY
Sbjct: 158 KLEQFIYCSSAGVYLKSDLLPHFEVDAVDPKSRHKGKLETESLLASKDVNWTSIRPVYIY 217

Query: 533 GPLNYNPVEEWFFHRLKAGRPIPIPNSGIQITQLGHVKDLAKAFIQVLGNDKASQQVFNI 592
           GPLNYNPVEEWFFHRLKAGRPIPIPNSGIQITQLGHVKDLA AF+QVLGNDKASQQVFNI
Sbjct: 218 GPLNYNPVEEWFFHRLKAGRPIPIPNSGIQITQLGHVKDLATAFVQVLGNDKASQQVFNI 277

Query: 593 SGEKYVTFDGLAKACAKAGGFPEPEIVHYNPKEFDFGKKKPFPFRDQHFFASVEKAKSVL 652
           SGEKYVTFDGLAKACAKAGGFPEPEIVHYNPKEFDFGKKKPFPFRDQHFFASVEKAKSVL
Sbjct: 278 SGEKYVTFDGLAKACAKAGGFPEPEIVHYNPKEFDFGKKKPFPFRDQHFFASVEKAKSVL 337

Query: 653 GWKPEFDLVEGLADSYNLDFGRGTFRKEADFSTDDIILGKSLVLQA 699
           GWKPEFDLVEGLADSYNLDFGRGTFRKEADFSTDDIILGKSLVLQA
Sbjct: 338 GWKPEFDLVEGLADSYNLDFGRGTFRKEADFSTDDIILGKSLVLQA 383

[Close]

BLAST of HG10021643 vs. ExPASy TrEMBL
Match: A0A5A7SYF9 (Chloroplast stem-loop binding protein of 41 kDa b OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold103G00580 PE=3 SV=1)

HSP 1 Score: 703.0 bits (1813), Expect = 1.3e-198
Identity = 342/346 (98.84%), Postives = 344/346 (99.42%), Query Frame = 0


Query: 353 EYKRKVMQPKGALHVTASAKKNILIMGGTRFIGIFLSRLLVKEGHQVTLFTRGKAPVTQQ 412
           +YKRKVMQPKG LHVTASAKKNILIMGGTRFIGIFLSRLLVKEGHQVTLFTRGKAPVTQQ
Sbjct: 36  QYKRKVMQPKGGLHVTASAKKNILIMGGTRFIGIFLSRLLVKEGHQVTLFTRGKAPVTQQ 95

Query: 413 LPGESEADYADFKSKILHLKGDRKDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALP 472
           LPGESEADYADFKSKILHLKGDRKDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALP
Sbjct: 96  LPGESEADYADFKSKILHLKGDRKDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALP 155

Query: 473 KLEQFIYCSSAGVYLKSDLLPHFEVDAVDPKSRHKGKLETESLLASKDVNWTSIRPVYIY 532
           KLEQFIYCSSAGVYLKSDLLPHFEVDAVDPKSRHKGKLETESLLASKDVNWTSIRPVYIY
Sbjct: 156 KLEQFIYCSSAGVYLKSDLLPHFEVDAVDPKSRHKGKLETESLLASKDVNWTSIRPVYIY 215

Query: 533 GPLNYNPVEEWFFHRLKAGRPIPIPNSGIQITQLGHVKDLAKAFIQVLGNDKASQQVFNI 592
           GPLNYNPVEEWFFHRLKAGRPIPIPNSGIQITQLGHVKDLA AF+QVLGNDKASQQVFNI
Sbjct: 216 GPLNYNPVEEWFFHRLKAGRPIPIPNSGIQITQLGHVKDLATAFVQVLGNDKASQQVFNI 275

Query: 593 SGEKYVTFDGLAKACAKAGGFPEPEIVHYNPKEFDFGKKKPFPFRDQHFFASVEKAKSVL 652
           SGEKYVTFDGLAKACAKAGGFPEPEIVHYNPKEFDFGKKKPFPFRDQHFFASVEKAKSVL
Sbjct: 276 SGEKYVTFDGLAKACAKAGGFPEPEIVHYNPKEFDFGKKKPFPFRDQHFFASVEKAKSVL 335

Query: 653 GWKPEFDLVEGLADSYNLDFGRGTFRKEADFSTDDIILGKSLVLQA 699
           GWKPEFDLVEGLADSYNLDFGRGTFRKEADFSTDDIILGKSLVLQA
Sbjct: 336 GWKPEFDLVEGLADSYNLDFGRGTFRKEADFSTDDIILGKSLVLQA 381

[Close]

BLAST of HG10021643 vs. ExPASy TrEMBL
Match: A0A1S3B4I6 (chloroplast stem-loop binding protein of 41 kDa b, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103486073 PE=3 SV=1)

HSP 1 Score: 703.0 bits (1813), Expect = 1.3e-198
Identity = 342/346 (98.84%), Postives = 344/346 (99.42%), Query Frame = 0


Query: 353 EYKRKVMQPKGALHVTASAKKNILIMGGTRFIGIFLSRLLVKEGHQVTLFTRGKAPVTQQ 412
           +YKRKVMQPKG LHVTASAKKNILIMGGTRFIGIFLSRLLVKEGHQVTLFTRGKAPVTQQ
Sbjct: 38  QYKRKVMQPKGGLHVTASAKKNILIMGGTRFIGIFLSRLLVKEGHQVTLFTRGKAPVTQQ 97

Query: 413 LPGESEADYADFKSKILHLKGDRKDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALP 472
           LPGESEADYADFKSKILHLKGDRKDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALP
Sbjct: 98  LPGESEADYADFKSKILHLKGDRKDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALP 157

Query: 473 KLEQFIYCSSAGVYLKSDLLPHFEVDAVDPKSRHKGKLETESLLASKDVNWTSIRPVYIY 532
           KLEQFIYCSSAGVYLKSDLLPHFEVDAVDPKSRHKGKLETESLLASKDVNWTSIRPVYIY
Sbjct: 158 KLEQFIYCSSAGVYLKSDLLPHFEVDAVDPKSRHKGKLETESLLASKDVNWTSIRPVYIY 217

Query: 533 GPLNYNPVEEWFFHRLKAGRPIPIPNSGIQITQLGHVKDLAKAFIQVLGNDKASQQVFNI 592
           GPLNYNPVEEWFFHRLKAGRPIPIPNSGIQITQLGHVKDLA AF+QVLGNDKASQQVFNI
Sbjct: 218 GPLNYNPVEEWFFHRLKAGRPIPIPNSGIQITQLGHVKDLATAFVQVLGNDKASQQVFNI 277

Query: 593 SGEKYVTFDGLAKACAKAGGFPEPEIVHYNPKEFDFGKKKPFPFRDQHFFASVEKAKSVL 652
           SGEKYVTFDGLAKACAKAGGFPEPEIVHYNPKEFDFGKKKPFPFRDQHFFASVEKAKSVL
Sbjct: 278 SGEKYVTFDGLAKACAKAGGFPEPEIVHYNPKEFDFGKKKPFPFRDQHFFASVEKAKSVL 337

Query: 653 GWKPEFDLVEGLADSYNLDFGRGTFRKEADFSTDDIILGKSLVLQA 699
           GWKPEFDLVEGLADSYNLDFGRGTFRKEADFSTDDIILGKSLVLQA
Sbjct: 338 GWKPEFDLVEGLADSYNLDFGRGTFRKEADFSTDDIILGKSLVLQA 383

[Close]

BLAST of HG10021643 vs. ExPASy TrEMBL
Match: A0A6J1HAG5 (chloroplast stem-loop binding protein of 41 kDa b, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111462045 PE=3 SV=1)

HSP 1 Score: 699.5 bits (1804), Expect = 1.4e-197
Identity = 338/346 (97.69%), Postives = 344/346 (99.42%), Query Frame = 0


Query: 353 EYKRKVMQPKGALHVTASAKKNILIMGGTRFIGIFLSRLLVKEGHQVTLFTRGKAPVTQQ 412
           +YKRKVMQPKGALHVTASAKKNIL+MGGTRFIGIFLSRLLVKEGHQVTLFTRGKAPVTQQ
Sbjct: 38  QYKRKVMQPKGALHVTASAKKNILVMGGTRFIGIFLSRLLVKEGHQVTLFTRGKAPVTQQ 97

Query: 413 LPGESEADYADFKSKILHLKGDRKDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALP 472
           LPGES+ADYADFKSK+LHLKGDRKDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALP
Sbjct: 98  LPGESDADYADFKSKVLHLKGDRKDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALP 157

Query: 473 KLEQFIYCSSAGVYLKSDLLPHFEVDAVDPKSRHKGKLETESLLASKDVNWTSIRPVYIY 532
           KLEQFIYCSSAGVYLKSDLLPHFEVDAVDPKSRHKGKLETESLLASKDVNWTSIRPVYIY
Sbjct: 158 KLEQFIYCSSAGVYLKSDLLPHFEVDAVDPKSRHKGKLETESLLASKDVNWTSIRPVYIY 217

Query: 533 GPLNYNPVEEWFFHRLKAGRPIPIPNSGIQITQLGHVKDLAKAFIQVLGNDKASQQVFNI 592
           GPLNYNPVEEWFFHRLKAGRPIPIPNSGIQITQLGHVKDLA AF+QVLGN+KASQQVFNI
Sbjct: 218 GPLNYNPVEEWFFHRLKAGRPIPIPNSGIQITQLGHVKDLATAFVQVLGNEKASQQVFNI 277

Query: 593 SGEKYVTFDGLAKACAKAGGFPEPEIVHYNPKEFDFGKKKPFPFRDQHFFASVEKAKSVL 652
           SGEKYVTFDGLAKACAKAGGFPEPEIVHYNPKEFDFGKKKPFPFRDQHFFASVEKAKSVL
Sbjct: 278 SGEKYVTFDGLAKACAKAGGFPEPEIVHYNPKEFDFGKKKPFPFRDQHFFASVEKAKSVL 337

Query: 653 GWKPEFDLVEGLADSYNLDFGRGTFRKEADFSTDDIILGKSLVLQA 699
           GWKPEFDLVEGL DSYNLDFGRGTFRKEADFSTDDIILGKSLVLQA
Sbjct: 338 GWKPEFDLVEGLTDSYNLDFGRGTFRKEADFSTDDIILGKSLVLQA 383

[Close]

BLAST of HG10021643 vs. ExPASy TrEMBL
Match: A0A0A0KZ66 (Epimerase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G500330 PE=3 SV=1)

HSP 1 Score: 698.0 bits (1800), Expect = 4.1e-197
Identity = 338/346 (97.69%), Postives = 343/346 (99.13%), Query Frame = 0


Query: 353 EYKRKVMQPKGALHVTASAKKNILIMGGTRFIGIFLSRLLVKEGHQVTLFTRGKAPVTQQ 412
           +YKRKVMQPKG LHVTASAKKNILIMGGTRFIGIFLSRLLVKEGHQVTLFTRGKAPVTQQ
Sbjct: 38  QYKRKVMQPKGGLHVTASAKKNILIMGGTRFIGIFLSRLLVKEGHQVTLFTRGKAPVTQQ 97

Query: 413 LPGESEADYADFKSKILHLKGDRKDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALP 472
           LPGESEADYADFKSKILHLKGDRKDFDFVKSSLSAAGFDVVYDINGREA EVEPI+DALP
Sbjct: 98  LPGESEADYADFKSKILHLKGDRKDFDFVKSSLSAAGFDVVYDINGREADEVEPIIDALP 157

Query: 473 KLEQFIYCSSAGVYLKSDLLPHFEVDAVDPKSRHKGKLETESLLASKDVNWTSIRPVYIY 532
           KLEQFIYCSSAGVYLKSDLLPHFEVDAVDPKSRHKGKLETESLLASKDVNWTSIRPVYIY
Sbjct: 158 KLEQFIYCSSAGVYLKSDLLPHFEVDAVDPKSRHKGKLETESLLASKDVNWTSIRPVYIY 217

Query: 533 GPLNYNPVEEWFFHRLKAGRPIPIPNSGIQITQLGHVKDLAKAFIQVLGNDKASQQVFNI 592
           GPLNYNPVEEWFFHRLKAGRPIPIPNSGIQITQLGHVKDLA AF+QVLGNDKASQQVFNI
Sbjct: 218 GPLNYNPVEEWFFHRLKAGRPIPIPNSGIQITQLGHVKDLANAFVQVLGNDKASQQVFNI 277

Query: 593 SGEKYVTFDGLAKACAKAGGFPEPEIVHYNPKEFDFGKKKPFPFRDQHFFASVEKAKSVL 652
           SGEKYV+FDGLAKACAKAGGFPEPEIVHYNPKEFDFGKKKPFPFRDQHFFAS+EKAKSVL
Sbjct: 278 SGEKYVSFDGLAKACAKAGGFPEPEIVHYNPKEFDFGKKKPFPFRDQHFFASIEKAKSVL 337

Query: 653 GWKPEFDLVEGLADSYNLDFGRGTFRKEADFSTDDIILGKSLVLQA 699
           GWKPEFDLVEGLADSYNLDFGRGTFRKEADFSTDDIILGKSLVLQA
Sbjct: 338 GWKPEFDLVEGLADSYNLDFGRGTFRKEADFSTDDIILGKSLVLQA 383

[Close]

BLAST of HG10021643 vs. TAIR 10
Match: AT1G09340.1 (chloroplast RNA binding )

HSP 1 Score: 637.9 bits (1644), Expect = 9.7e-183
Identity = 302/345 (87.54%), Postives = 327/345 (94.78%), Query Frame = 0


Query: 353 EYKRKVMQPKGALHVTASAKKNILIMGGTRFIGIFLSRLLVKEGHQVTLFTRGKAPVTQQ 412
           +YKRKV QPKGAL+V+AS++K ILIMGGTRFIG+FLSR+LVKEGHQVTLFTRGK+P+ +Q
Sbjct: 34  QYKRKVHQPKGALYVSASSEKKILIMGGTRFIGLFLSRILVKEGHQVTLFTRGKSPIAKQ 93

Query: 413 LPGESEADYADFKSKILHLKGDRKDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALP 472
           LPGES+ D+ADF SKILHLKGDRKD+DFVKSSLSA GFDVVYDINGREA EVEPIL+ALP
Sbjct: 94  LPGESDQDFADFSSKILHLKGDRKDYDFVKSSLSAEGFDVVYDINGREAEEVEPILEALP 153

Query: 473 KLEQFIYCSSAGVYLKSDLLPHFEVDAVDPKSRHKGKLETESLLASKDVNWTSIRPVYIY 532
           KLEQ+IYCSSAGVYLKSD+LPH E DAVDPKSRHKGKLETESLL SK VNWTSIRPVYIY
Sbjct: 154 KLEQYIYCSSAGVYLKSDILPHCEEDAVDPKSRHKGKLETESLLQSKGVNWTSIRPVYIY 213

Query: 533 GPLNYNPVEEWFFHRLKAGRPIPIPNSGIQITQLGHVKDLAKAFIQVLGNDKASQQVFNI 592
           GPLNYNPVEEWFFHRLKAGRPIP+PNSGIQI+QLGHVKDLA AF+ VLGN+KAS+++FNI
Sbjct: 214 GPLNYNPVEEWFFHRLKAGRPIPVPNSGIQISQLGHVKDLATAFLNVLGNEKASREIFNI 273

Query: 593 SGEKYVTFDGLAKACAKAGGFPEPEIVHYNPKEFDFGKKKPFPFRDQHFFASVEKAKSVL 652
           SGEKYVTFDGLAKACAKAGGFPEPEIVHYNPKEFDFGKKK FPFRDQHFFASVEKAK VL
Sbjct: 274 SGEKYVTFDGLAKACAKAGGFPEPEIVHYNPKEFDFGKKKAFPFRDQHFFASVEKAKHVL 333

Query: 653 GWKPEFDLVEGLADSYNLDFGRGTFRKEADFSTDDIILGKSLVLQ 698
           GWKPEFDLVEGL DSYNLDFGRGTFRKEADF+TDD+IL K LVLQ
Sbjct: 334 GWKPEFDLVEGLTDSYNLDFGRGTFRKEADFTTDDMILSKKLVLQ 378

[Close]

BLAST of HG10021643 vs. TAIR 10
Match: AT3G26130.1 (Cellulase (glycosyl hydrolase family 5) protein )

HSP 1 Score: 287.7 bits (735), Expect = 2.5e-77
Identity = 148/344 (43.02%), Postives = 212/344 (61.63%), Query Frame = 0


Query: 37  LSTYSLPLSTRRRWII-DSKTGRRVKLVCVNWPSHTQSMLVKGLNHRPLKELADEAIKLK 96
           ++T++ P ST  RWI+ D   GRRVKL CVNWPSH ++ + +GL+ +PL  +A++ + + 
Sbjct: 16  ITTFAFPPSTDSRWIVDDGNKGRRVKLTCVNWPSHLETAVAEGLSKQPLDAIAEKIVSMG 75

Query: 97  FNCVRLTYATHMFTR---YANRTIEENFDLLDLKQAKAGLAQYNPFVLNKTIVEAYEAVV 156
           FNCVRLT+  ++ T     A  T+ ++     L +A +G   +NP +L+  +++A++ VV
Sbjct: 76  FNCVRLTWPLYLATDESFSAFMTVRQSLRKFRLFEAVSGFQTHNPTILDLPLIKAFQEVV 135

Query: 157 DVLGASGLMVIVDNHISQPRWCCSLDDGNGFFGNRNFDPQEWLQGLSLVAQHFIN-KSTV 216
             L    +MVI+DNHISQP WCCS +DGNGFFG+++ +PQ W++GL  +A  F N  S V
Sbjct: 136 YCLEKHRVMVILDNHISQPGWCCSDNDGNGFFGDKHLNPQVWIKGLKKMASMFANVSSNV 195

Query: 217 IAMSLRNEIRGTMENANDWNNYVTQGVTTIHNINPNVLVIVSGLNYDNDLQCLKEKPLTV 276
           + MSLRNE+RG  +N  DW  Y+ +G   +H++NPNVLVIVSGLNY  DL  L+E+P  V
Sbjct: 196 VGMSLRNELRGPKQNIKDWYKYMREGAEAVHSVNPNVLVIVSGLNYATDLSFLRERPFEV 255

Query: 277 NTLDNKLV----------------LRHTCILLVEMRVGPNPF------PLFVSEYGYDQR 336
            +   K+V                L   C    E  +  + F      PLFVSE+G DQR
Sbjct: 256 -SFRRKVVFEIHWYGFWNTWEGDNLNKICGKETEKMMKMSGFLLEKGIPLFVSEFGIDQR 315

Query: 337 GTNDAENRYMSCFTAHLAKKDMDWALWTWQGSYYYREGEAESTE 354
           G N  +N+++SCF A  A +D+DW+LWT  GSYY RE    S E
Sbjct: 316 GNNANDNKFLSCFMALAADRDLDWSLWTLAGSYYIREKSIGSDE 358

[Close]

BLAST of HG10021643 vs. TAIR 10
Match: AT3G26140.1 (Cellulase (glycosyl hydrolase family 5) protein )

HSP 1 Score: 279.3 bits (713), Expect = 8.7e-75
Identity = 141/338 (41.72%), Postives = 202/338 (59.76%), Query Frame = 0


Query: 43  PLSTRRRWIIDSKTGRRVKLVCVNWPSHTQSMLVKGLNHRPLKELADEAIKLKFNCVRLT 102
           PLST  RWIID K G+RVKL CVNWPSH Q ++ +GL+ + + +LA + + + FNCVR T
Sbjct: 4   PLSTNSRWIIDEK-GQRVKLACVNWPSHLQPVVAEGLSKQSVDDLAKKIMAMGFNCVRFT 63

Query: 103 YATHMFTRYA---NRTIEENFDLLDLKQAKAGLAQYNPFVLNKTIVEAYEAVVDVLGASG 162
           +   + T      N T+ ++F  L L    +G    NP +++  ++EAY+ VV  LG + 
Sbjct: 64  WPLDLATNETLANNVTVRQSFQSLGLNDDISGFETKNPSMIDLPLIEAYKKVVAKLGNNN 123

Query: 163 LMVIVDNHISQPRWCCSLDDGNGFFGNRNFDPQEWLQGLSLVAQHFINKSTVIAMSLRNE 222
           +MVI+DNH+++P WCC  +DGNGFFG+  FDP  W+ GL+ +A  F   + V+ MSLRNE
Sbjct: 124 VMVILDNHVTKPGWCCGYNDGNGFFGDTFFDPTTWIAGLTKIAMTFKGATNVVGMSLRNE 183

Query: 223 IRGTMENANDWNNYVTQGVTTIHNINPNVLVIVSGLNYDNDLQCLKEKPLTVNTLDNKLV 282
           +RG  +N +DW  Y+ QG   +H  NPNVLVI+SGL+YD DL  ++ + + + T   KLV
Sbjct: 184 LRGPKQNVDDWFKYMQQGAEAVHEANPNVLVILSGLSYDTDLSFVRSRHVNL-TFTRKLV 243

Query: 283 L------------------RHTC---ILLVEMRVGPN--PFPLFVSEYGYDQRGTNDAEN 342
                                 C   +  +E   G N   FP+F+SE+G D RG N  +N
Sbjct: 244 FELHRYSFTNTNTWSSKNPNEACGEILKSIENGGGFNLRDFPVFLSEFGIDLRGKNVNDN 303

Query: 343 RYMSCFTAHLAKKDMDWALWTWQGSYYYREGEAESTEY 355
           RY+ C     A+ D+DW++WT QGSYY REG    +E+
Sbjct: 304 RYIGCILGWAAENDVDWSIWTLQGSYYLREGVVGMSEF 339

[Close]

BLAST of HG10021643 vs. TAIR 10
Match: AT1G13130.1 (Cellulase (glycosyl hydrolase family 5) protein )

HSP 1 Score: 278.5 bits (711), Expect = 1.5e-74
Identity = 140/347 (40.35%), Postives = 204/347 (58.79%), Query Frame = 0


Query: 35  SSLSTYSLPLSTRRRWIIDSKTGRRVKLVCVNWPSHTQSMLVKGLNHRPLKELADEAIKL 94
           +++   S PLST  RWI+D + G RVKLVC NWPSH Q ++ +GL+ +P+  +A + +++
Sbjct: 26  NTVPNMSYPLSTSSRWIVD-ENGLRVKLVCANWPSHLQPVVAEGLSKQPVDAVAKKIVEM 85

Query: 95  KFNCVRLTYATHMFTRYA---NRTIEENFDLLDLKQAKAGLAQYNPFVLNKTIVEAYEAV 154
            FNCVRLT+   + T      N T+ ++F  L L     G    NP +++  ++EAY+ V
Sbjct: 86  GFNCVRLTWPLDLMTNETLANNVTVRQSFQSLGLNDDIVGFQTNNPSIIDLPLIEAYKTV 145

Query: 155 VDVLGASGLMVIVDNHISQPRWCCSLDDGNGFFGNRNFDPQEWLQGLSLVAQHFINKSTV 214
           V  LG + +MVI+DNH+++P WCC+ DDGNGFFG++ FDP  W+  L  +A  F   S V
Sbjct: 146 VTTLGNNDVMVILDNHLTKPGWCCANDDGNGFFGDQFFDPTVWVAALKKMAATFNGVSNV 205

Query: 215 IAMSLRNEIRGTMENANDWNNYVTQGVTTIHNINPNVLVIVSGLNYDNDLQCLKEKPLTV 274
           + MSLRNE+RG  +N NDW  Y+ QG   +H+ N  VLVI+SGL++D DL  ++ +P+ +
Sbjct: 206 VGMSLRNELRGPKQNVNDWFKYMQQGAEAVHSANNKVLVILSGLSFDADLSFVRSRPVKL 265

Query: 275 NTLDNKLVLR-----------------HTCILLVEMRVG-------PNPFPLFVSEYGYD 334
            +   KLV                   +     V  R+G          FPLF+SE+G D
Sbjct: 266 -SFTGKLVFELHWYSFSDGNSWAANNPNDICGRVLNRIGNGGGYLLNQGFPLFLSEFGID 325

Query: 335 QRGTNDAENRYMSCFTAHLAKKDMDWALWTWQGSYYYREGEAESTEY 355
           +RG N  +NRY  C T   A+ D+DW+LW   GSYY R+G+    EY
Sbjct: 326 ERGVNTNDNRYFGCLTGWAAENDVDWSLWALTGSYYLRQGKVGMNEY 370

[Close]

BLAST of HG10021643 vs. TAIR 10
Match: AT5G17500.1 (Glycosyl hydrolase superfamily protein )

HSP 1 Score: 270.0 bits (689), Expect = 5.3e-72
Identity = 146/369 (39.57%), Postives = 214/369 (57.99%), Query Frame = 0


Query: 29  VLVFMFSSLSTYSL----PLSTRRRWIIDSKTGRRVKLVCVNWPSHTQSMLVKGLNHRPL 88
           V +F+F SL + +L    PL T+ RWI+++K G RVKL C NWPSH + ++ +GL+ +P+
Sbjct: 9   VFLFLFLSLISLTLATDYPLFTKSRWIVNNK-GHRVKLACANWPSHLKPVVAEGLSSQPM 68

Query: 89  KELADEAIKLKFNCVRLTYATHMF---TRYANRTIEENFDLLDLKQAKAGLAQYNPFVLN 148
             ++ +   + FNCVRLT+   +    T   N T++++F+   L     G+  +NP+++N
Sbjct: 69  DSISKKIKDMGFNCVRLTWPLELMINDTLAFNVTVKQSFERYGLDHELQGIYTHNPYIVN 128

Query: 149 KTIVEAYEAVVDVLGASGLMVIVDNHISQPRWCCSLDDGNGFFGNRNFDPQEWLQGLSLV 208
             ++  ++AVV  LG   +MVI+DNH + P WCCS DD + FFG+  F+P  W+ GL  +
Sbjct: 129 TPLINVFQAVVYSLGRHDVMVILDNHKTVPGWCCSNDDPDAFFGDPKFNPDLWMLGLKKM 188

Query: 209 AQHFINKSTVIAMSLRNEIRGTMENANDWNNYVTQGVTTIHNINPNVLVIVSGLNYDNDL 268
           A  F+N   V+ MSLRNE+RG    + DW  Y+ +G   +H  NPNVLVI+SGLN+D DL
Sbjct: 189 ATIFMNVKNVVGMSLRNELRGYNHTSKDWYKYMQKGAEAVHTSNPNVLVILSGLNFDADL 248

Query: 269 QCLKEKPLTVNTLDNKLVLR---------------HTC------ILLVEMRVG----PNP 328
             LK++P+ + +   KLVL                H        +   E R G       
Sbjct: 249 SFLKDRPVNL-SFKKKLVLELHWYSFTDGTGQWKSHNVNDFCSQMFSKERRTGGFVLDQG 308

Query: 329 FPLFVSEYGYDQRGTNDAENRYMSCFTAHLAKKDMDWALWTWQGSYYYREGEAESTEYKR 366
           FPLF+SE+G DQRG +   NRYM+C  A  A+KD+DWA+W   G YY+REG       KR
Sbjct: 309 FPLFLSEFGTDQRGGDLEGNRYMNCMLAWAAEKDLDWAVWAVTGVYYFREG-------KR 368

The following BLAST results are available for this feature:

BLAST of HG10021643 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0034926.1	2.6e-198	98.84	chloroplast stem-loop binding protein of 41 kDa b [Cucumis melo var. makuwa]	[more]
XP_008442117.1	2.6e-198	98.84	PREDICTED: chloroplast stem-loop binding protein of 41 kDa b, chloroplastic [Cuc...	[more]
XP_038883846.1	5.8e-198	98.55	chloroplast stem-loop binding protein of 41 kDa b, chloroplastic [Benincasa hisp...	[more]
XP_022961476.1	2.9e-197	97.69	chloroplast stem-loop binding protein of 41 kDa b, chloroplastic [Cucurbita mosc...	[more]
XP_004146391.1	8.4e-197	97.69	chloroplast stem-loop binding protein of 41 kDa b, chloroplastic [Cucumis sativu...	[more]

BLAST of HG10021643 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SA52	1.4e-181	87.54	Chloroplast stem-loop binding protein of 41 kDa b, chloroplastic OS=Arabidopsis ...	[more]
C0HLA0	1.2e-81	43.37	Glycosyl hydrolase 5 family protein OS=Chamaecyparis obtusa OX=13415 PE=1 SV=1	[more]
Q9LYA9	3.6e-49	36.28	Chloroplast stem-loop binding protein of 41 kDa a, chloroplastic OS=Arabidopsis ...	[more]
O06485	5.6e-10	20.81	Putative sugar dehydratase/epimerase YfnG OS=Bacillus subtilis (strain 168) OX=2...	[more]
Q57664	5.3e-08	23.79	Putative UDP-glucose 4-epimerase OS=Methanocaldococcus jannaschii (strain ATCC 4...	[more]

BLAST of HG10021643 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C0Z4	1.3e-198	98.84	Chloroplast stem-loop binding protein of 41 kDa b OS=Cucumis melo var. makuwa OX...	[more]
A0A5A7SYF9	1.3e-198	98.84	Chloroplast stem-loop binding protein of 41 kDa b OS=Cucumis melo var. makuwa OX...	[more]
A0A1S3B4I6	1.3e-198	98.84	chloroplast stem-loop binding protein of 41 kDa b, chloroplastic OS=Cucumis melo...	[more]
A0A6J1HAG5	1.4e-197	97.69	chloroplast stem-loop binding protein of 41 kDa b, chloroplastic OS=Cucurbita mo...	[more]
A0A0A0KZ66	4.1e-197	97.69	Epimerase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G500330 P...	[more]

BLAST of HG10021643 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G09340.1	9.7e-183	87.54	chloroplast RNA binding	[more]
AT3G26130.1	2.5e-77	43.02	Cellulase (glycosyl hydrolase family 5) protein	[more]
AT3G26140.1	8.7e-75	41.72	Cellulase (glycosyl hydrolase family 5) protein	[more]
AT1G13130.1	1.5e-74	40.35	Cellulase (glycosyl hydrolase family 5) protein	[more]
AT5G17500.1	5.3e-72	39.57	Glycosyl hydrolase superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.20.20.80	Glycosidases	coord: 288..362 e-value: 4.1E-8 score: 34.7
None	No IPR available	GENE3D	3.20.20.80	Glycosidases	coord: 43..283 e-value: 1.1E-43 score: 151.7
None	No IPR available	GENE3D	3.40.50.720		coord: 370..670 e-value: 3.3E-41 score: 143.4
None	No IPR available	PANTHER	PTHR31263:SF0	CELLULASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_5G14560)	coord: 22..280
None	No IPR available	PANTHER	PTHR31263:SF0	CELLULASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_5G14560)	coord: 294..353
None	No IPR available	PANTHER	PTHR31263	CELLULASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_5G14560)	coord: 294..353
None	No IPR available	PANTHER	PTHR31263	CELLULASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_5G14560)	coord: 22..280
None	No IPR available	CDD	cd05265	SDR_a1	coord: 373..626 e-value: 1.2652E-93 score: 288.805
IPR001509	NAD-dependent epimerase/dehydratase	PFAM	PF01370	Epimerase	coord: 375..592 e-value: 1.6E-12 score: 47.4
IPR001547	Glycoside hydrolase, family 5	PFAM	PF00150	Cellulase	coord: 80..279 e-value: 2.6E-18 score: 66.5
IPR036291	NAD(P)-binding domain superfamily	SUPERFAMILY	51735	NAD(P)-binding Rossmann-fold domains	coord: 372..666
IPR017853	Glycoside hydrolase superfamily	SUPERFAMILY	51445	(Trans)glycosidases	coord: 43..343

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10021643.1	HG10021643.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006364	rRNA processing
biological_process	GO:0071704	organic substance metabolic process
cellular_component	GO:0005829	cytosol
molecular_function	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003824	catalytic activity