HG10021637 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10021637
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Unknown protein
Location	Chr05: 12946378 .. 12946653 (-)
RNA-Seq Expression	HG10021637
Synteny	HG10021637

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTCGTTGCTTAACTTTGGCGACCACCTCTAACGACTACCTTCGACGGCCAACTCTGGCAATCACCTTCGACGTCCAACTTCGACGACCACCTCCGACTACCAGCTCCAACGACCACTTCCGACAACCAACTCCAACGACCACTTCCGACAGCCAACTTCGGCAACCACCACTTGCGACCAACTTTAGCAACATCCAATCACTGCTGTTGACGACCAACTCTGGCGACCTCCGACGACGGCCATTCCACCAACTCCGACGACCATTATTTTAA

mRNA sequence

ATGCCTCGTTGCTTAACTTTGGCGACCACCTCTAACGACTACCTTCGACGGCCAACTCTGGCAATCACCTTCGACGTCCAACTTCGACGACCACCTCCGACTACCAGCTCCAACGACCACTTCCGACAACCAACTCCAACGACCACTTCCGACAGCCAACTTCGGCAACCACCACTTGCGACCAACTTTAGCAACATCCAATCACTGCTGTTGACGACCAACTCTGGCGACCTCCGACGACGGCCATTCCACCAACTCCGACGACCATTATTTTAA

Coding sequence (CDS)

ATGCCTCGTTGCTTAACTTTGGCGACCACCTCTAACGACTACCTTCGACGGCCAACTCTGGCAATCACCTTCGACGTCCAACTTCGACGACCACCTCCGACTACCAGCTCCAACGACCACTTCCGACAACCAACTCCAACGACCACTTCCGACAGCCAACTTCGGCAACCACCACTTGCGACCAACTTTAGCAACATCCAATCACTGCTGTTGACGACCAACTCTGGCGACCTCCGACGACGGCCATTCCACCAACTCCGACGACCATTATTTTAA

Protein sequence

MPRCLTLATTSNDYLRRPTLAITFDVQLRRPPPTTSSNDHFRQPTPTTTSDSQLRQPPLATNFSNIQSLLLTTNSGDLRRRPFHQLRRPLF

Homology

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BLAST of HG10021637 vs. NCBI nr
Match: WP_217833371.1 (hypothetical protein, partial [Synechococcus sp. PCC 7002])

HSP 1 Score: 72.8 bits (177), Expect = 1.7e-09
Identity = 40/71 (56.34%), Postives = 46/71 (64.79%), Query Frame = 0


Query: 14 YLRRPTLAITFDVQLRRPPPTTSSNDHFRQPTPTTTSDSQLRQPPLATNFSNIQSLLLTT 73
          +LRRPT   TFD QLRR P  T+S ++ R+  P TTSDS L+QPP   N  NIQ  LLT 
Sbjct: 1  HLRRPTFVTTFDGQLRRLPLMTNSCNYLRRSAPATTSDSHLQQPPPIANSDNIQPPLLTG 60

Query: 74 NSGDLRRRPFH 85
          NS DL R P H
Sbjct: 61 NSDDLHRWPLH 71

The following BLAST results are available for this feature:

BLAST of HG10021637 vs. NCBI nr


Match Name	E-value	Identity	Description
WP_217833371.1	1.7e-09	56.34	hypothetical protein, partial [Synechococcus sp. PCC 7002]	[more]

BLAST of HG10021637 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10021637 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10021637 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 25..59
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..59

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10021637.1	HG10021637.1	mRNA