HG10021636 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10021636
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Pectin lyase-like superfamily protein
Location	Chr05: 12927712 .. 12934127 (+)
RNA-Seq Expression	HG10021636
Synteny	HG10021636

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATATAAAGAATCCTTAATGGGGCCTTGGATGCTATACATTAACGAGGAGTCCGATTATTACATTAAGGTATTTTTTGTTCTTAGTGCCATCTACCGGCATAACAGGATAAGAACTAGAGATGTGCTTCACTAATTGGAGTGCATTAGGAATGTCTTCTATGTTTTCTGTAGAGGAAGAATGTAACTGAGGTTTAGATAGCCAACAGAAATGAGGATAGGAATTATATGCAGTGTTTTATTCATATTCATAGCTAGAATTAGTTTTTCTTTCTTTTGTTAAATTACAAGCTTAGCCTCTAAACAATTGGGAGTGTGTCTTATAGCCTATAGGTCAAAAAACTTTTAAGAGTATGTAATAGGTCTTTAAATTTTCAATTTGTGCCTAATAGATTCTTCAACTTTAAAAGTATCTAATAGGCGTCTCCCTCAACTTTCAATTTTGTGTCTAATTAATAGGAATCTAATGTTCCAACTTCCAATTTTTTGTCCAATAGGTCTATAAATTTTTTTAAAAATATATTGAATAGGTTAGGGGTCTATTAAATACAAAATTAAAAGTTTCATGTACCTCTTAAACACAAAAATGAAAGTTTAACAATCTATTAGGCATTTTGAACGTTCAAGACATGTTAGAAACAAAATAGAAAGTTAATCTATTAAATACATTTCAAGTATAGGACTCGTTAAACACAACCATAAGGTCATGGGATGAAACTTGTAATTGAACATTTTTCTTTGACAAATCTTCCTTTCTTATATCCATGGTATTTGGCTCGCTGCAAATCACAATATCAACTCCAGCAAACAGTTCGAAGTTTCTCTGGTTTAGAAATCCACAACATTCCACTCGAAGGCTTAAACCCAACCCTTCAACTAAACTCCCACCCAAAAGTCCAACCCTAATTACAACCAAAGCCGGGCGTTAGGTGCATTCATAGAATCAACCATCTTTCAACTTTCAAGAACCTAATCTACCGAAGTCGGCGTATCCTGTTTCCAAGAAGTTTCAGAAACCAACTCTATATTCAAGGGTCCATTACTCTACACTGCACACTGCTTAAAAGGAACACAGAAAACCCATAAATGGAATCTATGGTAGCACAAACAACAGGACGAAATCAATCAGCAACCTAAATTAACAAACAAAACAAAGCATCTAAGAATCCAGATTCCTTCAATCCCCTCACCTTTCATCCTCATAAACCAACCAATTTTCACCCAGAATCGTGTAGAAGACAACGAAGGTGTAGAATTGCAAAAGAAGAGCAAGAAAGAGGATGATTGCAATGAAAGTAAAGGATAGAAATTGAAGATATTTACTCACGAGAGTTGCAGCTACTGATTGTAAGGTGGTGGAAATATTCGCGTCCGCCGAACTTGAAAATGAAACTGCGATGGTTGTATCGTTGTCATTTCAAGTCCTCTTGAGAAGATTCACAATTTTGGAGGTTTTTTTTTATTATTTTTTTTACGGATAACCCTTTTCAAGCATTTTTATTATTAATAACCCGTCTCCACAAAAATATGAAATCTAACCTTTACCGTTCTATCCGATCACCCAAACACAATAAATTAGGAAAAAAATACAACAAACTCTATCTATCTTATAACGATAACATTAAGGATGACCATGTATAGCCTTTTGATCCATGACGAATTTGATTTGATAATATTTTTAAAAAATATTAATTTACCTTAAATTTTAGAGATTATATTAATTTAAATCATGTAATAAAAAGGAAAATTACTATAAACAGAAAAAATATCAAATTTACAAATATATAAAATTTTTACTATCTATCAGTGATAGACCGCGATAGAATTCTATCGCTTTCTATCGCTCAAGCAAATATTTATTTTATCGCTTGAGCGATAAAAAGCTATAGAATTTTATCGCGGTCTATCACTGATAGACTGTAAAAATTTTCTATATTTGTAAATAGTTTGGTTCATTTTTCTATATTTAAAAATCGTCCTAATAATTATATCAATTCAAATCTTAAATTTGCTAGTTGTATCAAAGACTAAACTTAAATTTGAAAGTTGAAACAATAAACTTGTTGTGTGGAGCCAAATAAAAAGGTTGATTAAGGTGAGCATTGAGTGAGTGAATATTGAACTAAATCACAAACGTTTTTTAAAGTTCAAAACTAAAATAAAATGTTAGAAGGATAAAAATGAGATTATATAATATAAATCTTACCAAAATTTTATTTGAAAATATAAATAATGAACAATGTTTATCATCAATTTAAATATATTTTTTAAAATTTTAACTTTTTTCTAGATATTAAATTTGGTTATATGTGTAAATAAATAATGGATATTTTAAACAATGTTATTTATATGCTAAAATCAAGTCTAACTCAATTGATATATGAGTATATTAATAACTACGAGATATATAATAATTCTCCTACCTTCAATTATTCTTAAAACTTAATAACTCTCTACAAAAATAAAATAAAAATAACCATCGAAACATATGTCAAACATAAATTAAACAATAACTTATCATTTTTTTTTTTTTTAAGGTTCATTTTTGTATTTTTATTTTATTGTGTTTTTAATTGTATGTCCCGTCATCCCCGTGTGTGGTGTTTCCATTTTTGGCGTCAGGTGGAGTTCCCAAATGTAACATAAAATAAATAAATTTTTTTTATTAAGTTCTAAATATGAAATAAAAGAAATAGAAATAGAAATTAGGTTTTAGGTTTTAGGTTGCAATTTTAATTTAAGAAAAAATTAAAAATAGTGCAGTTTTTTTTCACTCTTTAGTGGTTTTTTCTTAAAAAAAAATTTAGTTAACAACATTCTGTAACCATTAATTTACTTTATTGACAAGTAAATTTCAAAATTTTCTATTACTTTTTTAGTTTTTATACTTTTAAATCTATGTAATAATAGAATCGTCAGAAAAATATCCCTAATTCTGAAAGATCTTATTAAGAAATAAATTTTGGAAAACTATATCCTAGTCTAAGAACTAAAATTTCTAATTATAATTGTAATATTCAAGATCAAGTTCGTAAAGCAAATTTACAAAAAGGTCATTATCAGCCTCGAAAACCATACTTTTCCATTTAAAAAATTTAGAACAAAGTCGAGACGATTGAATCCAGCATGGTTTAATAAATATTCAAATTGGTTAGAATACAACATTTCAAATGATGCTGCATTTTGAAGCAATGAATATTGTTTGATAGCATATATTAAAAAAAAAATATTTGATAAGTTAGATAATATAGTTATCATGAATCGATTTTAAAACATGAAAATTTGTAGAAAACAATTATAGTGTTAAATTAGTCAACATGTTAACTAATTTAATGCACTACAATTGTCCTCTACATATGAAGTAATGAATATTATTTTACATTTCTTTATAATTTTTTTTTTTAAAATTACATTCATATGTACGGTGTACTACCTCTATATAAAATTTCTAGATCTGTCATTGTAATCAAATGGAAGGACTATCTTTCTTTCGACTTCATTATTATCATACACAAATATCCATTCTTTTAAAGAATTTATGACAGTATATAAGACACATACAACTTTCTATTTCGAGACATGGATTTTGAAATTTATGGATGTTGAGTAATAATTGATTTATTTTTTTCACAAAAAGAATATCTATTAGTAACGATCAATTTCGAAATTCTTATCTAAAAATAATTTTTCAAAGTAAAAGAAAATTAGTTGCAAACAAACAAGTTGTACATGTCTAAAATAGTTTTCCATGAATTAACTAAAAAAATATTTATTTGATTATGGATTCAATTTAATTTTATTCTCATGCATTAAACATTTAATGAAATAAAAGAAAAGTACAAAAGAGATCACAAAGTTCAATCAAGAAAACCAACAAAAATAAAATTGTTAATAATTTATTTTATAAGGTGTGTAGAATAACTTTTCAAAGGGCTTTCAATCAATATCTATTGATTGATCAATTTCAAACTCAACTTCATAAGATCAATGTTCCATTGACACTAGTTTTATGATTATGCTTATAGGTAAGTTATGGGTGTTATAAATTTTTTAATTTTATAGATTATAATTGGTTCCACTAATTTTGTTCATAAAAAATATTAATAAAGAGTACTTTTCCACTTAAATTCTCATGACATCTATAATAATTAGAGTTGTTTTTAAACACTAAAAAATGAAACAAACTATTTATAAATATAGAAAAATTTTACTGTCTATTGCTTAAGCGATAGAACTCTATCGCGGTCTATCGTTGATAGATAGTGAAATTTTTCTATATTTGTAAATAGTTTGATATTTTTTATATTTATAATAATTTTCTAATAATTAATTATTTCAATTTATCACTTCACAAAAATAATTTTAAACCCAAATCAAGCAAAAGGCACATTACCATTCCATCAAAAAAGAATTTCTTTCTCTACTTTTCTTTTTTAAAATCAATCATAGCCATTGATGATTTTTTTTTTTTTTTAACATTAGTTTTTTTGAAGTTCGAATATTTTTAGTGTAATACAGCTAGAGAATTTGAATTACAAGCATATTGATCACTAAAATTTACTATACTAGCTTTGGTAAAGTTCAGAGTCGTTGATGATAGTTGGTAGGATCATGTGATCAATTCAAACATATGAGCGTTATAACAAAAGTAAAAATATTGCTCTCATCACAAATATTGGAGATATTTCATAGGAAGATTGATGATAGTTGTTTCATGGACTTTCCCATACAGTTATCAGACATTTAATATCTTTTTGTTAATGAATAATGCGTTATTTTTAAATATAGCAAAGTGAGCCAAAGTATTTATAAATATAGTAAAATGTATTGATAGACAGTAATAAACATTGATAGACTATTATTATTTATCACTATCTATCAGTGGTAGACGCTGATAGATGTCTATTAGTGTCTATCACAGTTAAACAATAATATTTTACTATATGTTTTGCCATTTAAAACAATTACTCATGAATAATAATTATGCTAAATATGTTATTTTTCAAACTATATTTCAAAGCTTAATTTAAACTTTAAATTGGTTGAACTTTTTCATAATTTTCCTTACAGTTTTACTTTTGGTTGAACTTTCTCTATATTTATGATGTTATTATATTTTATTCTTTGAAGATTATTCATTTATGGTAAATAGGTTCAAAATGTCACTGAGTTTTGTAAAAGAGGTTAAAAAGATCCATACATATACTTTTTTTTCATTTAGGACAAAATACAATTTTAGGCCTTTCTTTCTCCGAAAATTTTTCTTGAAGTTTGGTGTCAGCGTCTATTTAGTCAGTGAAGTTTCAAAAATTAAATTTGAAAATAGTTATAAATGATCTTCAGTTCACTTGACAACATAATATTAAATTTTTATCGATATGTCGATACTTTCATCGATATTTCCACGTTTCCATGGATTTGATATCAATATGAGGGGTGAATTGATATTTTCATTATATCGTAAAAAAATCCACAAAACACAAAAAATAAGCATCAAAATACCACTAATATAAACATAATATAAATAATAGACATATTTACTTATTTGAAAATTATAAAATGTTTATTTACTAATTTAAATTTATTTTTTTATTTTTTTGTTTCTATAACTTTTCTAAAAATATCCATCGAAATCGATATTTCCATTGAAAATTTATTTTTCATTAAAACTTTATTAATTTTCAATTTTTCATCTCAAATAGAAAAAATTTACCCTTGTTATTTCTACTTCACTACATATGTTGTATTTATTTGAATAATATAGCATTGGGAGTTTAGGAAAAGACGGTGAATATAATGTTGTTGAAAATGTTTATGTGAGCAACTGCCTCTTACAAGGCACACAAAATGGAGTTAGAATCAAGACTTGACAGGTGTAATAATTTTAATTGATTTATATGTAATTTTAATGTCGAATGTTCATTATATAAATAGCTAAAAAATTAATTTTTCTTGACTGTAATTTTTAGGGAGGGTATGGATATGCAAGGAACATCACATTTGAGAAGATAACACTTAAGAATGTGAGAAATCCAATCATTATTGATCAATACTACACGTCTTTTGCATATTCAAGGAAAAATAAGGTATAAAATAATAATGAAAATCAATACCTACATCGATCTTATTACATTTTGTTGATATATGTTTATAATGTCAATTTCGGCGTTAATTTTTTCTTTAACTTTTTTTCAGGGAATAGACATAAAAGTGAGTGATGTGACATATCGTGAAGTTAATGGAACATCAGTAAATGAAGATGCAATTATTTTGAACTGCTCTCAAACTCGTTGCTCAAATATTATATTGAACAACGTGAGCATAAAAACAACTACTCCAAGAAAAGAAGCCAAAACTTTTTGTCAAAATGTTGATGAAAAATCTTTATCAGTTGTCCCAACCGTGCTTCGTTAA

mRNA sequence

ATGAAATATAAAGAATCCTTAATGGGGCCTTGGATGCTATACATTAACGAGGAGTCCGATTATTACATTAAGGGAGGGTATGGATATGCAAGGAACATCACATTTGAGAAGATAACACTTAAGAATGTGAGAAATCCAATCATTATTGATCAATACTACACGTCTTTTGCATATTCAAGGAAAAATAAGGGAATAGACATAAAAGTGAGTGATGTGACATATCGTGAAGTTAATGGAACATCAGTAAATGAAGATGCAATTATTTTGAACTGCTCTCAAACTCGTTGCTCAAATATTATATTGAACAACGTGAGCATAAAAACAACTACTCCAAGAAAAGAAGCCAAAACTTTTTGTCAAAATGTTGATGAAAAATCTTTATCAGTTGTCCCAACCGTGCTTCGTTAA

Coding sequence (CDS)

ATGAAATATAAAGAATCCTTAATGGGGCCTTGGATGCTATACATTAACGAGGAGTCCGATTATTACATTAAGGGAGGGTATGGATATGCAAGGAACATCACATTTGAGAAGATAACACTTAAGAATGTGAGAAATCCAATCATTATTGATCAATACTACACGTCTTTTGCATATTCAAGGAAAAATAAGGGAATAGACATAAAAGTGAGTGATGTGACATATCGTGAAGTTAATGGAACATCAGTAAATGAAGATGCAATTATTTTGAACTGCTCTCAAACTCGTTGCTCAAATATTATATTGAACAACGTGAGCATAAAAACAACTACTCCAAGAAAAGAAGCCAAAACTTTTTGTCAAAATGTTGATGAAAAATCTTTATCAGTTGTCCCAACCGTGCTTCGTTAA

Protein sequence

MKYKESLMGPWMLYINEESDYYIKGGYGYARNITFEKITLKNVRNPIIIDQYYTSFAYSRKNKGIDIKVSDVTYREVNGTSVNEDAIILNCSQTRCSNIILNNVSIKTTTPRKEAKTFCQNVDEKSLSVVPTVLR

Homology

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BLAST of HG10021636 vs. NCBI nr
Match: XP_008454473.1 (PREDICTED: probable polygalacturonase At3g15720 [Cucumis melo])

HSP 1 Score: 174.5 bits (441), Expect = 6.3e-40
Identity = 86/110 (78.18%), Postives = 95/110 (86.36%), Query Frame = 0


Query: 24  KGGYGYARNITFEKITLKNVRNPIIIDQYYTSFAYSRKNKGIDIKVSDVTYREVNGTSVN 83
           +GGYGYA+NITFEKITLKN +NPIIIDQYYTS+AYSRK KG+DIKVSDVTYREVNGTS N
Sbjct: 270 EGGYGYAKNITFEKITLKNSKNPIIIDQYYTSYAYSRKIKGMDIKVSDVTYREVNGTSAN 329

Query: 84  EDAIILNCSQTRCSNIILNNVSIKTTTPRKEAKTFCQNVDEKSLSVVPTV 134
           E+AI  NCSQ RCSNIIL+NV+IK T P +EAK  CQNVD K LS VP V
Sbjct: 330 EEAITFNCSQARCSNIILDNVNIKMTNPGEEAKAVCQNVDGKVLSAVPPV 379

[Close]

BLAST of HG10021636 vs. NCBI nr
Match: KAA0044700.1 (putative polygalacturonase [Cucumis melo var. makuwa] >TYK16887.1 putative polygalacturonase [Cucumis melo var. makuwa])

HSP 1 Score: 174.5 bits (441), Expect = 6.3e-40
Identity = 86/110 (78.18%), Postives = 95/110 (86.36%), Query Frame = 0


Query: 24  KGGYGYARNITFEKITLKNVRNPIIIDQYYTSFAYSRKNKGIDIKVSDVTYREVNGTSVN 83
           +GGYGYA+NITFEKITLKN +NPIIIDQYYTS+AYSRK KG+DIKVSDVTYREVNGTS N
Sbjct: 281 EGGYGYAKNITFEKITLKNSKNPIIIDQYYTSYAYSRKIKGMDIKVSDVTYREVNGTSAN 340

Query: 84  EDAIILNCSQTRCSNIILNNVSIKTTTPRKEAKTFCQNVDEKSLSVVPTV 134
           E+AI  NCSQ RCSNIIL+NV+IK T P +EAK  CQNVD K LS VP V
Sbjct: 341 EEAITFNCSQARCSNIILDNVNIKMTNPGEEAKAVCQNVDGKVLSAVPPV 390

[Close]

BLAST of HG10021636 vs. NCBI nr
Match: XP_038888676.1 (probable polygalacturonase At3g15720 [Benincasa hispida])

HSP 1 Score: 173.3 bits (438), Expect = 1.4e-39
Identity = 86/110 (78.18%), Postives = 95/110 (86.36%), Query Frame = 0


Query: 24  KGGYGYARNITFEKITLKNVRNPIIIDQYYTSFAYSRKNKGIDIKVSDVTYREVNGTSVN 83
           +GGYGYA+NITFEKITLKN +NPIIIDQYYTS+AYSRK KG+DIKVSDVTYREVNGTS N
Sbjct: 281 QGGYGYAKNITFEKITLKNAKNPIIIDQYYTSYAYSRKIKGMDIKVSDVTYREVNGTSAN 340

Query: 84  EDAIILNCSQTRCSNIILNNVSIKTTTPRKEAKTFCQNVDEKSLSVVPTV 134
           EDAI LNCS+ RC+NIIL+NV+IK  T  KEAK  CQNVD K LS VP V
Sbjct: 341 EDAITLNCSRARCTNIILDNVNIKMITLGKEAKAICQNVDGKFLSTVPIV 390

[Close]

BLAST of HG10021636 vs. NCBI nr
Match: KGN53196.1 (hypothetical protein Csa_014667 [Cucumis sativus])

HSP 1 Score: 171.8 bits (434), Expect = 4.1e-39
Identity = 83/110 (75.45%), Postives = 94/110 (85.45%), Query Frame = 0


Query: 24  KGGYGYARNITFEKITLKNVRNPIIIDQYYTSFAYSRKNKGIDIKVSDVTYREVNGTSVN 83
           +GGYGYA+NITFEKIT+KN +NPIIIDQYY+S+AYSRK KG+DIKVSDVTYREVNGTS N
Sbjct: 277 EGGYGYAKNITFEKITMKNAKNPIIIDQYYSSYAYSRKMKGMDIKVSDVTYREVNGTSAN 336

Query: 84  EDAIILNCSQTRCSNIILNNVSIKTTTPRKEAKTFCQNVDEKSLSVVPTV 134
           EDAI  NCSQ RCSNIIL+NV+IK T P ++AK  CQN D K LS VP V
Sbjct: 337 EDAITFNCSQARCSNIILDNVNIKMTNPGEKAKAVCQNADGKVLSAVPPV 386

[Close]

BLAST of HG10021636 vs. NCBI nr
Match: XP_031739967.1 (probable polygalacturonase At3g15720 [Cucumis sativus])

HSP 1 Score: 171.8 bits (434), Expect = 4.1e-39
Identity = 83/110 (75.45%), Postives = 94/110 (85.45%), Query Frame = 0


Query: 24  KGGYGYARNITFEKITLKNVRNPIIIDQYYTSFAYSRKNKGIDIKVSDVTYREVNGTSVN 83
           +GGYGYA+NITFEKIT+KN +NPIIIDQYY+S+AYSRK KG+DIKVSDVTYREVNGTS N
Sbjct: 281 EGGYGYAKNITFEKITMKNAKNPIIIDQYYSSYAYSRKMKGMDIKVSDVTYREVNGTSAN 340

Query: 84  EDAIILNCSQTRCSNIILNNVSIKTTTPRKEAKTFCQNVDEKSLSVVPTV 134
           EDAI  NCSQ RCSNIIL+NV+IK T P ++AK  CQN D K LS VP V
Sbjct: 341 EDAITFNCSQARCSNIILDNVNIKMTNPGEKAKAVCQNADGKVLSAVPPV 390

[Close]

BLAST of HG10021636 vs. ExPASy Swiss-Prot
Match: Q9FY19 (Polygalacturonase OS=Juniperus ashei OX=13101 GN=JNA2 PE=1 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.5e-12
Identity = 38/88 (43.18%), Postives = 59/88 (67.05%), Query Frame = 0


Query: 24  KGGYGYARNITFEKITLKNVRNPIIIDQYYTSFAYSRKNKGIDIKVSDVTYREVNGTSVN 83
           +GG G A +IT+E + + N  NPI+I+Q+Y + A + KN+   +K+ DVT++ ++GTS  
Sbjct: 318 QGGSGLASHITYENVEMINAENPILINQFYCTSAAACKNQRSAVKIQDVTFKNIHGTSAT 377

Query: 84  EDAIILNCSQT-RCSNIILNNVSIKTTT 111
             AI L CS +  CSNI L+NV +K T+
Sbjct: 378 TAAIQLMCSDSVPCSNIKLSNVFLKLTS 405

[Close]

BLAST of HG10021636 vs. ExPASy Swiss-Prot
Match: O22818 (Probable polygalacturonase At2g43860 OS=Arabidopsis thaliana OX=3702 GN=At2g43860 PE=2 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 3.4e-12
Identity = 40/109 (36.70%), Postives = 68/109 (62.39%), Query Frame = 0


Query: 24  KGGYGYARNITFEKITLKNVRNPIIIDQYYTSFAYSRKNKGIDIKVSDVTYREVNGTSVN 83
           K    +ARNI F+ I +K V+NPIIIDQ+Y       K +   +KVS+V Y +++GTS  
Sbjct: 288 KDSNSFARNIVFQHINMKMVKNPIIIDQHYCLHKPCPKQES-GVKVSNVRYEDIHGTSNT 347

Query: 84  EDAIILNCSQTR-CSNIILNNVSIKTTTPRKEAKTFCQNVDEKSLSVVP 132
           E A++L+CS+ + C+ I++++V++   +  + A+  C N +  +  VVP
Sbjct: 348 EVAVLLDCSKEKPCTGIVMDDVNL--VSVHRPAQASCDNANGSANDVVP 393

[Close]

BLAST of HG10021636 vs. ExPASy Swiss-Prot
Match: Q8RY29 (Polygalacturonase ADPG2 OS=Arabidopsis thaliana OX=3702 GN=ADPG2 PE=2 SV=2)

HSP 1 Score: 70.9 bits (172), Expect = 1.3e-11
Identity = 38/85 (44.71%), Postives = 55/85 (64.71%), Query Frame = 0


Query: 24  KGGYGYARNITFEKITLKNVRNPIIIDQYYTSFAYSRKNKGIDIKVSDVTYREVNGTSVN 83
           +GG G A NI F+ I + NV+NPIIIDQ Y   +     K   ++V +V YR+++GTS +
Sbjct: 326 QGGSGTASNIIFQNIQMDNVKNPIIIDQDYCDKSKCTTEKSA-VQVKNVVYRDISGTSAS 385

Query: 84  EDAIILNCSQT-RCSNIILNNVSIK 108
           E+AI  NCS+   C  I+L+ V+IK
Sbjct: 386 ENAITFNCSKNYPCQGIVLDRVNIK 409

[Close]

BLAST of HG10021636 vs. ExPASy Swiss-Prot
Match: P35337 (Polygalacturonase OS=Brassica napus OX=3708 PE=2 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.3e-11
Identity = 40/97 (41.24%), Postives = 55/97 (56.70%), Query Frame = 0


Query: 30  ARNITFEKITLKNVRNPIIIDQYYTSFAYSRKNKGIDIKVSDVTYREVNGTSVNEDAIIL 89
           A  I FE I L  V NPI+IDQ Y  +    KNK   IK+ D+T+R + GTS N+DA+ L
Sbjct: 280 AAGIHFEDIILNKVSNPILIDQEYCPWNQCNKNKPSTIKLVDITFRNIRGTSENKDAVKL 339

Query: 90  NCSQTR-CSNIILNNVSIKTTTPRKEAKTFCQNVDEK 126
            CS+   C N+ + +++I+ T P       C NV  K
Sbjct: 340 LCSKGHPCENVEIGDINIEYTGPDGPPTFECTNVTPK 376

[Close]

BLAST of HG10021636 vs. ExPASy Swiss-Prot
Match: O23147 (Polygalacturonase ADPG1 OS=Arabidopsis thaliana OX=3702 GN=ADPG1 PE=2 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.9e-11
Identity = 45/112 (40.18%), Postives = 64/112 (57.14%), Query Frame = 0


Query: 24  KGGYGYARNITFEKITLKNVRNPIIIDQYYTSFAYSRKNKGID----IKVSDVTYREVNG 83
           +GG G A+NI F+ I ++NV+NPIIIDQ Y       K+K  D    ++V +V Y+ ++G
Sbjct: 326 QGGSGTAKNIKFQNIRMENVKNPIIIDQDYCD-----KDKCEDQESAVQVKNVVYKNISG 385

Query: 84  TSVNEDAIILNCSQT-RCSNIILNNVSIKTTTPRKEAKTFCQNVDEKSLSVV 131
           TS  + AI LNCS+   C  I+L NV IK  T        C+N + K+   V
Sbjct: 386 TSATDVAITLNCSEKYPCQGIVLENVKIKGGT------ASCKNANVKNQGTV 426

[Close]

BLAST of HG10021636 vs. ExPASy TrEMBL
Match: A0A5D3CYS8 (Putative polygalacturonase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G00190 PE=3 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 3.0e-40
Identity = 86/110 (78.18%), Postives = 95/110 (86.36%), Query Frame = 0


Query: 24  KGGYGYARNITFEKITLKNVRNPIIIDQYYTSFAYSRKNKGIDIKVSDVTYREVNGTSVN 83
           +GGYGYA+NITFEKITLKN +NPIIIDQYYTS+AYSRK KG+DIKVSDVTYREVNGTS N
Sbjct: 281 EGGYGYAKNITFEKITLKNSKNPIIIDQYYTSYAYSRKIKGMDIKVSDVTYREVNGTSAN 340

Query: 84  EDAIILNCSQTRCSNIILNNVSIKTTTPRKEAKTFCQNVDEKSLSVVPTV 134
           E+AI  NCSQ RCSNIIL+NV+IK T P +EAK  CQNVD K LS VP V
Sbjct: 341 EEAITFNCSQARCSNIILDNVNIKMTNPGEEAKAVCQNVDGKVLSAVPPV 390

[Close]

BLAST of HG10021636 vs. ExPASy TrEMBL
Match: A0A1S3BYT5 (probable polygalacturonase At3g15720 OS=Cucumis melo OX=3656 GN=LOC103494869 PE=3 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 3.0e-40
Identity = 86/110 (78.18%), Postives = 95/110 (86.36%), Query Frame = 0


Query: 24  KGGYGYARNITFEKITLKNVRNPIIIDQYYTSFAYSRKNKGIDIKVSDVTYREVNGTSVN 83
           +GGYGYA+NITFEKITLKN +NPIIIDQYYTS+AYSRK KG+DIKVSDVTYREVNGTS N
Sbjct: 270 EGGYGYAKNITFEKITLKNSKNPIIIDQYYTSYAYSRKIKGMDIKVSDVTYREVNGTSAN 329

Query: 84  EDAIILNCSQTRCSNIILNNVSIKTTTPRKEAKTFCQNVDEKSLSVVPTV 134
           E+AI  NCSQ RCSNIIL+NV+IK T P +EAK  CQNVD K LS VP V
Sbjct: 330 EEAITFNCSQARCSNIILDNVNIKMTNPGEEAKAVCQNVDGKVLSAVPPV 379

[Close]

BLAST of HG10021636 vs. ExPASy TrEMBL
Match: A0A0A0KZ95 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G025750 PE=3 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 2.0e-39
Identity = 83/110 (75.45%), Postives = 94/110 (85.45%), Query Frame = 0


Query: 24  KGGYGYARNITFEKITLKNVRNPIIIDQYYTSFAYSRKNKGIDIKVSDVTYREVNGTSVN 83
           +GGYGYA+NITFEKIT+KN +NPIIIDQYY+S+AYSRK KG+DIKVSDVTYREVNGTS N
Sbjct: 277 EGGYGYAKNITFEKITMKNAKNPIIIDQYYSSYAYSRKMKGMDIKVSDVTYREVNGTSAN 336

Query: 84  EDAIILNCSQTRCSNIILNNVSIKTTTPRKEAKTFCQNVDEKSLSVVPTV 134
           EDAI  NCSQ RCSNIIL+NV+IK T P ++AK  CQN D K LS VP V
Sbjct: 337 EDAITFNCSQARCSNIILDNVNIKMTNPGEKAKAVCQNADGKVLSAVPPV 386

[Close]

BLAST of HG10021636 vs. ExPASy TrEMBL
Match: A0A6J1IWN4 (probable polygalacturonase At3g15720 OS=Cucurbita maxima OX=3661 GN=LOC111479259 PE=3 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 2.3e-35
Identity = 75/110 (68.18%), Postives = 94/110 (85.45%), Query Frame = 0


Query: 24  KGGYGYARNITFEKITLKNVRNPIIIDQYYTSFAYSRKNKGIDIKVSDVTYREVNGTSVN 83
           +GGYGYA+NITFEKITL+NV+NPIIIDQ+YT++AY RKNKG +IKVSDVTYR+V+GTS N
Sbjct: 281 EGGYGYAKNITFEKITLENVKNPIIIDQHYTAYAYRRKNKGREIKVSDVTYRDVHGTSAN 340

Query: 84  EDAIILNCSQTRCSNIILNNVSIKTTTPRKEAKTFCQNVDEKSLSVVPTV 134
           E AI L+CS+ RC+NII+  V+I T++  +EAK+FCQN D KS S VP V
Sbjct: 341 EKAITLDCSRARCTNIIMEEVNITTSSSNEEAKSFCQNADGKSTSTVPPV 390

[Close]

BLAST of HG10021636 vs. ExPASy TrEMBL
Match: A0A6J1GVS6 (probable polygalacturonase At3g15720 OS=Cucurbita moschata OX=3662 GN=LOC111457994 PE=3 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 2.9e-35
Identity = 75/110 (68.18%), Postives = 94/110 (85.45%), Query Frame = 0


Query: 24  KGGYGYARNITFEKITLKNVRNPIIIDQYYTSFAYSRKNKGIDIKVSDVTYREVNGTSVN 83
           +GGYGYA+NITFEKITL+NV+NPIIIDQ+YT++AY RKNKG +IKVSDVTYR+V+GTS N
Sbjct: 281 EGGYGYAKNITFEKITLENVKNPIIIDQHYTAYAYGRKNKGREIKVSDVTYRDVHGTSAN 340

Query: 84  EDAIILNCSQTRCSNIILNNVSIKTTTPRKEAKTFCQNVDEKSLSVVPTV 134
           E AI L+CS+ RC+NII+  V+I T+T  +EAK+FCQN D +S S VP V
Sbjct: 341 EKAITLDCSRARCTNIIMEEVNITTSTSDEEAKSFCQNADGESTSTVPPV 390

[Close]

BLAST of HG10021636 vs. TAIR 10
Match: AT5G27530.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 84.7 bits (208), Expect = 6.1e-17
Identity = 46/104 (44.23%), Postives = 67/104 (64.42%), Query Frame = 0


Query: 24  KGGYGYARNITFEKITLKNVRNPIIIDQYYTSFAYSRKNKGIDIKVSDVTYREVNGTSVN 83
           +GG GYARNI+FE ITL NV+NPIIIDQ YT        K   + +S V Y    GT++N
Sbjct: 297 QGGQGYARNISFENITLINVQNPIIIDQQYTDKVLLDATKDSAVAISSVKYVGFQGTTLN 356

Query: 84  EDAIILNCSQ-TRCSNIILNNVSIKTTTPRKEAKTFCQNVDEKS 127
           EDAI+L CS  T C +++++++ + T    ++ K  C+NV+ +S
Sbjct: 357 EDAIMLKCSAITYCKDMVIDDIEV-TMENGEKPKVECENVEGES 399

[Close]

BLAST of HG10021636 vs. TAIR 10
Match: AT4G32375.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 75.1 bits (183), Expect = 4.8e-14
Identity = 38/103 (36.89%), Postives = 66/103 (64.08%), Query Frame = 0


Query: 23  IKGGYGYARNITFEKITLKNVRNPIIIDQYYTSFAYS-RKNKGIDIKVSDVTYREVNGTS 82
           ++GG G A+NI +E ITL + + PIIIDQ+Y +  ++  K     +KVS+VT+R   GT 
Sbjct: 243 VRGGLGVAKNILYENITLTDTKYPIIIDQHYCNGGHNCTKEAMTAVKVSNVTFRYFTGTC 302

Query: 83  VNEDAIILNCSQ-TRCSNIILNNVSIKTTTPRKEAKTFCQNVD 124
            N+ AI L+C + T C +I++ +++I +++ ++    +CQ  D
Sbjct: 303 ANDIAIKLDCDEVTGCKDIVMEHINITSSSTKRPLTAYCQFAD 345

[Close]

BLAST of HG10021636 vs. TAIR 10
Match: AT4G35670.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 73.6 bits (179), Expect = 1.4e-13
Identity = 43/103 (41.75%), Postives = 63/103 (61.17%), Query Frame = 0


Query: 25  GGYGYARNITFEKITLKNVRNPIIIDQYYTSFAYSRKNKGIDIKVSDVTYREVNGTSVNE 84
           GG GYARNI+F  ITL N +NPIIIDQ+Y      R  +   + +S+V + +  GTS N+
Sbjct: 279 GGQGYARNISFTDITLVNTKNPIIIDQHYID--KGRLTEESAVAISNVKFVDFRGTSSNK 338

Query: 85  DAIILNCSQ-TRCSNIILNNVSIKTTTPRKEAKTFCQNVDEKS 127
           +AI L CS+ T C +++++ + I T     + K  CQ VD +S
Sbjct: 339 NAITLKCSETTHCVDVVMDGIDI-TMANGGKPKVNCQYVDGES 378

[Close]

BLAST of HG10021636 vs. TAIR 10
Match: AT1G70500.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 73.2 bits (178), Expect = 1.8e-13
Identity = 36/108 (33.33%), Postives = 64/108 (59.26%), Query Frame = 0


Query: 24  KGGYGYARNITFEKITLKNVRNPIIIDQYYTSFAYSRKNKGIDIKVSDVTYREVNGTSVN 83
           +GG GY + + FE + +++V NPIIIDQ+Y     + +N+   + +S++ YR + GT+ +
Sbjct: 324 QGGNGYVKGVRFENVVMQDVANPIIIDQFYCDSPSTCQNQTSAVHISEIMYRNITGTTKS 383

Query: 84  EDAIILNCSQ-TRCSNIILNNVSIKTTTPRKEAKTFCQNVDEKSLSVV 131
             AI   CS    CS+I+LNN++++    + EA  +C + +     VV
Sbjct: 384 SKAINFKCSDAVPCSHIVLNNINLEGNDGKVEA--YCNSAEGFGYGVV 429

[Close]

BLAST of HG10021636 vs. TAIR 10
Match: AT2G43860.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 72.8 bits (177), Expect = 2.4e-13
Identity = 40/109 (36.70%), Postives = 68/109 (62.39%), Query Frame = 0


Query: 24  KGGYGYARNITFEKITLKNVRNPIIIDQYYTSFAYSRKNKGIDIKVSDVTYREVNGTSVN 83
           K    +ARNI F+ I +K V+NPIIIDQ+Y       K +   +KVS+V Y +++GTS  
Sbjct: 288 KDSNSFARNIVFQHINMKMVKNPIIIDQHYCLHKPCPKQES-GVKVSNVRYEDIHGTSNT 347

Query: 84  EDAIILNCSQTR-CSNIILNNVSIKTTTPRKEAKTFCQNVDEKSLSVVP 132
           E A++L+CS+ + C+ I++++V++   +  + A+  C N +  +  VVP
Sbjct: 348 EVAVLLDCSKEKPCTGIVMDDVNL--VSVHRPAQASCDNANGSANDVVP 393

The following BLAST results are available for this feature:

BLAST of HG10021636 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008454473.1	6.3e-40	78.18	PREDICTED: probable polygalacturonase At3g15720 [Cucumis melo]	[more]
KAA0044700.1	6.3e-40	78.18	putative polygalacturonase [Cucumis melo var. makuwa] >TYK16887.1 putative polyg...	[more]
XP_038888676.1	1.4e-39	78.18	probable polygalacturonase At3g15720 [Benincasa hispida]	[more]
KGN53196.1	4.1e-39	75.45	hypothetical protein Csa_014667 [Cucumis sativus]	[more]
XP_031739967.1	4.1e-39	75.45	probable polygalacturonase At3g15720 [Cucumis sativus]	[more]

BLAST of HG10021636 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FY19	1.5e-12	43.18	Polygalacturonase OS=Juniperus ashei OX=13101 GN=JNA2 PE=1 SV=1	[more]
O22818	3.4e-12	36.70	Probable polygalacturonase At2g43860 OS=Arabidopsis thaliana OX=3702 GN=At2g4386...	[more]
Q8RY29	1.3e-11	44.71	Polygalacturonase ADPG2 OS=Arabidopsis thaliana OX=3702 GN=ADPG2 PE=2 SV=2	[more]
P35337	1.3e-11	41.24	Polygalacturonase OS=Brassica napus OX=3708 PE=2 SV=1	[more]
O23147	2.9e-11	40.18	Polygalacturonase ADPG1 OS=Arabidopsis thaliana OX=3702 GN=ADPG1 PE=2 SV=1	[more]

BLAST of HG10021636 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CYS8	3.0e-40	78.18	Putative polygalacturonase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A1S3BYT5	3.0e-40	78.18	probable polygalacturonase At3g15720 OS=Cucumis melo OX=3656 GN=LOC103494869 PE=...	[more]
A0A0A0KZ95	2.0e-39	75.45	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G025750 PE=3 SV=1	[more]
A0A6J1IWN4	2.3e-35	68.18	probable polygalacturonase At3g15720 OS=Cucurbita maxima OX=3661 GN=LOC111479259...	[more]
A0A6J1GVS6	2.9e-35	68.18	probable polygalacturonase At3g15720 OS=Cucurbita moschata OX=3662 GN=LOC1114579...	[more]

BLAST of HG10021636 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G27530.1	6.1e-17	44.23	Pectin lyase-like superfamily protein	[more]
AT4G32375.1	4.8e-14	36.89	Pectin lyase-like superfamily protein	[more]
AT4G35670.1	1.4e-13	41.75	Pectin lyase-like superfamily protein	[more]
AT1G70500.1	1.8e-13	33.33	Pectin lyase-like superfamily protein	[more]
AT2G43860.1	2.4e-13	36.70	Pectin lyase-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000743	Glycoside hydrolase, family 28	PFAM	PF00295	Glyco_hydro_28	coord: 24..125 e-value: 3.9E-19 score: 68.9
IPR012334	Pectin lyase fold	GENE3D	2.160.20.10		coord: 12..133 e-value: 1.2E-23 score: 85.7
None	No IPR available	PANTHER	PTHR31375:SF232	SUBFAMILY NOT NAMED	coord: 24..132
None	No IPR available	PANTHER	PTHR31375	FAMILY NOT NAMED	coord: 24..132
IPR011050	Pectin lyase fold/virulence factor	SUPERFAMILY	51126	Pectin lyase-like	coord: 23..131

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10021636.1	HG10021636.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
molecular_function	GO:0004650	polygalacturonase activity