HG10021598 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10021598
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr05: 12102940 .. 12103930 (-)
RNA-Seq ExpressionHG10021598
SyntenyHG10021598
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCACTGAGGTAACTCTTTTTCTGATCTCTTCAAAAAGTTTTGTATAAGAAGCTTCACTTAGTTGCTTTCATGAAATCAAACTAAACCAACAACAATGCATTTGATCCCTTTCATTTTGCTTAACTTTAGAGTCTTGTAATTTTCTTGACACATCTAATTATGATCCAAGGGTTCTTGGAGTCAGAAATGTTCATATCAAAACCATAACTTCAAAGTTTTACTTTTTTTTTTCCAATTTTAATGGACATAAAATTTGTTTATTTTGTTTCTTAATTAATCTTAGTTCTTTTAATTGAATTTACTTTTTTTTTTTGGGATAATTAATCTTAATTCTGTTTATGTAATCATATTGTCATGAAATTGAGATACATATTTTATGTCGATGGAGCTTCGTTCTATGTATATTTTATTTAATATCATAGCAACACTGGGTTTTGCAGGTTGAATCAGCCACAACTTTGCTGGAGACCGTGGAGTCACCGGAGGTGGTGAAGGCTGAGGAGAAATCTCCCGAAGAACAGCCAGCGATCGAGGCCGATCCGGAGGCTGAGCCAGCCAATGTCGTAGAAGAGCTAAAACCTGAAGTTCAAGAGTCCGATCAGGTAGAGTAAAAAAGAAAGAGAGAGGGATATAAGACCTAAAAGTTTGAGTAGGAAAAAAAAAATGGTTCCTACTTAATACATGTTCTGGGTTTCTTCCCTGCAGGTAGAGCAATCCGCGGAAGCTCCGGTGGAGCCCGCGAACCCTACAGAGGAACCCAAAGTCGAGGAGGAAGAAAAGAAAGAAGAAGTAGTAGTACCAACTGAATCGGTAGCGAAAGAAGAAGAGGTGCCCGAAGTCGAAGAACCAAAGGCTGAGGAGCCTCCAGCAGCCGAGGCCGAGGTCGAGGCTGAGGTCGAGCCAGCGGTGGAGGAAGAGAAACCAGTTGAAGAAGAGAAACCAGCTGAAGCTCCAGTTGAGGTAGCAGAAGAGCAGAGCCAAGAATAG

mRNA sequence

ATGGCCACTGAGGTTGAATCAGCCACAACTTTGCTGGAGACCGTGGAGTCACCGGAGGTGGTGAAGGCTGAGGAGAAATCTCCCGAAGAACAGCCAGCGATCGAGGCCGATCCGGAGGCTGAGCCAGCCAATGTCGTAGAAGAGCTAAAACCTGAAGTTCAAGAGTCCGATCAGGTAGAGCAATCCGCGGAAGCTCCGGTGGAGCCCGCGAACCCTACAGAGGAACCCAAAGTCGAGGAGGAAGAAAAGAAAGAAGAAGTAGTAGTACCAACTGAATCGGTAGCGAAAGAAGAAGAGGTGCCCGAAGTCGAAGAACCAAAGGCTGAGGAGCCTCCAGCAGCCGAGGCCGAGGTCGAGGCTGAGGTCGAGCCAGCGGTGGAGGAAGAGAAACCAGTTGAAGAAGAGAAACCAGCTGAAGCTCCAGTTGAGGTAGCAGAAGAGCAGAGCCAAGAATAG

Coding sequence (CDS)

ATGGCCACTGAGGTTGAATCAGCCACAACTTTGCTGGAGACCGTGGAGTCACCGGAGGTGGTGAAGGCTGAGGAGAAATCTCCCGAAGAACAGCCAGCGATCGAGGCCGATCCGGAGGCTGAGCCAGCCAATGTCGTAGAAGAGCTAAAACCTGAAGTTCAAGAGTCCGATCAGGTAGAGCAATCCGCGGAAGCTCCGGTGGAGCCCGCGAACCCTACAGAGGAACCCAAAGTCGAGGAGGAAGAAAAGAAAGAAGAAGTAGTAGTACCAACTGAATCGGTAGCGAAAGAAGAAGAGGTGCCCGAAGTCGAAGAACCAAAGGCTGAGGAGCCTCCAGCAGCCGAGGCCGAGGTCGAGGCTGAGGTCGAGCCAGCGGTGGAGGAAGAGAAACCAGTTGAAGAAGAGAAACCAGCTGAAGCTCCAGTTGAGGTAGCAGAAGAGCAGAGCCAAGAATAG

Protein sequence

MATEVESATTLLETVESPEVVKAEEKSPEEQPAIEADPEAEPANVVEELKPEVQESDQVEQSAEAPVEPANPTEEPKVEEEEKKEEVVVPTESVAKEEEVPEVEEPKAEEPPAAEAEVEAEVEPAVEEEKPVEEEKPAEAPVEVAEEQSQE
Homology
BLAST of HG10021598 vs. NCBI nr
Match: XP_038895685.1 (cytochrome c1-like [Benincasa hispida])

HSP 1 Score: 176.4 bits (446), Expect = 1.8e-40
Identity = 125/151 (82.78%), Postives = 129/151 (85.43%), Query Frame = 0

Query: 1   MATEVESATTLLETVESPEVVKAEEKSPEEQPAIEADPEAEPANVVEELKPEVQESDQVE 60
           MATEVESA TL ETVESPEVVKAEEK+PEEQPA EA PEAE AN VE+ KPEVQESDQ E
Sbjct: 1   MATEVESAATLPETVESPEVVKAEEKTPEEQPATEAKPEAESAN-VEKPKPEVQESDQAE 60

Query: 61  QSAEAPVEPANPTEEPKVEEEEKKEEVVVPTESVAKEEEVPEVEEPKAEEPPAAEAEVEA 120
           Q+AEAP EP NPTEEPKVEEEEKKEE VVPTESVAKEEEVPE EEPKAEEPPAAEA  EA
Sbjct: 61  QTAEAPAEPENPTEEPKVEEEEKKEEAVVPTESVAKEEEVPEAEEPKAEEPPAAEA--EA 120

Query: 121 EVEPAVEEEKPVEEEKPAEAPVEVAEEQSQE 152
           E EPA EEEK VEEEKPA    EVAEE+ QE
Sbjct: 121 EAEPAAEEEKQVEEEKPA----EVAEEKGQE 144

BLAST of HG10021598 vs. NCBI nr
Match: XP_008458953.1 (PREDICTED: probable serine/threonine-protein kinase kinX [Cucumis melo])

HSP 1 Score: 120.9 bits (302), Expect = 9.2e-24
Identity = 105/153 (68.63%), Postives = 111/153 (72.55%), Query Frame = 0

Query: 1   MATEVESATTLLETVESPEVVKAEEKSPEEQPAIEADPEAEPANVVEELKPEVQESDQVE 60
           MATEVE A  L ETV   EVVK EEKSPEEQP IEADPE EP N +EE KPE  E DQ +
Sbjct: 1   MATEVEPAAPLPETV---EVVKVEEKSPEEQPVIEADPEVEPTN-LEEPKPEAPEPDQTD 60

Query: 61  QSAEAPVEPANPTEEPKVEE-EEKKEEVVVPTESVAKEEEVPEVEEP-KAEEPPAAEAEV 120
           +S EAPVE ANP EE KVEE +EKKEE VV TE+V KEE V E EEP KAEE PAA    
Sbjct: 61  ESTEAPVESANPVEESKVEEDQEKKEETVVTTETVEKEEAVAEDEEPAKAEERPAA---- 120

Query: 121 EAEVEPAVEEEKPVEEEKPAEAPVEVAEEQSQE 152
           E E EP VEEEK VEEEK    PVEVAEE+SQE
Sbjct: 121 EVEAEPPVEEEKVVEEEK----PVEVAEEKSQE 141

BLAST of HG10021598 vs. NCBI nr
Match: KAA0054325.1 (putative serine/threonine-protein kinase kinX [Cucumis melo var. makuwa] >TYK12361.1 putative serine/threonine-protein kinase kinX [Cucumis melo var. makuwa])

HSP 1 Score: 116.3 bits (290), Expect = 2.3e-22
Identity = 102/153 (66.67%), Postives = 110/153 (71.90%), Query Frame = 0

Query: 1   MATEVESATTLLETVESPEVVKAEEKSPEEQPAIEADPEAEPANVVEELKPEVQESDQVE 60
           ++ EVE A  L ETV   EVVK EEKSPEEQP IEADPE EP N +EE KPE  E DQ +
Sbjct: 18  LSLEVEPAAPLPETV---EVVKVEEKSPEEQPVIEADPEVEPTN-LEEPKPEAPEPDQTD 77

Query: 61  QSAEAPVEPANPTEEPKVEE-EEKKEEVVVPTESVAKEEEVPEVEEP-KAEEPPAAEAEV 120
           +S EAPVE ANP EE KVEE +EKKEE VV TE+V KEE V E EEP KAEE PAA    
Sbjct: 78  ESTEAPVESANPVEESKVEEDQEKKEETVVTTETVEKEEAVAEDEEPAKAEERPAA---- 137

Query: 121 EAEVEPAVEEEKPVEEEKPAEAPVEVAEEQSQE 152
           E E EP VEEEK VEEEK    PVEVAEE+SQE
Sbjct: 138 EVEAEPPVEEEKVVEEEK----PVEVAEEKSQE 158

BLAST of HG10021598 vs. NCBI nr
Match: XP_004139547.1 (uncharacterized protein LOC101220582 [Cucumis sativus] >KGN65063.1 hypothetical protein Csa_013003 [Cucumis sativus])

HSP 1 Score: 110.2 bits (274), Expect = 1.6e-20
Identity = 102/153 (66.67%), Postives = 110/153 (71.90%), Query Frame = 0

Query: 1   MATEVESATTLLETVESPEVVKAEEKSPEEQPAIEADPEAEPANVVEELKPEVQESDQVE 60
           MATEVESA +L ETV   EVVK E+KS EEQP IEADPE EPAN +EE KPE  E DQVE
Sbjct: 1   MATEVESAASLPETV---EVVKVEKKSSEEQPVIEADPEVEPAN-LEEPKPEALEPDQVE 60

Query: 61  QSAEAPVEPANPTEEPKVEE-EEKKEEVVVPTESVAKEEEVPEVEE-PKAEEPPAAEAEV 120
           +S EAPV      EE KVEE +EKKEE VV TES  KEE VPE EE  K EE PA  AEV
Sbjct: 61  ESTEAPV------EESKVEEGQEKKEETVVATESEEKEEAVPEAEESAKVEESPA--AEV 120

Query: 121 EAEVEPAVEEEKPVEEEKPAEAPVEVAEEQSQE 152
           EAE +P VEEEK +EEEK    P EVAEE+SQE
Sbjct: 121 EAEAKPQVEEEKAIEEEK----PTEVAEEKSQE 137

BLAST of HG10021598 vs. NCBI nr
Match: XP_022142401.1 (uncharacterized protein LOC111012542 [Momordica charantia])

HSP 1 Score: 83.2 bits (204), Expect = 2.1e-12
Identity = 89/151 (58.94%), Postives = 99/151 (65.56%), Query Frame = 0

Query: 2   ATEVESA-TTLLETVESPEVVKAEEKSPEEQPAIEADPEAEPANVVEELKPEVQESDQVE 61
           + EVES+   L E VE+PE  K EEKSPE QPA E  P AEPA+ VEE KPE  E+DQ  
Sbjct: 3   SVEVESSVANLPENVEAPE-AKVEEKSPEVQPASEESPVAEPAD-VEEPKPEATEADQAV 62

Query: 62  QSAEAPVEPANPTEEPKVEEEEKKEEVVVPTESVAKEEEVPEVEEPKAEEPPAAEAEVEA 121
           QSA+AP E     EEP+VEEEEKKEE     ESV K E VP  EEPKAEE   AE   E 
Sbjct: 63  QSAKAPEEAVEAAEEPRVEEEEKKEE-AAEAESVDK-EAVPAAEEPKAEESQTAEPAAE- 122

Query: 122 EVEPAVEEEKPVEEEKPAEAPVEVAEEQSQE 152
               AVE+EKPVE+EK A    EVAEE+SQE
Sbjct: 123 PAAAAVEDEKPVEKEKAA----EVAEEKSQE 144

BLAST of HG10021598 vs. ExPASy TrEMBL
Match: A0A1S3C9M0 (probable serine/threonine-protein kinase kinX OS=Cucumis melo OX=3656 GN=LOC103498212 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 4.5e-24
Identity = 105/153 (68.63%), Postives = 111/153 (72.55%), Query Frame = 0

Query: 1   MATEVESATTLLETVESPEVVKAEEKSPEEQPAIEADPEAEPANVVEELKPEVQESDQVE 60
           MATEVE A  L ETV   EVVK EEKSPEEQP IEADPE EP N +EE KPE  E DQ +
Sbjct: 1   MATEVEPAAPLPETV---EVVKVEEKSPEEQPVIEADPEVEPTN-LEEPKPEAPEPDQTD 60

Query: 61  QSAEAPVEPANPTEEPKVEE-EEKKEEVVVPTESVAKEEEVPEVEEP-KAEEPPAAEAEV 120
           +S EAPVE ANP EE KVEE +EKKEE VV TE+V KEE V E EEP KAEE PAA    
Sbjct: 61  ESTEAPVESANPVEESKVEEDQEKKEETVVTTETVEKEEAVAEDEEPAKAEERPAA---- 120

Query: 121 EAEVEPAVEEEKPVEEEKPAEAPVEVAEEQSQE 152
           E E EP VEEEK VEEEK    PVEVAEE+SQE
Sbjct: 121 EVEAEPPVEEEKVVEEEK----PVEVAEEKSQE 141

BLAST of HG10021598 vs. ExPASy TrEMBL
Match: A0A5D3CKL4 (Putative serine/threonine-protein kinase kinX OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G001390 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 1.1e-22
Identity = 102/153 (66.67%), Postives = 110/153 (71.90%), Query Frame = 0

Query: 1   MATEVESATTLLETVESPEVVKAEEKSPEEQPAIEADPEAEPANVVEELKPEVQESDQVE 60
           ++ EVE A  L ETV   EVVK EEKSPEEQP IEADPE EP N +EE KPE  E DQ +
Sbjct: 18  LSLEVEPAAPLPETV---EVVKVEEKSPEEQPVIEADPEVEPTN-LEEPKPEAPEPDQTD 77

Query: 61  QSAEAPVEPANPTEEPKVEE-EEKKEEVVVPTESVAKEEEVPEVEEP-KAEEPPAAEAEV 120
           +S EAPVE ANP EE KVEE +EKKEE VV TE+V KEE V E EEP KAEE PAA    
Sbjct: 78  ESTEAPVESANPVEESKVEEDQEKKEETVVTTETVEKEEAVAEDEEPAKAEERPAA---- 137

Query: 121 EAEVEPAVEEEKPVEEEKPAEAPVEVAEEQSQE 152
           E E EP VEEEK VEEEK    PVEVAEE+SQE
Sbjct: 138 EVEAEPPVEEEKVVEEEK----PVEVAEEKSQE 158

BLAST of HG10021598 vs. ExPASy TrEMBL
Match: A0A0A0LTG9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G187170 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 7.9e-21
Identity = 102/153 (66.67%), Postives = 110/153 (71.90%), Query Frame = 0

Query: 1   MATEVESATTLLETVESPEVVKAEEKSPEEQPAIEADPEAEPANVVEELKPEVQESDQVE 60
           MATEVESA +L ETV   EVVK E+KS EEQP IEADPE EPAN +EE KPE  E DQVE
Sbjct: 1   MATEVESAASLPETV---EVVKVEKKSSEEQPVIEADPEVEPAN-LEEPKPEALEPDQVE 60

Query: 61  QSAEAPVEPANPTEEPKVEE-EEKKEEVVVPTESVAKEEEVPEVEE-PKAEEPPAAEAEV 120
           +S EAPV      EE KVEE +EKKEE VV TES  KEE VPE EE  K EE PA  AEV
Sbjct: 61  ESTEAPV------EESKVEEGQEKKEETVVATESEEKEEAVPEAEESAKVEESPA--AEV 120

Query: 121 EAEVEPAVEEEKPVEEEKPAEAPVEVAEEQSQE 152
           EAE +P VEEEK +EEEK    P EVAEE+SQE
Sbjct: 121 EAEAKPQVEEEKAIEEEK----PTEVAEEKSQE 137

BLAST of HG10021598 vs. ExPASy TrEMBL
Match: A0A6J1CM25 (uncharacterized protein LOC111012542 OS=Momordica charantia OX=3673 GN=LOC111012542 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.0e-12
Identity = 89/151 (58.94%), Postives = 99/151 (65.56%), Query Frame = 0

Query: 2   ATEVESA-TTLLETVESPEVVKAEEKSPEEQPAIEADPEAEPANVVEELKPEVQESDQVE 61
           + EVES+   L E VE+PE  K EEKSPE QPA E  P AEPA+ VEE KPE  E+DQ  
Sbjct: 3   SVEVESSVANLPENVEAPE-AKVEEKSPEVQPASEESPVAEPAD-VEEPKPEATEADQAV 62

Query: 62  QSAEAPVEPANPTEEPKVEEEEKKEEVVVPTESVAKEEEVPEVEEPKAEEPPAAEAEVEA 121
           QSA+AP E     EEP+VEEEEKKEE     ESV K E VP  EEPKAEE   AE   E 
Sbjct: 63  QSAKAPEEAVEAAEEPRVEEEEKKEE-AAEAESVDK-EAVPAAEEPKAEESQTAEPAAE- 122

Query: 122 EVEPAVEEEKPVEEEKPAEAPVEVAEEQSQE 152
               AVE+EKPVE+EK A    EVAEE+SQE
Sbjct: 123 PAAAAVEDEKPVEKEKAA----EVAEEKSQE 144

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038895685.11.8e-4082.78cytochrome c1-like [Benincasa hispida][more]
XP_008458953.19.2e-2468.63PREDICTED: probable serine/threonine-protein kinase kinX [Cucumis melo][more]
KAA0054325.12.3e-2266.67putative serine/threonine-protein kinase kinX [Cucumis melo var. makuwa] >TYK123... [more]
XP_004139547.11.6e-2066.67uncharacterized protein LOC101220582 [Cucumis sativus] >KGN65063.1 hypothetical ... [more]
XP_022142401.12.1e-1258.94uncharacterized protein LOC111012542 [Momordica charantia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A1S3C9M04.5e-2468.63probable serine/threonine-protein kinase kinX OS=Cucumis melo OX=3656 GN=LOC1034... [more]
A0A5D3CKL41.1e-2266.67Putative serine/threonine-protein kinase kinX OS=Cucumis melo var. makuwa OX=119... [more]
A0A0A0LTG97.9e-2166.67Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G187170 PE=4 SV=1[more]
A0A6J1CM251.0e-1258.94uncharacterized protein LOC111012542 OS=Momordica charantia OX=3673 GN=LOC111012... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 18..33
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..151
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 73..114
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 43..57

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10021598.1HG10021598.1mRNA