Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATATGCCATATTTTGCCCCGTTCCTTGAGAATGAAAAAAGAGTGATGAAAGAGGTTGAAGAAGAATTGAACAAGTATATGTCGAAAGAAAGAGTGGTTGGGCTTTCATTGAATAAAGGACTCGCTTATGGGAATGATGTAAGGTTTGAATGCATGGAGAAGATACAAGAATCAATGAAGAAAACAATGGAGGAAAAATTTGAAGAAATAAATATTGGTAGAGAAATATTGACAAAGAAAATAGATGACTTGGTTGAAATATTAAAAATAATGATTGACTACATGAAAAATACATCTGTTGGTGCAGCACGTGTTTCGACAAGTAATTTGTATATGGTACGTAATAAAACTACATTGTATTTCTTTCCTTTTCTTTCCTACTTCACTATATTTATACATTATATAATAATAGGCAGCATCTGAATTCGAACAAGAACTTGATGAAATTGAGAAAGAACAGGAAGAAAAGGAAGAAGAAAAAGAGTTTGTTGATGGTTCTGATCATCCAACAACAATTAGAATAAACGATGACAACCAAGATGATGAAGGACAAGGAAAGAAGGACCCACAATCCACGTAG
mRNA sequence
ATGAATATGCCATATTTTGCCCCGTTCCTTGAGAATGAAAAAAGAGTGATGAAAGAGGTTGAAGAAGAATTGAACAAGTATATGTCGAAAGAAAGAGTGGTTGGGCTTTCATTGAATAAAGGACTCGCTTATGGGAATGATGTAAGGTTTGAATGCATGGAGAAGATACAAGAATCAATGAAGAAAACAATGGAGGAAAAATTTGAAGAAATAAATATTGGTAGAGAAATATTGACAAAGAAAATAGATGACTTGGTTGAAATATTAAAAATAATGATTGACTACATGAAAAATACATCTGTTGGTGCAGCACGTGTTTCGACAAGTAATTTGTATATGGCAGCATCTGAATTCGAACAAGAACTTGATGAAATTGAGAAAGAACAGGAAGAAAAGGAAGAAGAAAAAGAGTTTGTTGATGGTTCTGATCATCCAACAACAATTAGAATAAACGATGACAACCAAGATGATGAAGGACAAGGAAAGAAGGACCCACAATCCACGTAG
Coding sequence (CDS)
ATGAATATGCCATATTTTGCCCCGTTCCTTGAGAATGAAAAAAGAGTGATGAAAGAGGTTGAAGAAGAATTGAACAAGTATATGTCGAAAGAAAGAGTGGTTGGGCTTTCATTGAATAAAGGACTCGCTTATGGGAATGATGTAAGGTTTGAATGCATGGAGAAGATACAAGAATCAATGAAGAAAACAATGGAGGAAAAATTTGAAGAAATAAATATTGGTAGAGAAATATTGACAAAGAAAATAGATGACTTGGTTGAAATATTAAAAATAATGATTGACTACATGAAAAATACATCTGTTGGTGCAGCACGTGTTTCGACAAGTAATTTGTATATGGCAGCATCTGAATTCGAACAAGAACTTGATGAAATTGAGAAAGAACAGGAAGAAAAGGAAGAAGAAAAAGAGTTTGTTGATGGTTCTGATCATCCAACAACAATTAGAATAAACGATGACAACCAAGATGATGAAGGACAAGGAAAGAAGGACCCACAATCCACGTAG
Protein sequence
MNMPYFAPFLENEKRVMKEVEEELNKYMSKERVVGLSLNKGLAYGNDVRFECMEKIQESMKKTMEEKFEEINIGREILTKKIDDLVEILKIMIDYMKNTSVGAARVSTSNLYMAASEFEQELDEIEKEQEEKEEEKEFVDGSDHPTTIRINDDNQDDEGQGKKDPQST
Homology
BLAST of HG10021559 vs. NCBI nr
Match:
XP_038887714.1 (cilia- and flagella-associated protein 251-like [Benincasa hispida])
HSP 1 Score: 162.2 bits (409), Expect = 4.0e-36
Identity = 95/168 (56.55%), Postives = 121/168 (72.02%), Query Frame = 0
Query: 1 MNMPYFAPFLENEKRVMKEVEEELNKYMSKERVVGLSLNK--GLAYGND--VRFECMEKI 60
M M YFAPF+ EK+V++EVEEE+++Y ++RVV LSLN+ GL++ D RFE + KI
Sbjct: 79 MTMSYFAPFINEEKKVLQEVEEEMSRYRPRKRVVELSLNRRLGLSFDKDEMERFEGIVKI 138
Query: 61 QESMKKTMEEKFEEINIGREILTKKIDDLVEILKIMIDYMKNTSVGAARVSTSNLYMAAS 120
Q+ M M+E F+ + I + ILTKKIDDLVE LK MIDYMK + STSNL+M S
Sbjct: 139 QQLMNTRMDENFDAMKISQHILTKKIDDLVESLKKMIDYMKTIQTFQSHASTSNLFMPTS 198
Query: 121 EFEQELDEIEKEQEEKEEEKEFVDGSDHPTTIRINDDNQDDEGQGKKD 165
+FE+ELD IEKEQEEKEE+K VD D PT IR DD++D+EGQG KD
Sbjct: 199 QFEKELDGIEKEQEEKEEDKGLVDAFDTPTIIRRKDDDEDEEGQGNKD 246
BLAST of HG10021559 vs. NCBI nr
Match:
KAA0035989.1 (protein Ycf2-like [Cucumis melo var. makuwa])
HSP 1 Score: 75.9 bits (185), Expect = 3.8e-10
Identity = 53/172 (30.81%), Postives = 100/172 (58.14%), Query Frame = 0
Query: 1 MNMPYFAPFLENEKRVMKEVEEELNKYMSKERVVGLSLNKGL--AYGNDVRFECMEKIQE 60
+ MPYFAPF+E EK ++KE E+EL K + + + +SLN+G+ G DV + ++KI+
Sbjct: 193 VGMPYFAPFIETEKDILKEAEDELRKTKNSDHIARVSLNRGMPSTSGIDVLTKMVDKIEN 252
Query: 61 SMKK---TMEEKFEEINIGREILTKKIDDLVEILKIMIDYMKNTSVGAARVSTSNLYMAA 120
S K+ ++E E + L + ++L + + +I+ +++ ++ ++ +M A
Sbjct: 253 SQKRMETSVEGILEFLKFVELKLNNRFEELGQKMNRIIEAIRSQKYSSSGGQYTHKFMGA 312
Query: 121 SEFEQELDEIEKEQEEKEEEKEFVDGSDHPTTIRINDDNQDDEGQGKKDPQS 168
FE+ LD++E +QEE + E +D S +PT + DD++D G+G D ++
Sbjct: 313 RAFEEHLDKVEDDQEEDDVEDLNLD-SSNPTVLGKRDDDEDKHGKGLMDEKT 363
BLAST of HG10021559 vs. NCBI nr
Match:
TYK30414.1 (protein Ycf2-like [Cucumis melo var. makuwa])
HSP 1 Score: 75.9 bits (185), Expect = 3.8e-10
Identity = 53/172 (30.81%), Postives = 100/172 (58.14%), Query Frame = 0
Query: 1 MNMPYFAPFLENEKRVMKEVEEELNKYMSKERVVGLSLNKGL--AYGNDVRFECMEKIQE 60
+ MPYFAPF+E EK ++KE E+EL K + + + +SLN+G+ G DV + ++KI+
Sbjct: 191 VGMPYFAPFIETEKDILKEAEDELRKTKNSDHIARVSLNRGMPSTSGIDVLTKMVDKIEN 250
Query: 61 SMKK---TMEEKFEEINIGREILTKKIDDLVEILKIMIDYMKNTSVGAARVSTSNLYMAA 120
S K+ ++E E + L + ++L + + +I+ +++ ++ ++ +M A
Sbjct: 251 SQKRMETSVEGILEFLKFVELKLNNRFEELGQKMNRIIEAIRSQKYSSSGGQYTHKFMGA 310
Query: 121 SEFEQELDEIEKEQEEKEEEKEFVDGSDHPTTIRINDDNQDDEGQGKKDPQS 168
FE+ LD++E +QEE + E +D S +PT + DD++D G+G D ++
Sbjct: 311 RAFEEHLDKVEDDQEEDDVEDLNLD-SSNPTVLGKRDDDEDKHGKGLMDEKT 361
BLAST of HG10021559 vs. NCBI nr
Match:
KAA0033753.1 (protein Ycf2-like [Cucumis melo var. makuwa] >TYK06532.1 protein Ycf2-like [Cucumis melo var. makuwa])
HSP 1 Score: 72.0 bits (175), Expect = 5.5e-09
Identity = 51/169 (30.18%), Postives = 98/169 (57.99%), Query Frame = 0
Query: 1 MNMPYFAPFLENEKRVMKEVEEELNKYMSKERVVGLSLNKGL--AYGNDVRFECMEKIQE 60
+ MPYFAPF+E EK ++KE E+EL K + + + +SLN+G+ G DV + +EKI+
Sbjct: 173 VGMPYFAPFIETEKDILKEAEDELRKTKNSDHIAHVSLNRGMPSTSGIDVLMKMVEKIEN 232
Query: 61 SMKK---TMEEKFEEINIGREILTKKIDDLVEILKIMIDYMKNTSVGAARVSTSNLYMAA 120
S K+ ++E E + + + ++L + + +I+ +K+ ++ ++ +M A
Sbjct: 233 SQKRMETSVEGILEFLKSVELKMNNRFEELRQKMNGIIEAIKSQQRSSSGGQYTHKFMGA 292
Query: 121 SEFEQELDEIEKEQEEKEEEKEFVDGSDHPTTIRINDDNQDDEGQGKKD 165
FE+ L+++E++QEE ++ K S +PT + DD++D + +G D
Sbjct: 293 RAFEEHLEKVEEDQEE-DDVKHLNLNSSNPTVLGKRDDDEDKDEKGLTD 340
BLAST of HG10021559 vs. NCBI nr
Match:
TYK19697.1 (protein Ycf2-like [Cucumis melo var. makuwa])
HSP 1 Score: 68.2 bits (165), Expect = 7.9e-08
Identity = 46/165 (27.88%), Postives = 93/165 (56.36%), Query Frame = 0
Query: 1 MNMPYFAPFLENEKRVMKEVEEELNKYMSKERVVGLSLNKGLAYGNDVR-----FECMEK 60
+ MPYFAPF+E EK ++KE E+EL K + + + +SLN+G+ + + E E
Sbjct: 144 VGMPYFAPFIETEKDILKEAEDELRKTKNSDHIAHVSLNRGMPSTSGINVLTKMVEKFEN 203
Query: 61 IQESMKKTMEEKFEEINIGREILTKKIDDLVEILKIMIDYMKNTSVGAARVSTSNLYMAA 120
Q+ M+ ++E E + + + +L + + +I+ +++ ++ ++ +M A
Sbjct: 204 SQQRMETSVEGILEFLKCVELKMNNRFKELGQKMNGIIEAIRSQQCSSSGGQYTHEFMGA 263
Query: 121 SEFEQELDEIEKEQEEKEEEKEFVDGSDHPTTIRINDDNQDDEGQ 161
FE+ LD+++++QEE + E +D S +PT + DD++D +G+
Sbjct: 264 RAFEEHLDKVKEDQEEDDVEDLNLD-SSNPTVLEKRDDDEDKDGK 307
BLAST of HG10021559 vs. ExPASy TrEMBL
Match:
A0A5A7T3K3 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G002030 PE=4 SV=1)
HSP 1 Score: 75.9 bits (185), Expect = 1.8e-10
Identity = 53/172 (30.81%), Postives = 100/172 (58.14%), Query Frame = 0
Query: 1 MNMPYFAPFLENEKRVMKEVEEELNKYMSKERVVGLSLNKGL--AYGNDVRFECMEKIQE 60
+ MPYFAPF+E EK ++KE E+EL K + + + +SLN+G+ G DV + ++KI+
Sbjct: 193 VGMPYFAPFIETEKDILKEAEDELRKTKNSDHIARVSLNRGMPSTSGIDVLTKMVDKIEN 252
Query: 61 SMKK---TMEEKFEEINIGREILTKKIDDLVEILKIMIDYMKNTSVGAARVSTSNLYMAA 120
S K+ ++E E + L + ++L + + +I+ +++ ++ ++ +M A
Sbjct: 253 SQKRMETSVEGILEFLKFVELKLNNRFEELGQKMNRIIEAIRSQKYSSSGGQYTHKFMGA 312
Query: 121 SEFEQELDEIEKEQEEKEEEKEFVDGSDHPTTIRINDDNQDDEGQGKKDPQS 168
FE+ LD++E +QEE + E +D S +PT + DD++D G+G D ++
Sbjct: 313 RAFEEHLDKVEDDQEEDDVEDLNLD-SSNPTVLGKRDDDEDKHGKGLMDEKT 363
BLAST of HG10021559 vs. ExPASy TrEMBL
Match:
A0A5D3E3E8 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold349G00160 PE=4 SV=1)
HSP 1 Score: 75.9 bits (185), Expect = 1.8e-10
Identity = 53/172 (30.81%), Postives = 100/172 (58.14%), Query Frame = 0
Query: 1 MNMPYFAPFLENEKRVMKEVEEELNKYMSKERVVGLSLNKGL--AYGNDVRFECMEKIQE 60
+ MPYFAPF+E EK ++KE E+EL K + + + +SLN+G+ G DV + ++KI+
Sbjct: 191 VGMPYFAPFIETEKDILKEAEDELRKTKNSDHIARVSLNRGMPSTSGIDVLTKMVDKIEN 250
Query: 61 SMKK---TMEEKFEEINIGREILTKKIDDLVEILKIMIDYMKNTSVGAARVSTSNLYMAA 120
S K+ ++E E + L + ++L + + +I+ +++ ++ ++ +M A
Sbjct: 251 SQKRMETSVEGILEFLKFVELKLNNRFEELGQKMNRIIEAIRSQKYSSSGGQYTHKFMGA 310
Query: 121 SEFEQELDEIEKEQEEKEEEKEFVDGSDHPTTIRINDDNQDDEGQGKKDPQS 168
FE+ LD++E +QEE + E +D S +PT + DD++D G+G D ++
Sbjct: 311 RAFEEHLDKVEDDQEEDDVEDLNLD-SSNPTVLGKRDDDEDKHGKGLMDEKT 361
BLAST of HG10021559 vs. ExPASy TrEMBL
Match:
A0A5A7STD7 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2249G00040 PE=4 SV=1)
HSP 1 Score: 72.0 bits (175), Expect = 2.6e-09
Identity = 51/169 (30.18%), Postives = 98/169 (57.99%), Query Frame = 0
Query: 1 MNMPYFAPFLENEKRVMKEVEEELNKYMSKERVVGLSLNKGL--AYGNDVRFECMEKIQE 60
+ MPYFAPF+E EK ++KE E+EL K + + + +SLN+G+ G DV + +EKI+
Sbjct: 173 VGMPYFAPFIETEKDILKEAEDELRKTKNSDHIAHVSLNRGMPSTSGIDVLMKMVEKIEN 232
Query: 61 SMKK---TMEEKFEEINIGREILTKKIDDLVEILKIMIDYMKNTSVGAARVSTSNLYMAA 120
S K+ ++E E + + + ++L + + +I+ +K+ ++ ++ +M A
Sbjct: 233 SQKRMETSVEGILEFLKSVELKMNNRFEELRQKMNGIIEAIKSQQRSSSGGQYTHKFMGA 292
Query: 121 SEFEQELDEIEKEQEEKEEEKEFVDGSDHPTTIRINDDNQDDEGQGKKD 165
FE+ L+++E++QEE ++ K S +PT + DD++D + +G D
Sbjct: 293 RAFEEHLEKVEEDQEE-DDVKHLNLNSSNPTVLGKRDDDEDKDEKGLTD 340
BLAST of HG10021559 vs. ExPASy TrEMBL
Match:
A0A5D3D818 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold242G00980 PE=4 SV=1)
HSP 1 Score: 68.2 bits (165), Expect = 3.8e-08
Identity = 46/165 (27.88%), Postives = 93/165 (56.36%), Query Frame = 0
Query: 1 MNMPYFAPFLENEKRVMKEVEEELNKYMSKERVVGLSLNKGLAYGNDVR-----FECMEK 60
+ MPYFAPF+E EK ++KE E+EL K + + + +SLN+G+ + + E E
Sbjct: 144 VGMPYFAPFIETEKDILKEAEDELRKTKNSDHIAHVSLNRGMPSTSGINVLTKMVEKFEN 203
Query: 61 IQESMKKTMEEKFEEINIGREILTKKIDDLVEILKIMIDYMKNTSVGAARVSTSNLYMAA 120
Q+ M+ ++E E + + + +L + + +I+ +++ ++ ++ +M A
Sbjct: 204 SQQRMETSVEGILEFLKCVELKMNNRFKELGQKMNGIIEAIRSQQCSSSGGQYTHEFMGA 263
Query: 121 SEFEQELDEIEKEQEEKEEEKEFVDGSDHPTTIRINDDNQDDEGQ 161
FE+ LD+++++QEE + E +D S +PT + DD++D +G+
Sbjct: 264 RAFEEHLDKVKEDQEEDDVEDLNLD-SSNPTVLEKRDDDEDKDGK 307
BLAST of HG10021559 vs. ExPASy TrEMBL
Match:
A0A5A7TF74 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold93G00140 PE=4 SV=1)
HSP 1 Score: 68.2 bits (165), Expect = 3.8e-08
Identity = 46/165 (27.88%), Postives = 93/165 (56.36%), Query Frame = 0
Query: 1 MNMPYFAPFLENEKRVMKEVEEELNKYMSKERVVGLSLNKGLAYGNDVR-----FECMEK 60
+ MPYFAPF+E EK ++KE E+EL K + + + +SLN+G+ + + E E
Sbjct: 390 VGMPYFAPFIETEKDILKEAEDELRKTKNSDHIAHVSLNRGMPSTSGINVLTKMVEKFEN 449
Query: 61 IQESMKKTMEEKFEEINIGREILTKKIDDLVEILKIMIDYMKNTSVGAARVSTSNLYMAA 120
Q+ M+ ++E E + + + +L + + +I+ +++ ++ ++ +M A
Sbjct: 450 SQQRMETSVEGILEFLKCVELKMNNRFKELGQKMNGIIEAIRSQQCSSSGGQYTHEFMGA 509
Query: 121 SEFEQELDEIEKEQEEKEEEKEFVDGSDHPTTIRINDDNQDDEGQ 161
FE+ LD+++++QEE + E +D S +PT + DD++D +G+
Sbjct: 510 RAFEEHLDKVKEDQEEDDVEDLNLD-SSNPTVLEKRDDDEDKDGK 553
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_038887714.1 | 4.0e-36 | 56.55 | cilia- and flagella-associated protein 251-like [Benincasa hispida] | [more] |
KAA0035989.1 | 3.8e-10 | 30.81 | protein Ycf2-like [Cucumis melo var. makuwa] | [more] |
TYK30414.1 | 3.8e-10 | 30.81 | protein Ycf2-like [Cucumis melo var. makuwa] | [more] |
KAA0033753.1 | 5.5e-09 | 30.18 | protein Ycf2-like [Cucumis melo var. makuwa] >TYK06532.1 protein Ycf2-like [Cucu... | [more] |
TYK19697.1 | 7.9e-08 | 27.88 | protein Ycf2-like [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7T3K3 | 1.8e-10 | 30.81 | Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G002... | [more] |
A0A5D3E3E8 | 1.8e-10 | 30.81 | Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold349G00... | [more] |
A0A5A7STD7 | 2.6e-09 | 30.18 | Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2249G0... | [more] |
A0A5D3D818 | 3.8e-08 | 27.88 | Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold242G00... | [more] |
A0A5A7TF74 | 3.8e-08 | 27.88 | Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold93G001... | [more] |
Match Name | E-value | Identity | Description | |