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HG10021534 (gene) Bottle gourd (Hangzhou Gourd) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGTGTTGTCAGAGGAGGAAATCACCAGACTCTTTAGAGTCCGGAAAACTGTATTGCAGATGTTGAAAGACAGAGGCTACTTTGTTGGAGACTTCGAGCTTGATATGTCAAGAGGACAATTTAAGCATAAGTTCGGCGAGAGCATGAAAAGAGAAGATCTTGTTATCAATAAATCCATGAGAAATAATAGCTCTGACCAGGTATAATCTCATGCTATACAATGATAATATCATTTATTTAGCCTCCTTTTCATTACTATTTAGTTTTTGGTTTTTAGTTTCTGAAAATTGTGTTTGTTGTTCTTATCCAAACAAAATAAAATTGTGTTTGTTGTCTCCCAACTTATTTACCATGATGTTCATTTTCTTAAGTAAACATCAAATTCTTAGCAAGTTCCAACAAAAAGAAAATGAAATTTAAAAAACTATTTTTCTTTAGTTTTCAAAATTTTGTTTAGGTTTTGAAAACTCTTATAAAACATAGATAATAAAATAAAGAAACTAATAAGTGGAAGTAGTATTTAGAAAATTTTTAAGAACTAAAAACCAAATGGTTATAAAATGGGGTCTCATTGACTCATGCAATTAGTTGCGTATTTGAACATGTTTAAACTTTAACTTGTTAAAATGTTGCAGTAAATTTCCTCCGGAGAAGTTTATATTTGAGTCATTTTCAAGTACTTTGACATGGAAAATACTTAACCATCGATCGTTGAGTAGTATATAATATTATTTGATAAATATTTCCCAAACTTTTATAAAGTTTGGTTATAGGGATGTACATGTTATTTGTTAACCCTTTTTTATTTATTCCCCTCCTCTTATTTATGAGTCTTTTACACAGATATATATTTTCTTTCCTGAAGAGCCGAAGGTTGGTATCAAGACATTGGATACTTATAAAAAACGTATGAAATCAGAGAATGTTTTTAGAGCAATATTGGTTGTTCAACAGAACTTGACCCCCTTTGCTCGTACTTCTATTGGCGAAATATCCTCTAAAGTCCATTTGGAGGTTTTCCAGGTAAAACTTAAATCTCTAAGGGGGTGTTTGGGGTAAGAAGTGGAATAGTGAGGAGTAAAGAGTTATGAAGTCTAGAGAGTTGTAAAGTCTTGGGGCTCACAATGTAAGGAGTTAATAAGATATAAAATTGATGTTTTTTTAGTAGTGAGATCCACCAACTCTTTGGGCCAAATGAGGAGTGGAGTTCATAACCTCCTACTTCCCCACTCTACTTTCAAAATCTTTGGGCCAAACACACCCTAAATGGTTTCTGGAGTCTTTTAATGTCGGATAGATACAGTAATATTATCATAGGCTAAAAATTTGATGAGAACTAGAGAGGATCTTCTATGCTCCTATCCTAAAACTAGTTCTCATACTTTTTTTTGTCTCTCACATCAACAGCGAGAATGAAAAGGGAGGGGGGGGGGGGGGTGTAAAGAATGGTAATGTTAGTTTGTAATTACTTATGTGATTTCCATTTTTCACATAATTATGCCTACATTCTTATTTTACTGAAGTTCATGTTTACCTCTTTGTCACTTTTTGATGCAGGAAGCAGAATTGATGGTTAACATTAAAAATCATGTTCTCATTCCCGAGCACGTGTCTCTGACAAATGAAGAGAAGAAGACGTTGTTGGAGAGGTATACAGTGAAAGAAACACAAGTGAGTTTCATTTTATTTGATCGTATTTTCTTTAAAAACACGAATATTATAAGAATTTATCTTCCACAAATATGTTGAAATAATCATTGTAGATTGGCCTGTGGTGAATAAGGGCTATGTAAATAATATAGGTTTTAGGGAATGAGTTCAAGCCATGATGATCACCTACTTAAGATTTAATACCCTACAAGTTACATTGACAATCAAATATCGTAGAGTTAGGTGGCTGTTTCGTTTGAATAGTCGAGATGCGCACATGCTGAGTTTTTGACACTCTTGGATACATATTGAGATGTGTTTCTGTTAGTTCCTCAAGTGATTTTGTATTTTGTCTCAGCTACCTCGCATTCAGGTTTCCGATCCAATTGCTAGATATTATGGGCTGAAGCGTGGACAAGTAGTAAAGATCATCCGACCAAGTGAAACTGCAGGAAGATATGTGACTTATAGATATGTTGTTTGA ATGGTGTTGTCAGAGGAGGAAATCACCAGACTCTTTAGAGTCCGGAAAACTGTATTGCAGATGTTGAAAGACAGAGGCTACTTTGTTGGAGACTTCGAGCTTGATATGTCAAGAGGACAATTTAAGCATAAGTTCGGCGAGAGCATGAAAAGAGAAGATCTTGTTATCAATAAATCCATGAGAAATAATAGCTCTGACCAGATATATATTTTCTTTCCTGAAGAGCCGAAGGTTGGTATCAAGACATTGGATACTTATAAAAAACGTATGAAATCAGAGAATGTTTTTAGAGCAATATTGGTTGTTCAACAGAACTTGACCCCCTTTGCTCGTACTTCTATTGGCGAAATATCCTCTAAAGTCCATTTGGAGGTTTTCCAGGAAGCAGAATTGATGGTTAACATTAAAAATCATGTTCTCATTCCCGAGCACGTGTCTCTGACAAATGAAGAGAAGAAGACGTTGTTGGAGAGGTATACAGTGAAAGAAACACAACTACCTCGCATTCAGGTTTCCGATCCAATTGCTAGATATTATGGGCTGAAGCGTGGACAAGTAGTAAAGATCATCCGACCAAGTGAAACTGCAGGAAGATATGTGACTTATAGATATGTTGTTTGA ATGGTGTTGTCAGAGGAGGAAATCACCAGACTCTTTAGAGTCCGGAAAACTGTATTGCAGATGTTGAAAGACAGAGGCTACTTTGTTGGAGACTTCGAGCTTGATATGTCAAGAGGACAATTTAAGCATAAGTTCGGCGAGAGCATGAAAAGAGAAGATCTTGTTATCAATAAATCCATGAGAAATAATAGCTCTGACCAGATATATATTTTCTTTCCTGAAGAGCCGAAGGTTGGTATCAAGACATTGGATACTTATAAAAAACGTATGAAATCAGAGAATGTTTTTAGAGCAATATTGGTTGTTCAACAGAACTTGACCCCCTTTGCTCGTACTTCTATTGGCGAAATATCCTCTAAAGTCCATTTGGAGGTTTTCCAGGAAGCAGAATTGATGGTTAACATTAAAAATCATGTTCTCATTCCCGAGCACGTGTCTCTGACAAATGAAGAGAAGAAGACGTTGTTGGAGAGGTATACAGTGAAAGAAACACAACTACCTCGCATTCAGGTTTCCGATCCAATTGCTAGATATTATGGGCTGAAGCGTGGACAAGTAGTAAAGATCATCCGACCAAGTGAAACTGCAGGAAGATATGTGACTTATAGATATGTTGTTTGA MVLSEEEITRLFRVRKTVLQMLKDRGYFVGDFELDMSRGQFKHKFGESMKREDLVINKSMRNNSSDQIYIFFPEEPKVGIKTLDTYKKRMKSENVFRAILVVQQNLTPFARTSIGEISSKVHLEVFQEAELMVNIKNHVLIPEHVSLTNEEKKTLLERYTVKETQLPRIQVSDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYVV Homology
BLAST of HG10021534 vs. NCBI nr
Match: XP_022991826.1 (DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita maxima] >XP_023547519.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 359.0 bits (920), Expect = 2.7e-95 Identity = 179/206 (86.89%), Postives = 195/206 (94.66%), Query Frame = 0
BLAST of HG10021534 vs. NCBI nr
Match: XP_018829461.1 (DNA-directed RNA polymerases II and IV subunit 5A-like [Juglans regia] >XP_018829463.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Juglans regia] >XP_018829464.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Juglans regia] >XP_041001822.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Juglans microcarpa x Juglans regia] >XP_041001823.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Juglans microcarpa x Juglans regia] >XP_041001824.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Juglans microcarpa x Juglans regia] >KAF5451447.1 hypothetical protein F2P56_026555 [Juglans regia]) HSP 1 Score: 358.6 bits (919), Expect = 3.6e-95 Identity = 178/206 (86.41%), Postives = 196/206 (95.15%), Query Frame = 0
BLAST of HG10021534 vs. NCBI nr
Match: XP_022953770.1 (DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita moschata]) HSP 1 Score: 358.6 bits (919), Expect = 3.6e-95 Identity = 179/206 (86.89%), Postives = 195/206 (94.66%), Query Frame = 0
BLAST of HG10021534 vs. NCBI nr
Match: XP_022955185.1 (DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita moschata] >XP_022994897.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita maxima]) HSP 1 Score: 357.5 bits (916), Expect = 8.0e-95 Identity = 178/206 (86.41%), Postives = 196/206 (95.15%), Query Frame = 0
BLAST of HG10021534 vs. NCBI nr
Match: XP_022959553.1 (DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita moschata] >XP_022959554.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita moschata] >XP_022959555.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita moschata] >XP_023004795.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita maxima] >XP_023004796.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita maxima] >XP_023004797.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita maxima] >XP_023513561.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita pepo subsp. pepo] >XP_023513563.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 357.5 bits (916), Expect = 8.0e-95 Identity = 180/206 (87.38%), Postives = 196/206 (95.15%), Query Frame = 0
BLAST of HG10021534 vs. ExPASy Swiss-Prot
Match: O81098 (DNA-directed RNA polymerases II and IV subunit 5A OS=Arabidopsis thaliana OX=3702 GN=NRPB5A PE=1 SV=1) HSP 1 Score: 313.2 bits (801), Expect = 2.3e-84 Identity = 156/205 (76.10%), Postives = 182/205 (88.78%), Query Frame = 0
BLAST of HG10021534 vs. ExPASy Swiss-Prot
Match: Q80UW8 (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Mus musculus OX=10090 GN=Polr2e PE=1 SV=1) HSP 1 Score: 221.1 bits (562), Expect = 1.2e-56 Identity = 109/206 (52.91%), Postives = 152/206 (73.79%), Query Frame = 0
BLAST of HG10021534 vs. ExPASy Swiss-Prot
Match: B0BNE2 (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Rattus norvegicus OX=10116 GN=Polr2e PE=2 SV=1) HSP 1 Score: 221.1 bits (562), Expect = 1.2e-56 Identity = 109/206 (52.91%), Postives = 152/206 (73.79%), Query Frame = 0
BLAST of HG10021534 vs. ExPASy Swiss-Prot
Match: Q5R587 (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Pongo abelii OX=9601 GN=POLR2E PE=2 SV=1) HSP 1 Score: 219.5 bits (558), Expect = 3.4e-56 Identity = 108/206 (52.43%), Postives = 151/206 (73.30%), Query Frame = 0
BLAST of HG10021534 vs. ExPASy Swiss-Prot
Match: A8XGH1 (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Caenorhabditis briggsae OX=6238 GN=rpb-5 PE=3 SV=1) HSP 1 Score: 219.2 bits (557), Expect = 4.4e-56 Identity = 116/211 (54.98%), Postives = 150/211 (71.09%), Query Frame = 0
BLAST of HG10021534 vs. ExPASy TrEMBL
Match: A0A6J1JRV4 (DNA-directed RNA polymerases II and IV subunit 5A-like OS=Cucurbita maxima OX=3661 GN=LOC111488357 PE=3 SV=1) HSP 1 Score: 359.0 bits (920), Expect = 1.3e-95 Identity = 179/206 (86.89%), Postives = 195/206 (94.66%), Query Frame = 0
BLAST of HG10021534 vs. ExPASy TrEMBL
Match: A0A2I4FCU5 (DNA-directed RNA polymerases II and IV subunit 5A-like OS=Juglans regia OX=51240 GN=LOC108997575 PE=3 SV=1) HSP 1 Score: 358.6 bits (919), Expect = 1.7e-95 Identity = 178/206 (86.41%), Postives = 196/206 (95.15%), Query Frame = 0
BLAST of HG10021534 vs. ExPASy TrEMBL
Match: A0A6J1GQK9 (DNA-directed RNA polymerases II and IV subunit 5A-like OS=Cucurbita moschata OX=3662 GN=LOC111456196 PE=3 SV=1) HSP 1 Score: 358.6 bits (919), Expect = 1.7e-95 Identity = 179/206 (86.89%), Postives = 195/206 (94.66%), Query Frame = 0
BLAST of HG10021534 vs. ExPASy TrEMBL
Match: A0A6J1KT45 (DNA-directed RNA polymerases II and IV subunit 5A-like OS=Cucurbita maxima OX=3661 GN=LOC111497988 PE=3 SV=1) HSP 1 Score: 357.5 bits (916), Expect = 3.9e-95 Identity = 180/206 (87.38%), Postives = 196/206 (95.15%), Query Frame = 0
BLAST of HG10021534 vs. ExPASy TrEMBL
Match: A0A6J1H699 (DNA-directed RNA polymerases II and IV subunit 5A-like OS=Cucurbita moschata OX=3662 GN=LOC111460591 PE=3 SV=1) HSP 1 Score: 357.5 bits (916), Expect = 3.9e-95 Identity = 180/206 (87.38%), Postives = 196/206 (95.15%), Query Frame = 0
BLAST of HG10021534 vs. TAIR 10
Match: AT3G22320.1 (Eukaryotic rpb5 RNA polymerase subunit family protein ) HSP 1 Score: 313.2 bits (801), Expect = 1.6e-85 Identity = 156/205 (76.10%), Postives = 182/205 (88.78%), Query Frame = 0
BLAST of HG10021534 vs. TAIR 10
Match: AT5G57980.1 (RNA polymerase II fifth largest subunit, C ) HSP 1 Score: 180.3 bits (456), Expect = 1.6e-45 Identity = 94/206 (45.63%), Postives = 143/206 (69.42%), Query Frame = 0
BLAST of HG10021534 vs. TAIR 10
Match: AT2G41340.1 (RNA polymerase II fifth largest subunit, D ) HSP 1 Score: 126.3 bits (316), Expect = 2.8e-29 Identity = 75/203 (36.95%), Postives = 123/203 (60.59%), Query Frame = 0
BLAST of HG10021534 vs. TAIR 10
Match: AT3G57080.1 (Eukaryotic rpb5 RNA polymerase subunit family protein ) HSP 1 Score: 124.0 bits (310), Expect = 1.4e-28 Identity = 78/204 (38.24%), Postives = 118/204 (57.84%), Query Frame = 0
BLAST of HG10021534 vs. TAIR 10
Match: AT3G54490.1 (RNA polymerase II fifth largest subunit, E ) HSP 1 Score: 110.9 bits (276), Expect = 1.2e-24 Identity = 67/201 (33.33%), Postives = 109/201 (54.23%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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