HG10021505 (gene) Bottle gourd (Hangzhou Gourd) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGTATTCTGTCGTTTTTGATCTAGAATATAGACTTAAAAGGAATTTCCGAGTGATGTAGATCGTTTTTTTGTGATTTTAGGAGCGATTGCTGCTTCAATTTGCAGATTAGGGGAAGATTGCTTTTCTTATGGTGAACGTTTTGAAATTTGGACTCTTGATTACCGGTGGATATGAGCTTCTTCACGTGATTCTTTTGAGTAATTAAGAAGTGTGAAAGACAGTCTTAAATTCATTTGCCGGTGGGTATCTCTCTTATTTACTGCCACTTTAATTCTAAACATTTGGGGTTTGTGGGTGGTTTGAAAAATTGGGAGAATGGAGCATCGTGAGAGTTTGGTCGTGGCTCTTCTCATGGTCCAGCTGAGGAAGATGATGTTGAAGATTTTCGAAGTTGTTGTGAAGATCACGAAGTATGGAAAGAGACTGAGGATGCAGTGGAAGAAGAGTCCGAGGAGGATCTTGATGAGTTTTCGGTGAAAATGTTCTTTAAGGGCGTTTCTATAGCTGAGATTGGTGACCCTGCTTCTGGTCTTTCTGGTATTGGAGTATTCATGGAAAAATCAGGGAAAATCCCTTTTGTTCAGGTCCAGAAAAGCTTGACTTTTATGTTGATGAGTTAGTTGCTGATTATTTAGCTCTAATGGATGGTCTGGTGGAGGCCATGCAGAATGACATCCACCGTATTCGAGCTTTCACCGACTCTGATCTGTTATATAAACAGGTTATTACTTCCTCGACCTACCTAAATTTGCTTGTTATGGTATATGATAATTATCATTTTTTTTCTTCTTTTTGTTCCTTTCTGGAAGTCTCTTATATGTCAAGGTAATGTGAATGTTTGACAGATAACAAATGAAGAGGAGCCTGAAATTCCACTTCTTGTAGCTCTGAAGAAAGGATTCTGGAACATGCTAGCAATTTTGAAGCCTTTTCCCTGAACCTTTCTTCAAGTACTGATCTTGAGCAGCCACTTCATCTTGCCAAAGTGGCTATCGGGGTTCTTTCTTGTCCGCAAAAAGGAGATAAATCGGTTGAAAATTGTTCTTTGTTGTGACAATAAGCCATCTGCTATGATGGTTGCATTAAAGTGTTGTCACAAGTTCTGCTCATTGTATGAAGACTTATGTGATGGAAAAGTAGGTGCATCTCAAGTTCCCATTAGATGCCCTCAGTTGAGATGCAAATATTACATCACAAGCAATGAGTTTAAATCTTTTCTCCCCTGACTTTATATGAATCATTAGAGAATACTTAGCAGAAGCAAATATTCACTCGGATAGAATTTACTGCCCTTTTCCAAATTGTTCTGTCCTGTTAGACCCCAGTGAATGTTTGTCAGCTAGGGCAAGTTCATCAAGTCAATCAGATAATAGCTGTATTGAATGTCCAGTTTGTCAGAGATTTATCTGTGTTGAGTGTCAAGTTCCTTGGCACTCATCAATGAGCTGCGAAGAATTTCAGAACGTCCCATTAGAGGAGAGAGACACTGCAGATATTACCTTACATCGTCTTGCACAAAACAAAAGGTGGAGGCGTTGCCAGGAGTGTCATAGGATGATTGAATTGACTCAAGGTTGCTACCATATGACATGCTGGTAAAGCTACTTCCTTCAAATCTCTTTATTTATGTTAACCTTTTTGTTTGTTAGATATTGTGGAAACACCGGTGGTCCGGCATCATCATAAATATTATCACAATTGTAGTGTGGGATGTTAGATTTTTTTAGGATTGGGTTGTAGGTTGTTGAGAAACTAAAATTTAGATGCACTTTATATATGCTTATGTGGATAATCAAAAGGCATGGTGTACGAATAGAAGCTCCTTCTCGTTTTTAATATCTCTGCTTTCTGCTAGACTAGATCTTTTATTCTCTTACAATTTTTTCAGCTGCCATCGTTTACTGATTGAGTCTATCTCCTTCAGAACTACTGTTTATCACGAAGTCTACCGGTTACTGAAGTCCATGTTTCTAAATTTCACCTATTAAGAATCATAAATCCACAGAACAATTACATGTTGGAATTATTTCTCTAGTCTACACAATTCAAATGCAAACGACATAAACTCAAATCCTCACGTCAATGCTACCTAACCCTAGTTATTGAAATTGTGAGGCAAATGTTCCCATAGAGCTTTACCATTATGTGAATGCAATGCCTATATTCTAGGAAAAATATAATTTGGTGCTATTTTTATATGTTATATCAGCCTTATGGTTAATGTGATGAGCATGATTGTTGTATATATCATAAGTATATCTAACTTATTTGATGAAATAGAATGTGGGTAAACAATAGGAAGCATGTAAAATGTCATTTGCTTCTTGTTCATACAACAACGATTACAGCCTTTTTAGGGATTTCTCTAGATATGGAACACCTCCACTTAAATTAATGATGGTGTGAATACATTAATAGTTGTTGTGGAGAACAGTGGTAAAAGAGTGGTTGATGAAATATTAGCTTAAATTTACATGTCTCTGCTTATCTTGTATTGTTTTCATATCTTTGGGTGTTGAATATGATGAAAGGGATTTTCTTTTTTCTTCTTTTTTGCTTTCTTTTGTGTTTAGGACTTCCTGGCTTTTTCGTTTAATCTTGCATTCAAACTCTTATGTAAGAGTCTAGTCTATTAAGCACGCTATTATTACATCAACCAACATTTGTGCACACTGTATTCTTGTTCCCATGGAGGCGAAATATTAGTCACCATAATATTAACTTCGCTTATAAGAACTTATTGGTGTGTGATAGCTTATGAGACTTTGCTGATTGGTTCTTGTGTAATAGCTTATTGGCAAATAATATTTATTATGTAATTGTTTCAAGAAGTACCTTCATGCATTTCTCCTGCTTGTTTGTTAGTTGTGAATCTAACCTGCCATAAAACTCTCATCTCTTTCTACCAAGCTAGAGCTGTCATACTATTTAATTGCACCCATTCTCTTAGTAGGTTCTAAAGTTGAGATCCCAACACTTGGTTGGATGATGAACCTAAGGGCCTTTATTCCAAACCCATTGATTTATATCTTTCTTCATTTAGTGACTACTACTTCTGTGTGTGTGTTTGGCGAATTGAGATCTTCGAACGTGCACGAACTGGCACAAATTATACATCTCTATTGCCAGGCAAATGAGATTCAATATTTGCATGGAAAAGTTTTATGAACACGATCTACTAGTTGGCAATACTTGGTTTTGTAGTAAGCTAGTTGGTGCAGGGCTTTATGTATGACTTTTTCTTTGATGTTTATACTGCTTTGCTTGACATGCTTACAGGTGTGGCCATGAATTCTGCTATTCTTGTGGGTTGAGTATCGATGGGCAACAGACCTGCCAATGCGCATTTTGGGACGAAGACGATTCTGAGAACCTGGTCACCCACTCTGTCCAAGAATCCGAGCAGTGGGCATGGGAGACTTTTAATTCCCTCCCCATGATTATGGATGCATACTCAGAGCAAGAGAGGTCACAAATAGCACTAATTCAACGATTCCTCGCTGGGGGATTTAGTCTGAGCGACCACCAACCATATCAATCTCCACCACGGTGTACAGACTCTTATGTCGACACTATGAAGGACATACACCAACTTCCTTGGCTCGAGGTTCGTTTCTGTGATAAGCGATAG ATGGCTGAGGAAGATGATGTTGAAGATTTTCGAAGTTGTTGTGAAGATCACGAAGTATGGAAAGAGACTGAGGATGCAGTGGAAGAAGAGTCCGAGGAGGATCTTGATGAGTTTTCGGTGAAAATGTTCTTTAAGGGCGTTTCTATAGCTGAGATTGGTGACCCTGCTTCTGGTCTTTCTGCTCTAATGGATGGTCTGGTGGAGGCCATGCAGAATGACATCCACCGTATTCGAGCTTTCACCGACTCTGATCTGTTATATAAACAGAGATTTATCTGTGTTGAGTGTCAAGTTCCTTGGCACTCATCAATGAGCTGCGAAGAATTTCAGAACGTCCCATTAGAGGAGAGAGACACTGCAGATATTACCTTACATCGTCTTGCACAAAACAAAAGGTGGAGGCGTTGCCAGGAGTGTCATAGGATGATTGAATTGACTCAAGGTTGCTACCATATGACATGCTGGTGTGGCCATGAATTCTGCTATTCTTGTGGGTTGAGTATCGATGGGCAACAGACCTGCCAATGCGCATTTTGGGACGAAGACGATTCTGAGAACCTGGTCACCCACTCTGTCCAAGAATCCGAGCAGTGGGCATGGGAGACTTTTAATTCCCTCCCCATGATTATGGATGCATACTCAGAGCAAGAGAGGTCACAAATAGCACTAATTCAACGATTCCTCGCTGGGGGATTTAGTCTGAGCGACCACCAACCATATCAATCTCCACCACGGTGTACAGACTCTTATGTCGACACTATGAAGGACATACACCAACTTCCTTGGCTCGAGGTTCGTTTCTGTGATAAGCGATAG ATGGCTGAGGAAGATGATGTTGAAGATTTTCGAAGTTGTTGTGAAGATCACGAAGTATGGAAAGAGACTGAGGATGCAGTGGAAGAAGAGTCCGAGGAGGATCTTGATGAGTTTTCGGTGAAAATGTTCTTTAAGGGCGTTTCTATAGCTGAGATTGGTGACCCTGCTTCTGGTCTTTCTGCTCTAATGGATGGTCTGGTGGAGGCCATGCAGAATGACATCCACCGTATTCGAGCTTTCACCGACTCTGATCTGTTATATAAACAGAGATTTATCTGTGTTGAGTGTCAAGTTCCTTGGCACTCATCAATGAGCTGCGAAGAATTTCAGAACGTCCCATTAGAGGAGAGAGACACTGCAGATATTACCTTACATCGTCTTGCACAAAACAAAAGGTGGAGGCGTTGCCAGGAGTGTCATAGGATGATTGAATTGACTCAAGGTTGCTACCATATGACATGCTGGTGTGGCCATGAATTCTGCTATTCTTGTGGGTTGAGTATCGATGGGCAACAGACCTGCCAATGCGCATTTTGGGACGAAGACGATTCTGAGAACCTGGTCACCCACTCTGTCCAAGAATCCGAGCAGTGGGCATGGGAGACTTTTAATTCCCTCCCCATGATTATGGATGCATACTCAGAGCAAGAGAGGTCACAAATAGCACTAATTCAACGATTCCTCGCTGGGGGATTTAGTCTGAGCGACCACCAACCATATCAATCTCCACCACGGTGTACAGACTCTTATGTCGACACTATGAAGGACATACACCAACTTCCTTGGCTCGAGGTTCGTTTCTGTGATAAGCGATAG MAEEDDVEDFRSCCEDHEVWKETEDAVEEESEEDLDEFSVKMFFKGVSIAEIGDPASGLSALMDGLVEAMQNDIHRIRAFTDSDLLYKQRFICVECQVPWHSSMSCEEFQNVPLEERDTADITLHRLAQNKRWRRCQECHRMIELTQGCYHMTCWCGHEFCYSCGLSIDGQQTCQCAFWDEDDSENLVTHSVQESEQWAWETFNSLPMIMDAYSEQERSQIALIQRFLAGGFSLSDHQPYQSPPRCTDSYVDTMKDIHQLPWLEVRFCDKR Homology
BLAST of HG10021505 vs. NCBI nr
Match: XP_008459101.1 (PREDICTED: E3 ubiquitin-protein ligase arih1 [Cucumis melo] >XP_008459102.1 PREDICTED: E3 ubiquitin-protein ligase arih1 [Cucumis melo] >KAA0043320.1 E3 ubiquitin-protein ligase arih1 [Cucumis melo var. makuwa] >TYK29385.1 E3 ubiquitin-protein ligase arih1 [Cucumis melo var. makuwa]) HSP 1 Score: 439.9 bits (1130), Expect = 1.6e-119 Identity = 251/484 (51.86%), Postives = 259/484 (53.51%), Query Frame = 0
BLAST of HG10021505 vs. NCBI nr
Match: XP_004145453.1 (E3 ubiquitin-protein ligase arih1 [Cucumis sativus] >XP_011660321.1 E3 ubiquitin-protein ligase arih1 [Cucumis sativus] >KGN66894.1 hypothetical protein Csa_007170 [Cucumis sativus]) HSP 1 Score: 432.6 bits (1111), Expect = 2.6e-117 Identity = 249/484 (51.45%), Postives = 256/484 (52.89%), Query Frame = 0
BLAST of HG10021505 vs. NCBI nr
Match: XP_038894440.1 (uncharacterized protein LOC120083025 [Benincasa hispida]) HSP 1 Score: 428.3 bits (1100), Expect = 4.8e-116 Identity = 248/484 (51.24%), Postives = 256/484 (52.89%), Query Frame = 0
BLAST of HG10021505 vs. NCBI nr
Match: XP_023519477.1 (E3 ubiquitin-protein ligase arih1-like isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 401.0 bits (1029), Expect = 8.3e-108 Identity = 238/488 (48.77%), Postives = 250/488 (51.23%), Query Frame = 0
BLAST of HG10021505 vs. NCBI nr
Match: XP_022927282.1 (ATP-dependent RNA helicase DEAH12, chloroplastic-like isoform X1 [Cucurbita moschata]) HSP 1 Score: 397.9 bits (1021), Expect = 7.0e-107 Identity = 236/488 (48.36%), Postives = 248/488 (50.82%), Query Frame = 0
BLAST of HG10021505 vs. ExPASy Swiss-Prot
Match: P58283 (E3 ubiquitin-protein ligase RNF216 OS=Mus musculus OX=10090 GN=Rnf216 PE=1 SV=3) HSP 1 Score: 58.2 bits (139), Expect = 1.7e-07 Identity = 46/166 (27.71%), Postives = 73/166 (43.98%), Query Frame = 0
BLAST of HG10021505 vs. ExPASy Swiss-Prot
Match: F4KGU4 (ATP-dependent RNA helicase DEAH12, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g10370 PE=3 SV=1) HSP 1 Score: 57.4 bits (137), Expect = 2.9e-07 Identity = 24/73 (32.88%), Postives = 38/73 (52.05%), Query Frame = 0
BLAST of HG10021505 vs. ExPASy Swiss-Prot
Match: Q9NWF9 (E3 ubiquitin-protein ligase RNF216 OS=Homo sapiens OX=9606 GN=RNF216 PE=1 SV=3) HSP 1 Score: 57.0 bits (136), Expect = 3.8e-07 Identity = 38/128 (29.69%), Postives = 62/128 (48.44%), Query Frame = 0
BLAST of HG10021505 vs. ExPASy Swiss-Prot
Match: Q8TC41 (Probable E3 ubiquitin-protein ligase RNF217 OS=Homo sapiens OX=9606 GN=RNF217 PE=2 SV=4) HSP 1 Score: 54.7 bits (130), Expect = 1.9e-06 Identity = 26/74 (35.14%), Postives = 38/74 (51.35%), Query Frame = 0
BLAST of HG10021505 vs. ExPASy Swiss-Prot
Match: D3YYI7 (Probable E3 ubiquitin-protein ligase RNF217 OS=Mus musculus OX=10090 GN=Rnf217 PE=3 SV=2) HSP 1 Score: 54.7 bits (130), Expect = 1.9e-06 Identity = 26/74 (35.14%), Postives = 38/74 (51.35%), Query Frame = 0
BLAST of HG10021505 vs. ExPASy TrEMBL
Match: A0A1S3C9E4 (E3 ubiquitin-protein ligase arih1 OS=Cucumis melo OX=3656 GN=LOC103498311 PE=3 SV=1) HSP 1 Score: 439.9 bits (1130), Expect = 7.8e-120 Identity = 251/484 (51.86%), Postives = 259/484 (53.51%), Query Frame = 0
BLAST of HG10021505 vs. ExPASy TrEMBL
Match: A0A5D3E1X1 (E3 ubiquitin-protein ligase arih1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold129G001170 PE=3 SV=1) HSP 1 Score: 439.9 bits (1130), Expect = 7.8e-120 Identity = 251/484 (51.86%), Postives = 259/484 (53.51%), Query Frame = 0
BLAST of HG10021505 vs. ExPASy TrEMBL
Match: A0A0A0M0W5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G706610 PE=3 SV=1) HSP 1 Score: 432.6 bits (1111), Expect = 1.2e-117 Identity = 249/484 (51.45%), Postives = 256/484 (52.89%), Query Frame = 0
BLAST of HG10021505 vs. ExPASy TrEMBL
Match: A0A6J1EGQ6 (ATP-dependent RNA helicase DEAH12, chloroplastic-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111434167 PE=3 SV=1) HSP 1 Score: 397.9 bits (1021), Expect = 3.4e-107 Identity = 236/488 (48.36%), Postives = 248/488 (50.82%), Query Frame = 0
BLAST of HG10021505 vs. ExPASy TrEMBL
Match: A0A6J1EKK2 (probable E3 ubiquitin-protein ligase rbrA isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111434167 PE=3 SV=1) HSP 1 Score: 393.3 bits (1009), Expect = 8.4e-106 Identity = 228/460 (49.57%), Postives = 242/460 (52.61%), Query Frame = 0
BLAST of HG10021505 vs. TAIR 10
Match: AT4G19670.1 (RING/U-box superfamily protein ) HSP 1 Score: 263.5 bits (672), Expect = 1.9e-70 Identity = 127/185 (68.65%), Postives = 150/185 (81.08%), Query Frame = 0
HSP 2 Score: 61.6 bits (148), Expect = 1.1e-09 Identity = 40/78 (51.28%), Postives = 49/78 (62.82%), Query Frame = 0
BLAST of HG10021505 vs. TAIR 10
Match: AT4G19670.2 (RING/U-box superfamily protein ) HSP 1 Score: 263.5 bits (672), Expect = 1.9e-70 Identity = 127/185 (68.65%), Postives = 150/185 (81.08%), Query Frame = 0
HSP 2 Score: 61.6 bits (148), Expect = 1.1e-09 Identity = 40/78 (51.28%), Postives = 49/78 (62.82%), Query Frame = 0
BLAST of HG10021505 vs. TAIR 10
Match: AT5G60250.1 (zinc finger (C3HC4-type RING finger) family protein ) HSP 1 Score: 101.7 bits (252), Expect = 9.7e-22 Identity = 45/93 (48.39%), Postives = 61/93 (65.59%), Query Frame = 0
BLAST of HG10021505 vs. TAIR 10
Match: AT3G45470.1 (IBR domain containing protein ) HSP 1 Score: 99.4 bits (246), Expect = 4.8e-21 Identity = 43/105 (40.95%), Postives = 65/105 (61.90%), Query Frame = 0
BLAST of HG10021505 vs. TAIR 10
Match: AT5G37560.1 (RING/U-box superfamily protein ) HSP 1 Score: 96.3 bits (238), Expect = 4.1e-20 Identity = 41/93 (44.09%), Postives = 57/93 (61.29%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|