HG10021499 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10021499
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionAAI domain-containing protein
LocationChr05: 10091248 .. 10091540 (-)
RNA-Seq ExpressionHG10021499
SyntenyHG10021499
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATAAATTTTATTCCACTAAAGGTCTATGCCTTTTGGTGATTGTGATGGTGGTGGTTGTCAATGAAACTCAACTGGCAGAGACAGTGAAGTGCGATCCAAAGGAGTTAAGACCATGTCTTTTGGCCTTCACAATGTCGGTGGAGCCATATCAACTTGTTGCAACAAGGTGAAAGAGCATAGACCATGCTATTGTGGATACAAGAAAAATCCAAAAATTCAACCTTATTTACAATATGATGCCACAAAAAATATAATTTTTAGTTGTGGCGTTGCCATCCCTGCTTGCTAA

mRNA sequence

ATGAATAAATTTTATTCCACTAAAGGTCTATGCCTTTTGGTGATTGTGATGGTGGTGGTTGTCAATGAAACTCAACTGGCAGAGACAGTGAAGTGCGATCCAAAGGAGTTAAGACCATGTCTTTTGGCCTTCACAATGTCGGTGGAGCCATATCAACTTGTTGCAACAAGTTGTGGCGTTGCCATCCCTGCTTGCTAA

Coding sequence (CDS)

ATGAATAAATTTTATTCCACTAAAGGTCTATGCCTTTTGGTGATTGTGATGGTGGTGGTTGTCAATGAAACTCAACTGGCAGAGACAGTGAAGTGCGATCCAAAGGAGTTAAGACCATGTCTTTTGGCCTTCACAATGTCGGTGGAGCCATATCAACTTGTTGCAACAAGTTGTGGCGTTGCCATCCCTGCTTGCTAA

Protein sequence

MNKFYSTKGLCLLVIVMVVVVNETQLAETVKCDPKELRPCLLAFTMSVEPYQLVATSCGVAIPAC
Homology
[Close]
BLAST of HG10021499 vs. NCBI nr
Match: KGN66906.1 (hypothetical protein Csa_006987 [Cucumis sativus])

HSP 1 Score: 56.6 bits (135), Expect = 9.2e-05
Identity = 32/82 (39.02%), Postives = 42/82 (51.22%), Query Frame = 0 

Query: 16 VMVVVVNETQLAETVKCDPKELRPCLLAFTMSVEP------------------------- 66
          ++VVV+NETQ+++ VKCDP ELRPC L+FTMS+EP                         
Sbjct: 6  LLVVVINETQVSKAVKCDPGELRPCHLSFTMSMEPSSACCKKVLQHRTCYCEYSKNPKTQ 65

[Close]
BLAST of HG10021499 vs. ExPASy TrEMBL
Match: A0A0A0M3W7 (AAI domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G711160 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 4.4e-05
Identity = 32/82 (39.02%), Postives = 42/82 (51.22%), Query Frame = 0 

Query: 16 VMVVVVNETQLAETVKCDPKELRPCLLAFTMSVEP------------------------- 66
          ++VVV+NETQ+++ VKCDP ELRPC L+FTMS+EP                         
Sbjct: 6  LLVVVINETQVSKAVKCDPGELRPCHLSFTMSMEPSSACCKKVLQHRTCYCEYSKNPKTQ 65

The following BLAST results are available for this feature:
BLAST of HG10021499 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN66906.19.2e-0539.02hypothetical protein Csa_006987 [Cucumis sativus][more]
BLAST of HG10021499 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10021499 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0M3W74.4e-0539.02AAI domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G711160 PE=4 SV... [more]
BLAST of HG10021499 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10021499.1HG10021499.1mRNA