HG10021469 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10021469
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like
Location	Chr05: 9630524 .. 9631066 (+)
RNA-Seq Expression	HG10021469
Synteny	HG10021469

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAGCCGCCGTAGCAGCCGCCGCCGCCGCCGCCCTCGGCCGTCGGAACTCTTCCTCCAATACCACCACCACCACCTCCTCCACCCTTTCCCCTTCCAACTCTTTCTACTCCCAGTATTACCCGTCGCTATCCGTGTCGGTCCGACCAACGCCATTGGTCAGCCGGTACGAGTGCCTGAAACGCCGTGACTGGAATAGATTCCGGCAGTACCTGAGAAACCGCTGCCCGACATTAAGCCTCGCCGGCTGCAGCGGAGCGAATGTCGTCGAGTTCCTCTGTTACCTCGACGAATTAGGGCAGACTAAAGTTCACGCCACCACCTGCCCAAATTTCGGCCACCGCTACTCGGTGGATTCTTACTGCAATTGCCCAACCCAACAGCCGTGGACTACCCTCGTCGCTCTCATCGGCCGCCTCCGCGTCGCCTTCGAGGAAAACGGCGGAAATCCAGTGACCAACCCATTTAACACCGTCGACGTGAAAGTTTACCTCAACGATGTTAAGGACTCTCAAGAAAGATCCCGAGGAATCGATCGGTAA

mRNA sequence

ATGTCAGCCGCCGTAGCAGCCGCCGCCGCCGCCGCCCTCGGCCGTCGGAACTCTTCCTCCAATACCACCACCACCACCTCCTCCACCCTTTCCCCTTCCAACTCTTTCTACTCCCAGTATTACCCGTCGCTATCCGTGTCGGTCCGACCAACGCCATTGGTCAGCCGGTACGAGTGCCTGAAACGCCGTGACTGGAATAGATTCCGGCAGTACCTGAGAAACCGCTGCCCGACATTAAGCCTCGCCGGCTGCAGCGGAGCGAATGTCGTCGAGTTCCTCTGTTACCTCGACGAATTAGGGCAGACTAAAGTTCACGCCACCACCTGCCCAAATTTCGGCCACCGCTACTCGGTGGATTCTTACTGCAATTGCCCAACCCAACAGCCGTGGACTACCCTCGTCGCTCTCATCGGCCGCCTCCGCGTCGCCTTCGAGGAAAACGGCGGAAATCCAGTGACCAACCCATTTAACACCGTCGACGTGAAAGTTTACCTCAACGATGTTAAGGACTCTCAAGAAAGATCCCGAGGAATCGATCGGTAA

Coding sequence (CDS)

ATGTCAGCCGCCGTAGCAGCCGCCGCCGCCGCCGCCCTCGGCCGTCGGAACTCTTCCTCCAATACCACCACCACCACCTCCTCCACCCTTTCCCCTTCCAACTCTTTCTACTCCCAGTATTACCCGTCGCTATCCGTGTCGGTCCGACCAACGCCATTGGTCAGCCGGTACGAGTGCCTGAAACGCCGTGACTGGAATAGATTCCGGCAGTACCTGAGAAACCGCTGCCCGACATTAAGCCTCGCCGGCTGCAGCGGAGCGAATGTCGTCGAGTTCCTCTGTTACCTCGACGAATTAGGGCAGACTAAAGTTCACGCCACCACCTGCCCAAATTTCGGCCACCGCTACTCGGTGGATTCTTACTGCAATTGCCCAACCCAACAGCCGTGGACTACCCTCGTCGCTCTCATCGGCCGCCTCCGCGTCGCCTTCGAGGAAAACGGCGGAAATCCAGTGACCAACCCATTTAACACCGTCGACGTGAAAGTTTACCTCAACGATGTTAAGGACTCTCAAGAAAGATCCCGAGGAATCGATCGGTAA

Protein sequence

MSAAVAAAAAAALGRRNSSSNTTTTTSSTLSPSNSFYSQYYPSLSVSVRPTPLVSRYECLKRRDWNRFRQYLRNRCPTLSLAGCSGANVVEFLCYLDELGQTKVHATTCPNFGHRYSVDSYCNCPTQQPWTTLVALIGRLRVAFEENGGNPVTNPFNTVDVKVYLNDVKDSQERSRGIDR

Homology

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BLAST of HG10021469 vs. NCBI nr
Match: XP_038894791.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Benincasa hispida])

HSP 1 Score: 322.4 bits (825), Expect = 2.5e-84
Identity = 160/180 (88.89%), Postives = 166/180 (92.22%), Query Frame = 0


Query: 1   MSAAVAAAAAAALGRRNSSSNTTTTTSSTLSPSNSFYSQYYPSLSVSVRPTPLVSRYECL 60
           MSAAVAAAAAAAL RR+SS   TTTT+ST SPS SFY+QYYPS+SVSVRP PL SRYECL
Sbjct: 1   MSAAVAAAAAAALSRRSSS---TTTTTSTRSPSESFYAQYYPSVSVSVRPPPLASRYECL 60

Query: 61  KRRDWNRFRQYLRNRCPTLSLAGCSGANVVEFLCYLDELGQTKVHATTCPNFGHRYSVDS 120
           KRRDWNRFRQYLRNRCPTLSLA CSGANVVEFLCYLDELGQTKVH  TCPNFGH Y VD 
Sbjct: 61  KRRDWNRFRQYLRNRCPTLSLACCSGANVVEFLCYLDELGQTKVHTATCPNFGHLYPVDP 120

Query: 121 YCNCPTQQPWTTLVALIGRLRVAFEENGGNPVTNPFNTVDVKVYLNDVKDSQERSRGIDR 180
           YCNCPTQQPWTTLVALIGRLRVAFEENGGNPVTNPFNTVDVK+YLNDVKDSQ+RSRGIDR
Sbjct: 121 YCNCPTQQPWTTLVALIGRLRVAFEENGGNPVTNPFNTVDVKIYLNDVKDSQDRSRGIDR 177

[Close]

BLAST of HG10021469 vs. NCBI nr
Match: XP_008459123.1 (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Cucumis melo] >KAA0047053.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Cucumis melo var. makuwa] >TYK30589.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Cucumis melo var. makuwa])

HSP 1 Score: 307.8 bits (787), Expect = 6.3e-80
Identity = 154/180 (85.56%), Postives = 161/180 (89.44%), Query Frame = 0


Query: 1   MSAAVAAAAAAALGRRNSSSNTTTTTSSTLSPSNSFYSQYYPSLSVSVRPTPLVSRYECL 60
           MSAAVAAAAAAALGRR SS       +ST S S+SFYS YYPS SVSVRP PL+SRYECL
Sbjct: 1   MSAAVAAAAAAALGRRTSS-------TSTPSSSDSFYSHYYPSASVSVRPPPLLSRYECL 60

Query: 61  KRRDWNRFRQYLRNRCPTLSLAGCSGANVVEFLCYLDELGQTKVHATTCPNFGHRYSVDS 120
           KRRDWNRFRQYLR+RCPTLSLA CSGANVVEFLCYLDELGQ+K+H  TCPNFG RY VD 
Sbjct: 61  KRRDWNRFRQYLRSRCPTLSLACCSGANVVEFLCYLDELGQSKIHGATCPNFGQRYPVDP 120

Query: 121 YCNCPTQQPWTTLVALIGRLRVAFEENGGNPVTNPFNTVDVKVYLNDVKDSQERSRGIDR 180
           YC+CPTQQPWTTLVALIGRLRVAFEENGGNPVTNPFNTVDVKVYLNDVKDSQERSRGIDR
Sbjct: 121 YCDCPTQQPWTTLVALIGRLRVAFEENGGNPVTNPFNTVDVKVYLNDVKDSQERSRGIDR 173

[Close]

BLAST of HG10021469 vs. NCBI nr
Match: XP_004135751.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 [Cucumis sativus] >KGN65964.1 hypothetical protein Csa_023208 [Cucumis sativus])

HSP 1 Score: 293.1 bits (749), Expect = 1.6e-75
Identity = 148/180 (82.22%), Postives = 161/180 (89.44%), Query Frame = 0


Query: 1   MSAAVAAAAAAALGRRNSSSNTTTTTSSTLSPSNSFYSQYYPSLSVSVRPTPLVSRYECL 60
           MSAAVAAAAAAAL RR SSS++++TT  T S S+SFYS YYPS+SVSVRP PLVSRY+CL
Sbjct: 1   MSAAVAAAAAAALSRRTSSSSSSSTT-ITRSSSDSFYSHYYPSVSVSVRPQPLVSRYDCL 60

Query: 61  KRRDWNRFRQYLRNRCPTLSLAGCSGANVVEFLCYLDELGQTKVHATTCPNFGHRYSVDS 120
           KRRDWNRFRQYLR+R PTLSLA CSG+NVVEFL YLD LGQ+K+H  TCP+FGHRY VD 
Sbjct: 61  KRRDWNRFRQYLRSRSPTLSLACCSGSNVVEFLSYLDRLGQSKIHGATCPSFGHRYPVDP 120

Query: 121 YCNCPTQQPWTTLVALIGRLRVAFEENGGNPVTNPFNTVDVKVYLNDVKDSQERSRGIDR 180
           YC+CPTQQPWTTLVALIGRLRVAFEENGGNPVTNPFNTV VKVYLN VKDSQE SRGIDR
Sbjct: 121 YCDCPTQQPWTTLVALIGRLRVAFEENGGNPVTNPFNTVVVKVYLNKVKDSQETSRGIDR 179

[Close]

BLAST of HG10021469 vs. NCBI nr
Match: KAG7019447.1 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 282.3 bits (721), Expect = 2.9e-72
Identity = 138/180 (76.67%), Postives = 157/180 (87.22%), Query Frame = 0


Query: 1   MSAAVAAAAAAALGRRNSSSNTTTTTSSTLSPSNSFYSQYYPSLSVSVRPTPLVSRYECL 60
           MSAAVAAAAAAAL RR+SSS++++TTS+  S S SFYSQYYPS SVSVR  PL SRYEC 
Sbjct: 1   MSAAVAAAAAAALARRSSSSSSSSTTSNR-SSSGSFYSQYYPSPSVSVRQPPLASRYECR 60

Query: 61  KRRDWNRFRQYLRNRCPTLSLAGCSGANVVEFLCYLDELGQTKVHATTCPNFGHRYSVDS 120
           KR DW++FRQYLR+RCPTLSL+ C+GA++VEFLCYLDE G TKVHA TCPNFGHRY VD 
Sbjct: 61  KRLDWSKFRQYLRSRCPTLSLSTCTGADIVEFLCYLDEFGDTKVHADTCPNFGHRYPVDP 120

Query: 121 YCNCPTQQPWTTLVALIGRLRVAFEENGGNPVTNPFNTVDVKVYLNDVKDSQERSRGIDR 180
           YC+CPTQQPW ++  LI RLRVAFEENGGNPVTNPFN VDVK+YL+D+KDSQ RSRGIDR
Sbjct: 121 YCDCPTQQPWNSVAGLISRLRVAFEENGGNPVTNPFNAVDVKIYLDDIKDSQNRSRGIDR 179

[Close]

BLAST of HG10021469 vs. NCBI nr
Match: KAG6583821.1 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 282.3 bits (721), Expect = 2.9e-72
Identity = 138/180 (76.67%), Postives = 157/180 (87.22%), Query Frame = 0


Query: 1   MSAAVAAAAAAALGRRNSSSNTTTTTSSTLSPSNSFYSQYYPSLSVSVRPTPLVSRYECL 60
           MSAAVAAAAAAAL RR+SSS++++TTS+  S S SFYSQYYPS SVSVR  PL SRYEC 
Sbjct: 1   MSAAVAAAAAAALARRSSSSSSSSTTSNR-SSSGSFYSQYYPSPSVSVRQPPLASRYECR 60

Query: 61  KRRDWNRFRQYLRNRCPTLSLAGCSGANVVEFLCYLDELGQTKVHATTCPNFGHRYSVDS 120
           KR DW++FRQYLR+RCPTLSL+ C+GA++VEFLCYLDE G TKVHA TCPNFGHRY VD 
Sbjct: 61  KRLDWSKFRQYLRSRCPTLSLSTCTGADIVEFLCYLDEFGDTKVHADTCPNFGHRYPVDP 120

Query: 121 YCNCPTQQPWTTLVALIGRLRVAFEENGGNPVTNPFNTVDVKVYLNDVKDSQERSRGIDR 180
           YC+CPTQQPW ++  LI RLRVAFEENGGNPVTNPFN VDVK+YL+D+KDSQ RSRGIDR
Sbjct: 121 YCDCPTQQPWNSVAGLISRLRVAFEENGGNPVTNPFNAVDVKIYLDDIKDSQNRSRGIDR 179

[Close]

BLAST of HG10021469 vs. ExPASy Swiss-Prot
Match: Q9LW68 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LSH4 PE=1 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 2.1e-38
Identity = 91/174 (52.30%), Postives = 112/174 (64.37%), Query Frame = 0


Query: 13  LGRRNSSSNT--------TTTTSSTLSPSNSFYSQYYPSLSVSVRPTPLVSRYECLKRRD 72
           +G  N S NT        TTTT+S+ S S+S  S            T  +SRYE  KRRD
Sbjct: 8   MGTTNMSHNTNLMIAAAATTTTTSSSSSSSSGGS-----------GTNQLSRYENQKRRD 67

Query: 73  WNRFRQYLRNRCPTLSLAGCSGANVVEFLCYLDELGQTKVHATTCPNFGHRYSVDSYCNC 132
           WN F QYLRN  P LSL+ CSGA+V+EFL YLD+ G+TKVH   CP FGH  +  + C C
Sbjct: 68  WNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTHLCPFFGHP-NPPAPCAC 127

Query: 133 PTQQPWTTLVALIGRLRVAFEENGGNPVTNPFNTVDVKVYLNDVKDSQERSRGI 179
           P +Q W +L ALIGRLR AFEENGG+P TNPF    V++YL +V+DSQ ++RGI
Sbjct: 128 PLRQAWGSLDALIGRLRAAFEENGGSPETNPFGARAVRLYLREVRDSQAKARGI 169

[Close]

BLAST of HG10021469 vs. ExPASy Swiss-Prot
Match: A2XVI8 (Protein G1-like4 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_16643 PE=3 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 2.8e-38
Identity = 77/137 (56.20%), Postives = 95/137 (69.34%), Query Frame = 0


Query: 42  PSLSVSVRPTPLVSRYECLKRRDWNRFRQYLRNRCPTLSLAGCSGANVVEFLCYLDELGQ 101
           PS+      +P  SRYE  KRRDWN F QYLRN  P LSLA CSGA+V+EFL YLD+ G+
Sbjct: 29  PSMGAGAPQSP--SRYEAQKRRDWNTFGQYLRNHRPPLSLAQCSGAHVLEFLRYLDQFGK 88

Query: 102 TKVHATTCPNFGHRYSVDSYCNCPTQQPWTTLVALIGRLRVAFEENGGNPVTNPFNTVDV 161
           TKVH   CP FGH  S  + C CP +Q W +L AL+GRLR AFEENGG P +NPF    V
Sbjct: 89  TKVHTAACPFFGHP-SPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGRPESNPFAARAV 148

Query: 162 KVYLNDVKDSQERSRGI 179
           ++YL +V++ Q R+RG+
Sbjct: 149 RLYLREVREHQARARGV 162

[Close]

BLAST of HG10021469 vs. ExPASy Swiss-Prot
Match: Q7XRS1 (Protein G1-like4 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L4 PE=1 SV=2)

HSP 1 Score: 159.8 bits (403), Expect = 2.8e-38
Identity = 77/137 (56.20%), Postives = 95/137 (69.34%), Query Frame = 0


Query: 42  PSLSVSVRPTPLVSRYECLKRRDWNRFRQYLRNRCPTLSLAGCSGANVVEFLCYLDELGQ 101
           PS+      +P  SRYE  KRRDWN F QYLRN  P LSLA CSGA+V+EFL YLD+ G+
Sbjct: 29  PSMGAGAPQSP--SRYEAQKRRDWNTFGQYLRNHRPPLSLAQCSGAHVLEFLRYLDQFGK 88

Query: 102 TKVHATTCPNFGHRYSVDSYCNCPTQQPWTTLVALIGRLRVAFEENGGNPVTNPFNTVDV 161
           TKVH   CP FGH  S  + C CP +Q W +L AL+GRLR AFEENGG P +NPF    V
Sbjct: 89  TKVHTAACPFFGHP-SPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGRPESNPFAARAV 148

Query: 162 KVYLNDVKDSQERSRGI 179
           ++YL +V++ Q R+RG+
Sbjct: 149 RLYLREVREHQARARGV 162

[Close]

BLAST of HG10021469 vs. ExPASy Swiss-Prot
Match: Q9LMK2 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 OS=Arabidopsis thaliana OX=3702 GN=LSH6 PE=1 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 2.8e-38
Identity = 77/137 (56.20%), Postives = 97/137 (70.80%), Query Frame = 0


Query: 42  PSLSVSVRPTPLVSRYECLKRRDWNRFRQYLRNRCPTLSLAGCSGANVVEFLCYLDELGQ 101
           PS   S   TP  SRYE  KRRDWN F QYL+N  P L+L+ CSGA+V+EFL YLD+ G+
Sbjct: 19  PSFVSSPPATP--SRYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQFGK 78

Query: 102 TKVHATTCPNFGHRYSVDSYCNCPTQQPWTTLVALIGRLRVAFEENGGNPVTNPFNTVDV 161
           TKVH   CP FGH+    S C+CP +Q W +L ALIGRLR A+EENGG P +NPF    V
Sbjct: 79  TKVHVAACPYFGHQ-QPPSPCSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARAV 138

Query: 162 KVYLNDVKDSQERSRGI 179
           ++YL +V++SQ ++RGI
Sbjct: 139 RIYLREVRESQAKARGI 152

[Close]

BLAST of HG10021469 vs. ExPASy Swiss-Prot
Match: Q7XDD0 (Protein G1-like5 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L5 PE=1 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 1.8e-37
Identity = 73/124 (58.87%), Postives = 90/124 (72.58%), Query Frame = 0


Query: 55  SRYECLKRRDWNRFRQYLRNRCPTLSLAGCSGANVVEFLCYLDELGQTKVHATTCPNFGH 114
           SRYE  KRRDWN F QYLRN  P LSLA CSGA+V+EFL YLD+ G+TKVHA  CP FGH
Sbjct: 39  SRYESQKRRDWNTFGQYLRNHRPPLSLARCSGAHVLEFLRYLDQFGKTKVHAPACPFFGH 98

Query: 115 RYSVDSYCNCPTQQPWTTLVALIGRLRVAFEENGGNPVTNPFNTVDVKVYLNDVKDSQER 174
             +  + C CP +Q W +L AL+GRLR A+EENGG P  NPF    V++YL +V++ Q R
Sbjct: 99  P-APPAPCPCPLRQAWGSLDALVGRLRAAYEENGGRPENNPFGARAVRLYLREVREHQAR 158

Query: 175 SRGI 179
           +RG+
Sbjct: 159 ARGV 161

[Close]

BLAST of HG10021469 vs. ExPASy TrEMBL
Match: A0A5D3E452 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold74574G00010 PE=3 SV=1)

HSP 1 Score: 307.8 bits (787), Expect = 3.1e-80
Identity = 154/180 (85.56%), Postives = 161/180 (89.44%), Query Frame = 0


Query: 1   MSAAVAAAAAAALGRRNSSSNTTTTTSSTLSPSNSFYSQYYPSLSVSVRPTPLVSRYECL 60
           MSAAVAAAAAAALGRR SS       +ST S S+SFYS YYPS SVSVRP PL+SRYECL
Sbjct: 1   MSAAVAAAAAAALGRRTSS-------TSTPSSSDSFYSHYYPSASVSVRPPPLLSRYECL 60

Query: 61  KRRDWNRFRQYLRNRCPTLSLAGCSGANVVEFLCYLDELGQTKVHATTCPNFGHRYSVDS 120
           KRRDWNRFRQYLR+RCPTLSLA CSGANVVEFLCYLDELGQ+K+H  TCPNFG RY VD 
Sbjct: 61  KRRDWNRFRQYLRSRCPTLSLACCSGANVVEFLCYLDELGQSKIHGATCPNFGQRYPVDP 120

Query: 121 YCNCPTQQPWTTLVALIGRLRVAFEENGGNPVTNPFNTVDVKVYLNDVKDSQERSRGIDR 180
           YC+CPTQQPWTTLVALIGRLRVAFEENGGNPVTNPFNTVDVKVYLNDVKDSQERSRGIDR
Sbjct: 121 YCDCPTQQPWTTLVALIGRLRVAFEENGGNPVTNPFNTVDVKVYLNDVKDSQERSRGIDR 173

[Close]

BLAST of HG10021469 vs. ExPASy TrEMBL
Match: A0A1S3C9J9 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like OS=Cucumis melo OX=3656 GN=LOC103498324 PE=3 SV=1)

HSP 1 Score: 307.8 bits (787), Expect = 3.1e-80
Identity = 154/180 (85.56%), Postives = 161/180 (89.44%), Query Frame = 0


Query: 1   MSAAVAAAAAAALGRRNSSSNTTTTTSSTLSPSNSFYSQYYPSLSVSVRPTPLVSRYECL 60
           MSAAVAAAAAAALGRR SS       +ST S S+SFYS YYPS SVSVRP PL+SRYECL
Sbjct: 1   MSAAVAAAAAAALGRRTSS-------TSTPSSSDSFYSHYYPSASVSVRPPPLLSRYECL 60

Query: 61  KRRDWNRFRQYLRNRCPTLSLAGCSGANVVEFLCYLDELGQTKVHATTCPNFGHRYSVDS 120
           KRRDWNRFRQYLR+RCPTLSLA CSGANVVEFLCYLDELGQ+K+H  TCPNFG RY VD 
Sbjct: 61  KRRDWNRFRQYLRSRCPTLSLACCSGANVVEFLCYLDELGQSKIHGATCPNFGQRYPVDP 120

Query: 121 YCNCPTQQPWTTLVALIGRLRVAFEENGGNPVTNPFNTVDVKVYLNDVKDSQERSRGIDR 180
           YC+CPTQQPWTTLVALIGRLRVAFEENGGNPVTNPFNTVDVKVYLNDVKDSQERSRGIDR
Sbjct: 121 YCDCPTQQPWTTLVALIGRLRVAFEENGGNPVTNPFNTVDVKVYLNDVKDSQERSRGIDR 173

[Close]

BLAST of HG10021469 vs. ExPASy TrEMBL
Match: A0A0A0LY69 (ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G553520 PE=3 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 7.8e-76
Identity = 148/180 (82.22%), Postives = 161/180 (89.44%), Query Frame = 0


Query: 1   MSAAVAAAAAAALGRRNSSSNTTTTTSSTLSPSNSFYSQYYPSLSVSVRPTPLVSRYECL 60
           MSAAVAAAAAAAL RR SSS++++TT  T S S+SFYS YYPS+SVSVRP PLVSRY+CL
Sbjct: 1   MSAAVAAAAAAALSRRTSSSSSSSTT-ITRSSSDSFYSHYYPSVSVSVRPQPLVSRYDCL 60

Query: 61  KRRDWNRFRQYLRNRCPTLSLAGCSGANVVEFLCYLDELGQTKVHATTCPNFGHRYSVDS 120
           KRRDWNRFRQYLR+R PTLSLA CSG+NVVEFL YLD LGQ+K+H  TCP+FGHRY VD 
Sbjct: 61  KRRDWNRFRQYLRSRSPTLSLACCSGSNVVEFLSYLDRLGQSKIHGATCPSFGHRYPVDP 120

Query: 121 YCNCPTQQPWTTLVALIGRLRVAFEENGGNPVTNPFNTVDVKVYLNDVKDSQERSRGIDR 180
           YC+CPTQQPWTTLVALIGRLRVAFEENGGNPVTNPFNTV VKVYLN VKDSQE SRGIDR
Sbjct: 121 YCDCPTQQPWTTLVALIGRLRVAFEENGGNPVTNPFNTVVVKVYLNKVKDSQETSRGIDR 179

[Close]

BLAST of HG10021469 vs. ExPASy TrEMBL
Match: A0A6J1KGB9 (protein G1-like6 OS=Cucurbita maxima OX=3661 GN=LOC111495526 PE=3 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 1.5e-71
Identity = 137/181 (75.69%), Postives = 156/181 (86.19%), Query Frame = 0


Query: 1   MSAAV-AAAAAAALGRRNSSSNTTTTTSSTLSPSNSFYSQYYPSLSVSVRPTPLVSRYEC 60
           MSAAV AAAAAAAL RR+SSS+++++T+S  S S SFYSQYYPS SVSVR  PL SRYEC
Sbjct: 1   MSAAVAAAAAAAALARRSSSSSSSSSTTSNRSSSGSFYSQYYPSPSVSVRQPPLASRYEC 60

Query: 61  LKRRDWNRFRQYLRNRCPTLSLAGCSGANVVEFLCYLDELGQTKVHATTCPNFGHRYSVD 120
            KR DW++FRQYLR+RCPTLSLA C+GA++VEFLCYLDE G TKVHA TCPNFGHRY VD
Sbjct: 61  RKRLDWSKFRQYLRSRCPTLSLATCTGADIVEFLCYLDEFGDTKVHADTCPNFGHRYPVD 120

Query: 121 SYCNCPTQQPWTTLVALIGRLRVAFEENGGNPVTNPFNTVDVKVYLNDVKDSQERSRGID 180
            YC+CPTQQPW ++  LI RLRVAFEENGGNPVTNPFN VDVK+YL+ +KDSQ RSRGID
Sbjct: 121 PYCDCPTQQPWNSVAGLISRLRVAFEENGGNPVTNPFNAVDVKIYLDHIKDSQNRSRGID 180

[Close]

BLAST of HG10021469 vs. ExPASy TrEMBL
Match: A0A6J1EH11 (protein G1-like6 OS=Cucurbita moschata OX=3662 GN=LOC111434020 PE=3 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 1.5e-71
Identity = 135/180 (75.00%), Postives = 154/180 (85.56%), Query Frame = 0


Query: 1   MSAAVAAAAAAALGRRNSSSNTTTTTSSTLSPSNSFYSQYYPSLSVSVRPTPLVSRYECL 60
           MSAAVAAAAAAA   R SSS+++++T+S  S S SFYSQYYPS SVSVR  PL SRYEC 
Sbjct: 1   MSAAVAAAAAAAALARRSSSSSSSSTTSNRSSSGSFYSQYYPSPSVSVRQPPLASRYECR 60

Query: 61  KRRDWNRFRQYLRNRCPTLSLAGCSGANVVEFLCYLDELGQTKVHATTCPNFGHRYSVDS 120
           KR DW++FRQYLR+RCPTLSL+ C+GA++VEFLCYLDE G TKVHA TCPNFGHRY VD 
Sbjct: 61  KRLDWSKFRQYLRSRCPTLSLSTCTGADIVEFLCYLDEFGDTKVHADTCPNFGHRYPVDP 120

Query: 121 YCNCPTQQPWTTLVALIGRLRVAFEENGGNPVTNPFNTVDVKVYLNDVKDSQERSRGIDR 180
           YC+CPTQQPW ++  LI RLRVAFEENGGNPVTNPFN VDVK+YL+D+KDSQ RSRGIDR
Sbjct: 121 YCDCPTQQPWNSVAGLISRLRVAFEENGGNPVTNPFNAVDVKIYLDDIKDSQNRSRGIDR 180

[Close]

BLAST of HG10021469 vs. TAIR 10
Match: AT3G23290.2 (Protein of unknown function (DUF640) )

HSP 1 Score: 160.2 bits (404), Expect = 1.5e-39
Identity = 91/174 (52.30%), Postives = 112/174 (64.37%), Query Frame = 0


Query: 13  LGRRNSSSNT--------TTTTSSTLSPSNSFYSQYYPSLSVSVRPTPLVSRYECLKRRD 72
           +G  N S NT        TTTT+S+ S S+S  S            T  +SRYE  KRRD
Sbjct: 8   MGTTNMSHNTNLMIAAAATTTTTSSSSSSSSGGS-----------GTNQLSRYENQKRRD 67

Query: 73  WNRFRQYLRNRCPTLSLAGCSGANVVEFLCYLDELGQTKVHATTCPNFGHRYSVDSYCNC 132
           WN F QYLRN  P LSL+ CSGA+V+EFL YLD+ G+TKVH   CP FGH  +  + C C
Sbjct: 68  WNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTHLCPFFGHP-NPPAPCAC 127

Query: 133 PTQQPWTTLVALIGRLRVAFEENGGNPVTNPFNTVDVKVYLNDVKDSQERSRGI 179
           P +Q W +L ALIGRLR AFEENGG+P TNPF    V++YL +V+DSQ ++RGI
Sbjct: 128 PLRQAWGSLDALIGRLRAAFEENGGSPETNPFGARAVRLYLREVRDSQAKARGI 169

[Close]

BLAST of HG10021469 vs. TAIR 10
Match: AT1G07090.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 159.8 bits (403), Expect = 2.0e-39
Identity = 77/137 (56.20%), Postives = 97/137 (70.80%), Query Frame = 0


Query: 42  PSLSVSVRPTPLVSRYECLKRRDWNRFRQYLRNRCPTLSLAGCSGANVVEFLCYLDELGQ 101
           PS   S   TP  SRYE  KRRDWN F QYL+N  P L+L+ CSGA+V+EFL YLD+ G+
Sbjct: 19  PSFVSSPPATP--SRYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQFGK 78

Query: 102 TKVHATTCPNFGHRYSVDSYCNCPTQQPWTTLVALIGRLRVAFEENGGNPVTNPFNTVDV 161
           TKVH   CP FGH+    S C+CP +Q W +L ALIGRLR A+EENGG P +NPF    V
Sbjct: 79  TKVHVAACPYFGHQ-QPPSPCSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARAV 138

Query: 162 KVYLNDVKDSQERSRGI 179
           ++YL +V++SQ ++RGI
Sbjct: 139 RIYLREVRESQAKARGI 152

[Close]

BLAST of HG10021469 vs. TAIR 10
Match: AT2G31160.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 154.1 bits (388), Expect = 1.1e-37
Identity = 83/162 (51.23%), Postives = 101/162 (62.35%), Query Frame = 0


Query: 17  NSSSNTTTTTSSTLSPSNSFYSQYYPSLSVSVRPTPLVSRYECLKRRDWNRFRQYLRNRC 76
           NSSS T  T      P           LS S  P+   SRYE  KRRDWN F QYLRN  
Sbjct: 26  NSSSVTGATGGEATQP-----------LSSSSSPSANSSRYENQKRRDWNTFGQYLRNHR 85

Query: 77  PTLSLAGCSGANVVEFLCYLDELGQTKVHATTCPNFGHRYSVDSYCNCPTQQPWTTLVAL 136
           P LSL+ CSGA+V+EFL YLD+ G+TKVH   C  +GH  +  + C CP +Q W +L AL
Sbjct: 86  PPLSLSRCSGAHVLEFLRYLDQFGKTKVHTNICHFYGHP-NPPAPCPCPLRQAWGSLDAL 145

Query: 137 IGRLRVAFEENGGNPVTNPFNTVDVKVYLNDVKDSQERSRGI 179
           IGRLR AFEENGG P TNPF    V++YL +V+D Q ++RG+
Sbjct: 146 IGRLRAAFEENGGKPETNPFGARAVRLYLREVRDMQSKARGV 175

[Close]

BLAST of HG10021469 vs. TAIR 10
Match: AT5G58500.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 150.2 bits (378), Expect = 1.6e-36
Identity = 73/125 (58.40%), Postives = 91/125 (72.80%), Query Frame = 0


Query: 55  SRYECLKRRDWNRFRQYLRNRCPTLSLAGCSGANVVEFLCYLDELGQTKVHATTCPNFGH 114
           SRYE  KRRDWN F QYLRN  P L+L+ CSGA+V+EFL YLD+ G+TKVHAT CP FG 
Sbjct: 18  SRYESQKRRDWNTFLQYLRNHKPPLNLSRCSGAHVLEFLKYLDQFGKTKVHATACPFFG- 77

Query: 115 RYSVDSYCNCPTQQPWTTLVALIGRLRVAFEE-NGGNPVTNPFNTVDVKVYLNDVKDSQE 174
           + +  S C CP +Q W +L ALIGRLR AFEE  GG P +NPF    V++YL +V+ +Q 
Sbjct: 78  QPNPPSQCTCPLKQAWGSLDALIGRLRAAFEEIGGGLPESNPFAAKAVRIYLKEVRQTQA 137

Query: 175 RSRGI 179
           ++RGI
Sbjct: 138 KARGI 141

[Close]

BLAST of HG10021469 vs. TAIR 10
Match: AT5G28490.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 146.7 bits (369), Expect = 1.7e-35
Identity = 73/137 (53.28%), Postives = 93/137 (67.88%), Query Frame = 0


Query: 42  PSLSVSVRPTPLVSRYECLKRRDWNRFRQYLRNRCPTLSLAGCSGANVVEFLCYLDELGQ 101
           P+ S  + P P  SRYE  KRRDWN F QYLRN  P LSL  CSGA+V+EFL YLD+ G+
Sbjct: 12  PNSSTQLTP-PSSSRYENQKRRDWNTFCQYLRNHRPPLSLPSCSGAHVLEFLRYLDQFGK 71

Query: 102 TKVHATTCPNFGHRYSVDSYCNCPTQQPWTTLVALIGRLRVAFEENGGNPVTNPFNTVDV 161
           TKVH   C  FG   +  + C CP +Q W +L ALIGRLR A+EENGG P  NPF +  V
Sbjct: 72  TKVHHQNCAFFG-LPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGPPEANPFGSRAV 131

Query: 162 KVYLNDVKDSQERSRGI 179
           +++L +V+D Q ++RG+
Sbjct: 132 RLFLREVRDFQAKARGV 146

The following BLAST results are available for this feature:

BLAST of HG10021469 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038894791.1	2.5e-84	88.89	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Benincasa hispida]	[more]
XP_008459123.1	6.3e-80	85.56	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Cucumis melo] >KAA00...	[more]
XP_004135751.1	1.6e-75	82.22	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 [Cucumis sativus] >KGN65964.1 hypothe...	[more]
KAG7019447.1	2.9e-72	76.67	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6, partial [Cucurbita argyrosperma subs...	[more]
KAG6583821.1	2.9e-72	76.67	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6, partial [Cucurbita argyrosperma subs...	[more]

BLAST of HG10021469 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LW68	2.1e-38	52.30	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
A2XVI8	2.8e-38	56.20	Protein G1-like4 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_16643 PE=3 SV=1	[more]
Q7XRS1	2.8e-38	56.20	Protein G1-like4 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L4 PE=1 SV=2	[more]
Q9LMK2	2.8e-38	56.20	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
Q7XDD0	1.8e-37	58.87	Protein G1-like5 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L5 PE=1 SV=1	[more]

BLAST of HG10021469 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E452	3.1e-80	85.56	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like OS=Cucumis melo var. makuwa OX=1...	[more]
A0A1S3C9J9	3.1e-80	85.56	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A0A0LY69	7.8e-76	82.22	ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G553520 PE=3 S...	[more]
A0A6J1KGB9	1.5e-71	75.69	protein G1-like6 OS=Cucurbita maxima OX=3661 GN=LOC111495526 PE=3 SV=1	[more]
A0A6J1EH11	1.5e-71	75.00	protein G1-like6 OS=Cucurbita moschata OX=3662 GN=LOC111434020 PE=3 SV=1	[more]

BLAST of HG10021469 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G23290.2	1.5e-39	52.30	Protein of unknown function (DUF640)	[more]
AT1G07090.1	2.0e-39	56.20	Protein of unknown function (DUF640)	[more]
AT2G31160.1	1.1e-37	51.23	Protein of unknown function (DUF640)	[more]
AT5G58500.1	1.6e-36	58.40	Protein of unknown function (DUF640)	[more]
AT5G28490.1	1.7e-35	53.28	Protein of unknown function (DUF640)	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006936	ALOG domain	PFAM	PF04852	DUF640	coord: 50..170 e-value: 1.2E-43 score: 148.3
IPR006936	ALOG domain	PROSITE	PS51697	ALOG	coord: 56..180 score: 41.238697
None	No IPR available	PANTHER	PTHR31165:SF41	PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 4	coord: 20..179
IPR040222	ALOG family	PANTHER	PTHR31165	PROTEIN G1-LIKE2	coord: 20..179

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10021469.1	HG10021469.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009299	mRNA transcription
biological_process	GO:0009416	response to light stimulus
cellular_component	GO:0005634	nucleus