HG10021395 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10021395
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Tyrosine decarboxylase
Location	Chr05: 8587702 .. 8587875 (-)
RNA-Seq Expression	HG10021395
Synteny	HG10021395

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACTTGAAATTGTTGGAGGAGATTAACAAGTCGGGAAGAGCTTACATGACACATGCGGTTATTGAAGGAATGTATGTGATTCGATTTTCCGTCGGTGGGACGATGACGGAGGAACGACATGTCGTCATGGCGTGGAAGCTTGTGCAGGAGTTGGCCGAGAAAATGATTTAA

mRNA sequence

ATGAACTTGAAATTGTTGGAGGAGATTAACAAGTCGGGAAGAGCTTACATGACACATGCGGTTATTGAAGGAATGTATGTGATTCGATTTTCCGTCGGTGGGACGATGACGGAGGAACGACATGTCGTCATGGCGTGGAAGCTTGTGCAGGAGTTGGCCGAGAAAATGATTTAA

Coding sequence (CDS)

ATGAACTTGAAATTGTTGGAGGAGATTAACAAGTCGGGAAGAGCTTACATGACACATGCGGTTATTGAAGGAATGTATGTGATTCGATTTTCCGTCGGTGGGACGATGACGGAGGAACGACATGTCGTCATGGCGTGGAAGCTTGTGCAGGAGTTGGCCGAGAAAATGATTTAA

Protein sequence

MNLKLLEEINKSGRAYMTHAVIEGMYVIRFSVGGTMTEERHVVMAWKLVQELAEKMI

Homology

[Close]

BLAST of HG10021395 vs. NCBI nr
Match: XP_004135536.1 (tyrosine/DOPA decarboxylase 1 [Cucumis sativus] >KGN65883.1 hypothetical protein Csa_023348 [Cucumis sativus])

HSP 1 Score: 101.3 bits (251), Expect = 2.9e-18
Identity = 47/57 (82.46%), Postives = 55/57 (96.49%), Query Frame = 0


Query: 1   MNLKLLEEINKSGRAYMTHAVIEGMYVIRFSVGGTMTEERHVVMAWKLVQELAEKMI 58
           +NLKLLE INK+GR YMTHAV+EGMY+IRF+VGGTMTEERHVVMAWKLVQE+AEK++
Sbjct: 440 INLKLLEGINKTGRVYMTHAVVEGMYLIRFAVGGTMTEERHVVMAWKLVQEVAEKVL 496

[Close]

BLAST of HG10021395 vs. NCBI nr
Match: KAG6583868.1 (Tyrosine/DOPA decarboxylase 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 98.6 bits (244), Expect = 1.8e-17
Identity = 47/56 (83.93%), Postives = 52/56 (92.86%), Query Frame = 0


Query: 1   MNLKLLEEINKSGRAYMTHAVIEGMYVIRFSVGGTMTEERHVVMAWKLVQELAEKM 57
           MNLKLLE INKSGRAYMTHA++ GMY+IRFSVGGTMTEERHVV AWKLVQELA ++
Sbjct: 442 MNLKLLERINKSGRAYMTHAMVAGMYLIRFSVGGTMTEERHVVTAWKLVQELANEI 497

[Close]

BLAST of HG10021395 vs. NCBI nr
Match: KAG7019491.1 (Tyrosine/DOPA decarboxylase 2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 98.6 bits (244), Expect = 1.8e-17
Identity = 47/56 (83.93%), Postives = 52/56 (92.86%), Query Frame = 0


Query: 1   MNLKLLEEINKSGRAYMTHAVIEGMYVIRFSVGGTMTEERHVVMAWKLVQELAEKM 57
           MNLKLLE INKSGRAYMTHA++ GMY+IRFSVGGTMTEERHVV AWKLVQELA ++
Sbjct: 441 MNLKLLERINKSGRAYMTHAMVAGMYLIRFSVGGTMTEERHVVTAWKLVQELANEI 496

[Close]

BLAST of HG10021395 vs. NCBI nr
Match: XP_022927630.1 (tyrosine/DOPA decarboxylase 1-like [Cucurbita moschata])

HSP 1 Score: 98.2 bits (243), Expect = 2.4e-17
Identity = 46/56 (82.14%), Postives = 52/56 (92.86%), Query Frame = 0


Query: 1   MNLKLLEEINKSGRAYMTHAVIEGMYVIRFSVGGTMTEERHVVMAWKLVQELAEKM 57
           MNLKLLE INKSGRAYMTHA++ GMY+IRFSVGGTMTEERH+V AWKLVQELA ++
Sbjct: 439 MNLKLLERINKSGRAYMTHAMVAGMYLIRFSVGGTMTEERHIVTAWKLVQELANEI 494

[Close]

BLAST of HG10021395 vs. NCBI nr
Match: XP_038894117.1 (tyrosine decarboxylase-like [Benincasa hispida])

HSP 1 Score: 98.2 bits (243), Expect = 2.4e-17
Identity = 45/57 (78.95%), Postives = 53/57 (92.98%), Query Frame = 0


Query: 1   MNLKLLEEINKSGRAYMTHAVIEGMYVIRFSVGGTMTEERHVVMAWKLVQELAEKMI 58
           MNLKLLE INKSGR YMTHA++E MYVIRF+VGG+MTEERHV+MAWKLVQEL +K++
Sbjct: 440 MNLKLLEGINKSGRVYMTHAIVEDMYVIRFAVGGSMTEERHVIMAWKLVQELVKKVL 496

[Close]

BLAST of HG10021395 vs. ExPASy Swiss-Prot
Match: O82415 (Tyrosine decarboxylase OS=Papaver somniferum OX=3469 GN=TYDC PE=1 SV=2)

HSP 1 Score: 77.8 bits (190), Expect = 4.4e-14
Identity = 34/57 (59.65%), Postives = 47/57 (82.46%), Query Frame = 0


Query: 1   MNLKLLEEINKSGRAYMTHAVIEGMYVIRFSVGGTMTEERHVVMAWKLVQELAEKMI 58
           +N+KLLE +N SG+ YMTHAV+ G+Y+IRF+VG T+TEERHV  AWK+VQE  + ++
Sbjct: 454 VNVKLLESVNASGKIYMTHAVVGGVYMIRFAVGATLTEERHVTGAWKVVQEHTDAIL 510

[Close]

BLAST of HG10021395 vs. ExPASy Swiss-Prot
Match: P54771 (Tyrosine/DOPA decarboxylase 5 OS=Papaver somniferum OX=3469 GN=TYDC5 PE=2 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 5.8e-14
Identity = 34/57 (59.65%), Postives = 46/57 (80.70%), Query Frame = 0


Query: 1   MNLKLLEEINKSGRAYMTHAVIEGMYVIRFSVGGTMTEERHVVMAWKLVQELAEKMI 58
           +N KLLE +N SG  YMTHAV+ G+Y+IRF+VG T+TEERHV MAWK++QE  + ++
Sbjct: 458 INSKLLESVNASGSIYMTHAVVGGVYMIRFAVGATLTEERHVSMAWKVIQEHTDAIL 514

[Close]

BLAST of HG10021395 vs. ExPASy Swiss-Prot
Match: P54768 (Tyrosine/DOPA decarboxylase 1 OS=Papaver somniferum OX=3469 GN=TYDC1 PE=2 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 7.6e-14
Identity = 34/57 (59.65%), Postives = 46/57 (80.70%), Query Frame = 0


Query: 1   MNLKLLEEINKSGRAYMTHAVIEGMYVIRFSVGGTMTEERHVVMAWKLVQELAEKMI 58
           +N KLLE +N SG+ YMTHAV+ G+Y+IRF+VG T+TEERHV  AWK+VQE  + ++
Sbjct: 454 VNAKLLESVNASGKIYMTHAVVGGVYMIRFAVGATLTEERHVTGAWKVVQEHTDAIL 510

[Close]

BLAST of HG10021395 vs. ExPASy Swiss-Prot
Match: Q0ZS27 (Phenylacetaldehyde synthase OS=Rosa hybrid cultivar OX=128735 GN=PAAS PE=1 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 2.2e-13
Identity = 33/57 (57.89%), Postives = 47/57 (82.46%), Query Frame = 0


Query: 1   MNLKLLEEINKSGRAYMTHAVIEGMYVIRFSVGGTMTEERHVVMAWKLVQELAEKMI 58
           +N KLLE IN SG+AYMTHAV+ G+YV+R +VG T+TEE+H+V AW +VQ+ A+ ++
Sbjct: 449 VNCKLLEAINASGKAYMTHAVVGGLYVLRCAVGATLTEEKHIVEAWNVVQDHAQAIL 505

[Close]

BLAST of HG10021395 vs. ExPASy Swiss-Prot
Match: P54769 (Tyrosine/DOPA decarboxylase 2 OS=Papaver somniferum OX=3469 GN=TYDC2 PE=1 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.9e-12
Identity = 31/57 (54.39%), Postives = 45/57 (78.95%), Query Frame = 0


Query: 1   MNLKLLEEINKSGRAYMTHAVIEGMYVIRFSVGGTMTEERHVVMAWKLVQELAEKMI 58
           +N   LE +N +G  YMTHAV+ G+Y+IRF+VG T+TEERHV+ AWK++QE A+ ++
Sbjct: 465 LNQVYLETVNATGSVYMTHAVVGGVYMIRFAVGSTLTEERHVIYAWKILQEHADLIL 521

[Close]

BLAST of HG10021395 vs. ExPASy TrEMBL
Match: A0A0A0LVR1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G537330 PE=3 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.4e-18
Identity = 47/57 (82.46%), Postives = 55/57 (96.49%), Query Frame = 0


Query: 1   MNLKLLEEINKSGRAYMTHAVIEGMYVIRFSVGGTMTEERHVVMAWKLVQELAEKMI 58
           +NLKLLE INK+GR YMTHAV+EGMY+IRF+VGGTMTEERHVVMAWKLVQE+AEK++
Sbjct: 440 INLKLLEGINKTGRVYMTHAVVEGMYLIRFAVGGTMTEERHVVMAWKLVQEVAEKVL 496

[Close]

BLAST of HG10021395 vs. ExPASy TrEMBL
Match: A0A6J1EPI2 (tyrosine/DOPA decarboxylase 1-like OS=Cucurbita moschata OX=3662 GN=LOC111434399 PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.2e-17
Identity = 46/56 (82.14%), Postives = 52/56 (92.86%), Query Frame = 0


Query: 1   MNLKLLEEINKSGRAYMTHAVIEGMYVIRFSVGGTMTEERHVVMAWKLVQELAEKM 57
           MNLKLLE INKSGRAYMTHA++ GMY+IRFSVGGTMTEERH+V AWKLVQELA ++
Sbjct: 439 MNLKLLERINKSGRAYMTHAMVAGMYLIRFSVGGTMTEERHIVTAWKLVQELANEI 494

[Close]

BLAST of HG10021395 vs. ExPASy TrEMBL
Match: A0A5A7UJZ1 (Tyrosine/DOPA decarboxylase 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold10G00540 PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 5.8e-17
Identity = 43/56 (76.79%), Postives = 53/56 (94.64%), Query Frame = 0


Query: 2   NLKLLEEINKSGRAYMTHAVIEGMYVIRFSVGGTMTEERHVVMAWKLVQELAEKMI 58
           +LKLLE INK+GR YMTHAV++GMY+IRF+ GGTMTEERHV+MAWKLVQE+AEK++
Sbjct: 202 SLKLLEGINKTGRVYMTHAVVDGMYLIRFAAGGTMTEERHVIMAWKLVQEVAEKIL 257

[Close]

BLAST of HG10021395 vs. ExPASy TrEMBL
Match: A0A1S3BAL4 (LOW QUALITY PROTEIN: tyrosine/DOPA decarboxylase 2-like OS=Cucumis melo OX=3656 GN=LOC103487999 PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 5.8e-17
Identity = 43/56 (76.79%), Postives = 53/56 (94.64%), Query Frame = 0


Query: 2   NLKLLEEINKSGRAYMTHAVIEGMYVIRFSVGGTMTEERHVVMAWKLVQELAEKMI 58
           +LKLLE INK+GR YMTHAV++GMY+IRF+ GGTMTEERHV+MAWKLVQE+AEK++
Sbjct: 441 SLKLLEGINKTGRVYMTHAVVDGMYLIRFAAGGTMTEERHVIMAWKLVQEVAEKIL 496

[Close]

BLAST of HG10021395 vs. ExPASy TrEMBL
Match: A0A6J1KL51 (tyrosine/DOPA decarboxylase 1-like OS=Cucurbita maxima OX=3661 GN=LOC111495556 PE=3 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 9.9e-17
Identity = 44/56 (78.57%), Postives = 52/56 (92.86%), Query Frame = 0


Query: 1   MNLKLLEEINKSGRAYMTHAVIEGMYVIRFSVGGTMTEERHVVMAWKLVQELAEKM 57
           MNLKLLE INKSG+A+MTHA++ GMY+IRFSVGGTMTEERHVV  WKLVQELA+++
Sbjct: 439 MNLKLLERINKSGKAFMTHAMVAGMYLIRFSVGGTMTEERHVVTTWKLVQELADEI 494

[Close]

BLAST of HG10021395 vs. TAIR 10
Match: AT4G28680.1 (L-tyrosine decarboxylase )

HSP 1 Score: 58.2 bits (139), Expect = 2.6e-09
Identity = 22/54 (40.74%), Postives = 39/54 (72.22%), Query Frame = 0


Query: 2   NLKLLEEINKSGRAYMTHAVIEGMYVIRFSVGGTMTEERHVVMAWKLVQELAEK 56
           N +LL  +N +G+ +++H  + G +V+RF+VG  +TEE+HV  AW+++Q+ A K
Sbjct: 485 NRELLAAVNSTGKIFISHTALSGKFVLRFAVGAPLTEEKHVTEAWQIIQKHASK 538

[Close]

BLAST of HG10021395 vs. TAIR 10
Match: AT4G28680.2 (L-tyrosine decarboxylase )

HSP 1 Score: 58.2 bits (139), Expect = 2.6e-09
Identity = 22/54 (40.74%), Postives = 39/54 (72.22%), Query Frame = 0


Query: 2   NLKLLEEINKSGRAYMTHAVIEGMYVIRFSVGGTMTEERHVVMAWKLVQELAEK 56
           N +LL  +N +G+ +++H  + G +V+RF+VG  +TEE+HV  AW+++Q+ A K
Sbjct: 487 NRELLAAVNSTGKIFISHTALSGKFVLRFAVGAPLTEEKHVTEAWQIIQKHASK 540

[Close]

BLAST of HG10021395 vs. TAIR 10
Match: AT4G28680.3 (L-tyrosine decarboxylase )

HSP 1 Score: 58.2 bits (139), Expect = 2.6e-09
Identity = 22/54 (40.74%), Postives = 39/54 (72.22%), Query Frame = 0


Query: 2   NLKLLEEINKSGRAYMTHAVIEGMYVIRFSVGGTMTEERHVVMAWKLVQELAEK 56
           N +LL  +N +G+ +++H  + G +V+RF+VG  +TEE+HV  AW+++Q+ A K
Sbjct: 487 NRELLAAVNSTGKIFISHTALSGKFVLRFAVGAPLTEEKHVTEAWQIIQKHASK 540

[Close]

BLAST of HG10021395 vs. TAIR 10
Match: AT4G28680.4 (L-tyrosine decarboxylase )

HSP 1 Score: 58.2 bits (139), Expect = 2.6e-09
Identity = 22/54 (40.74%), Postives = 39/54 (72.22%), Query Frame = 0


Query: 2   NLKLLEEINKSGRAYMTHAVIEGMYVIRFSVGGTMTEERHVVMAWKLVQELAEK 56
           N +LL  +N +G+ +++H  + G +V+RF+VG  +TEE+HV  AW+++Q+ A K
Sbjct: 478 NRELLAAVNSTGKIFISHTALSGKFVLRFAVGAPLTEEKHVTEAWQIIQKHASK 531

[Close]

BLAST of HG10021395 vs. TAIR 10
Match: AT2G20340.1 (Pyridoxal phosphate (PLP)-dependent transferases superfamily protein )

HSP 1 Score: 57.8 bits (138), Expect = 3.4e-09
Identity = 23/56 (41.07%), Postives = 39/56 (69.64%), Query Frame = 0


Query: 2   NLKLLEEINKSGRAYMTHAVIEGMYVIRFSVGGTMTEERHVVMAWKLVQELAEKMI 58
           N +LL+ +N SG+ +M+H  + G  V+R ++G  +TEE+HV  AWK++QE A  ++
Sbjct: 433 NRELLDAVNSSGKLFMSHTALSGKIVLRCAIGAPLTEEKHVKEAWKIIQEEASYLL 488

The following BLAST results are available for this feature:

BLAST of HG10021395 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004135536.1	2.9e-18	82.46	tyrosine/DOPA decarboxylase 1 [Cucumis sativus] >KGN65883.1 hypothetical protein...	[more]
KAG6583868.1	1.8e-17	83.93	Tyrosine/DOPA decarboxylase 2, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7019491.1	1.8e-17	83.93	Tyrosine/DOPA decarboxylase 2, partial [Cucurbita argyrosperma subsp. argyrosper...	[more]
XP_022927630.1	2.4e-17	82.14	tyrosine/DOPA decarboxylase 1-like [Cucurbita moschata]	[more]
XP_038894117.1	2.4e-17	78.95	tyrosine decarboxylase-like [Benincasa hispida]	[more]

BLAST of HG10021395 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O82415	4.4e-14	59.65	Tyrosine decarboxylase OS=Papaver somniferum OX=3469 GN=TYDC PE=1 SV=2	[more]
P54771	5.8e-14	59.65	Tyrosine/DOPA decarboxylase 5 OS=Papaver somniferum OX=3469 GN=TYDC5 PE=2 SV=1	[more]
P54768	7.6e-14	59.65	Tyrosine/DOPA decarboxylase 1 OS=Papaver somniferum OX=3469 GN=TYDC1 PE=2 SV=1	[more]
Q0ZS27	2.2e-13	57.89	Phenylacetaldehyde synthase OS=Rosa hybrid cultivar OX=128735 GN=PAAS PE=1 SV=1	[more]
P54769	1.9e-12	54.39	Tyrosine/DOPA decarboxylase 2 OS=Papaver somniferum OX=3469 GN=TYDC2 PE=1 SV=1	[more]

BLAST of HG10021395 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LVR1	1.4e-18	82.46	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G537330 PE=3 SV=1	[more]
A0A6J1EPI2	1.2e-17	82.14	tyrosine/DOPA decarboxylase 1-like OS=Cucurbita moschata OX=3662 GN=LOC111434399...	[more]
A0A5A7UJZ1	5.8e-17	76.79	Tyrosine/DOPA decarboxylase 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3BAL4	5.8e-17	76.79	LOW QUALITY PROTEIN: tyrosine/DOPA decarboxylase 2-like OS=Cucumis melo OX=3656 ...	[more]
A0A6J1KL51	9.9e-17	78.57	tyrosine/DOPA decarboxylase 1-like OS=Cucurbita maxima OX=3661 GN=LOC111495556 P...	[more]

BLAST of HG10021395 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G28680.1	2.6e-09	40.74	L-tyrosine decarboxylase	[more]
AT4G28680.2	2.6e-09	40.74	L-tyrosine decarboxylase	[more]
AT4G28680.3	2.6e-09	40.74	L-tyrosine decarboxylase	[more]
AT4G28680.4	2.6e-09	40.74	L-tyrosine decarboxylase	[more]
AT2G20340.1	3.4e-09	41.07	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015422	Pyridoxal phosphate-dependent transferase, small domain	GENE3D	3.90.1150.10	Aspartate Aminotransferase, domain 1	coord: 1..57 e-value: 6.4E-19 score: 69.7
None	No IPR available	PANTHER	PTHR11999	GROUP II PYRIDOXAL-5-PHOSPHATE DECARBOXYLASE	coord: 1..56
None	No IPR available	PANTHER	PTHR11999:SF96	TYROSINE DECARBOXYLASE	coord: 1..56
IPR015424	Pyridoxal phosphate-dependent transferase	SUPERFAMILY	53383	PLP-dependent transferases	coord: 2..55

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10021395.1	HG10021395.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006520	cellular amino acid metabolic process
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0016831	carboxy-lyase activity
molecular_function	GO:0030170	pyridoxal phosphate binding
molecular_function	GO:0003824	catalytic activity