HG10021345 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10021345
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Unknown protein
Location	Chr05: 7935537 .. 7935896 (+)
RNA-Seq Expression	HG10021345
Synteny	HG10021345

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTACGTACCTTGGTCATGTTGCCATGAAGTTTATTTCAAGATGCTCAGAGATTAAGTATCTTAAAGCATTCTCCATTCACGAGGGTCTTGTAGAATCTGATTGTTTGGAGGTGGTTAATCTTCTGAATAACATGACCGCCGACCTTTTTGAGGTGTCATATTTGATTAAGGACACTATGCTTAGTGCTCGTGATTTTGCGGATATCTCATTCACTCACACCTTTTGGTGGCACAACTTTTTAGCACATTCTCTTGCGAAAAAGGCTTTGGATGAGCGGATGTCTTCTCTTCTCTATACTCCTTACTCTTGTCCTATTTGTTGTTTCCTGATGTTGATACTTAGTTTGTTGTTGTGA

mRNA sequence

ATGATTACGTACCTTGGTCATGTTGCCATGAAGTTTATTTCAAGATGCTCAGAGATTAAGTATCTTAAAGCATTCTCCATTCACGAGGGTCTTGTAGAATCTGATTGTTTGGAGGTGGTTAATCTTCTGAATAACATGACCGCCGACCTTTTTGAGGTGTCATATTTGATTAAGGACACTATGCTTAGTGCTCGTGATTTTGCGGATATCTCATTCACTCACACCTTTTGGTGGCACAACTTTTTAGCACATTCTCTTGCGAAAAAGGCTTTGGATGAGCGGATGTCTTCTCTTCTCTATACTCCTTACTCTTGTCCTATTTGTTGTTTCCTGATGTTGATACTTAGTTTGTTGTTGTGA

Coding sequence (CDS)

ATGATTACGTACCTTGGTCATGTTGCCATGAAGTTTATTTCAAGATGCTCAGAGATTAAGTATCTTAAAGCATTCTCCATTCACGAGGGTCTTGTAGAATCTGATTGTTTGGAGGTGGTTAATCTTCTGAATAACATGACCGCCGACCTTTTTGAGGTGTCATATTTGATTAAGGACACTATGCTTAGTGCTCGTGATTTTGCGGATATCTCATTCACTCACACCTTTTGGTGGCACAACTTTTTAGCACATTCTCTTGCGAAAAAGGCTTTGGATGAGCGGATGTCTTCTCTTCTCTATACTCCTTACTCTTGTCCTATTTGTTGTTTCCTGATGTTGATACTTAGTTTGTTGTTGTGA

Protein sequence

MITYLGHVAMKFISRCSEIKYLKAFSIHEGLVESDCLEVVNLLNNMTADLFEVSYLIKDTMLSARDFADISFTHTFWWHNFLAHSLAKKALDERMSSLLYTPYSCPICCFLMLILSLLL

Homology

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BLAST of HG10021345 vs. NCBI nr
Match: XP_015388559.1 (uncharacterized protein LOC107178191 [Citrus sinensis])

HSP 1 Score: 58.9 bits (141), Expect = 3.4e-05
Identity = 32/80 (40.00%), Postives = 45/80 (56.25%), Query Frame = 0


Query: 19  IKYLKAFSIHEGLVESDCLEVVNLLNNMTADLFEVSYLIKDTMLSARDFADISFTHTFWW 78
           +K  K FS+   ++E+DC EVV+LLNN       +S++I D     RDF ++ F H    
Sbjct: 167 LKVAKEFSLSAMIMETDCKEVVDLLNNTKGSRTGISWVISDIQEQQRDFKEVKFRHIPRT 226

Query: 79  HNFLAHSLAKKALDERMSSL 99
            N  AHSLAK AL    S++
Sbjct: 227 CNTCAHSLAKLALGANTSAI 246

The following BLAST results are available for this feature:

BLAST of HG10021345 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_015388559.1	3.4e-05	40.00	uncharacterized protein LOC107178191 [Citrus sinensis]	[more]

BLAST of HG10021345 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10021345 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10021345 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 29..90 e-value: 1.6E-6 score: 27.9

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10021345.1	HG10021345.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity