HG10021085 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10021085
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionRNA pseudouridine synthase 6, chloroplastic-like
LocationChr05: 5177158 .. 5181893 (+)
RNA-Seq ExpressionHG10021085
SyntenyHG10021085
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTGGCTTCCGTGAATATAGCTCTGGTGGCCTCCCATGGTTGCCGTGGCCTCACTACATCACTTTCCCTGCTGCGCACATTGGCAAGAGCTCGTGCTAGACTCAGTGCTGCCAGTTGCAGCAATTACTTTCCTCCTCGGCGTTCTTTGAGTTCGAAGAGCAGCGCGTTCCCTTGTGAATCCTCAATAACAGACGTTACAATCACAAAAACTGCAACTACAGAAAATGGGTACCGCTAATTTTTTTTCTTATACCTTCTTGTTTATTAGTCTGATTGGTAGTTTTTTTATTTATTTATTTTTTTTTTATTTTTTATTTTTTATAAGACGTTTGATTGCTAGTTTGAACAGTTACACTGTTGTTTAGGTGTGCTTTAATCGTATAAATGTGACTTAACGACTTACATGTTTAGATTGTTTGAATGTTTATTTGATGCTTGTGGGAAATTTCATCGTTGGTCATTCCAACATTTCTGGTTTATGTAACTCGTTGAATTGAGTTAGGATCTTGTTTTTCTACGTATTGCTTGTCTTGTGGTAATAGTTACAGAATAAAAGCAAAGTGGAAGGTTAAGGAAAAAAAAGAGAAAGGAGAAAAAAGAAAATTCGTGGCTGATGGCTCGAACTATATGCATTATATTTGGACTACAGGCTTACAAGCACTGAAAATTGGGATTTTCATACGGATGATCTATTTTGAGAGGCGCAAATGAAATCTTGTCCAACTTTTGAAAATTGAAGTTTTTTTTGATCTTTAGATTACGTCATCGTTGAGTGAAATTGCCAAAACAACCAACAAATATGCATTTAGGCTTCTCAATTCTCGACCTCGTTCCTTGCTCTCGATCCACTTTTTATCTTCTTCGTTCTCTTATCTTTTCTTCATCTTCCTTAATGAACCAAACCTCTAAACCTTGAAGGGCCACTGTTTGGGTGCTGAAGATTCGACCGTCGCCGTGAAGCACCGGAGTCTATTGCAGTCGTGGGTTGCCATCAATCGGAAGTGCGTGTGTACCGTTTGTGGGGCTTTGTCGATGGTTTGCGCAAAAATGTTGGACAAGAAGATGAAGATCTGAGGAAGGGAAAGAAGCGGGAGCGAGAAGGAAGAGAAGGAAGAGAAGGAATTGTTTTATGGTCGTTTCAGTAATTTCATCCAACGACTACACAAGTGAAAGGTAACTATCATGGGCTGGCCTAGTGGTAAATATGGGGGTATGCCTTGATAAAGACCTAAGAGGTCATGAGTTCAATCAATGGTGGCCACCTACCTAGGATTTAATATCCTATGAGTTTCCTTGGTTCCCAAATGTTATAGGGTCAGGCGGGTTGTCCCGATAAAAAAAAAAGTTACACAAGTGAAAGGTCAAGAAACGTAGATTTTCAAAATCGGGTTAGATTTCATTTGGGCCTCTTAAAGTAAGCCATATATACAAAAATTCCCTAAAACTTTGTGGTCGAAACTGACTTACTTGTTAGTAGATCCAAACTTCAATTTGCCTTAGATAAGGGAGAAAATGATTTCTTGGAACTATCAAATCACCAATCAACCCAAGGCTTAAGTTGATGGGTTATGATAAATAATAAATATTAGTTGAGGAGAAAATGACATTACAGGTTCGAACACATGACCGACCTCCTACATTGATAGTATGTTAAATCACCAATCAACTAAGAAGTTTAAGTTGATGGGTTACGGTACCTTTGCTGATTACACTGTGAGATGCTTAATACACTTGCAGTAATCATGATTTGTTATTGGATTTTTTCATTCTCCCAACCCCTGGTATTGAATTTCATTTTATAATTCTTTTAGGATTTAGCATGCTCAGTCTGAAATTAATTTCAGGTATCCTCAATATCATCGTTTGCTTCCATGTCCCTCATTCAATGAACCACCACGAGTTGAACATATGGTCGTTCTGGAAGAGGGACCTGTTATGGAATACATCTGTAAATCATTGGACCTTCCTCCTCTGTAAGTTCTACTTCTAGCTTTTAGTTGTTCATAATAATTTAGTCTGCAACATAAGGTTAAGTCTAATTTCGATGAAGTAATGATTTCATAATTTCATTGTTTGAAGGTATGTTGCAGACCTTATTCATTTTGGTGCAGTATATTATGCCCTAGTATGCCCACGGCCTCCTCAAACTGCAACCCCCGAGCAAATTAGACTGTTCAAAAAATTTACAGAACCATCATTTTTGAAAGGGCGAAAATCTATCAAAGGAAAAACTGTGAGAGAAGCACAGAAGACTTTCCGGATAACTCACGTTGATGAGTTTGTGGAAATTGGAACGTACTTGCGTGTTCACGTGCATCCCAAACGCTTTCCAAGGTGAAATAAACTACCTGTTTTTCTTTTTAAAAACAAAATGATGTTCATAATGGAATGATGCTCGTTGAAATTTACAATCAATCAGGTGCTATGAAATTGATTGGAAATCAAGAATTATCGCTGTGACAGAATCCTATGTGGTTTTGGACAAACCTGCTGGTACATCGGTCTGTGGTTGAACACTTGAACCATTAATCTCTGGCTTGAGGAATTATTTTCTTTGCCTTCTATTTCTGGTGACTGTTGGTTGTTGCACACTTTCTTCCTGTAACATTCTGAAAATTTGATCAAGATTCAAGACGTAGGCACTAGGCATCTTGGTGATATGGATAAATTTACCTATCTTTCAATAACATGCCACCTCTGAGGCTCTAAGTAATAAAATTTGATGATGTGAACAATAAACCCTAATAGAGAATGACACAATTTATTTGCATCATTTTTTTTTTTTGTTTTGATAAAACAATTTGTTTACATCAATAGCATGTAGCGGAACATTCATTTCTCAGTCATTAAGTAAGACAAATATTCTGTTAGGTAGGAGGCACTACTGACAACATTGAAGAAAGTTGTGCAACCTTTGCAACTCGTGCTTTAGGATTAACATCTCCCTTGTGGACTACCCATCAGATTGACAACTGCACTGAAGGGTGGTAATGATGTTTCTTATAGATCTTTCTATGTCCAATTCCTTTCTTCAAAATACTTGTTCTCATTCATTTACACTTTGCAGCGTCATTCTAGCTAGGACGAAAGAATATTGCTCCATCTTCCATCGTAAAATCAGAGTAAGTTTCATGTCTTATTTCTTGAGTTTGACCATTGCGGTTAACTTACTTTACTAATTGGTAAAATTCATTCCAAGACAATGCTTAAAAGCGACAACTCTATTCTCTATTCCCGTATTGTTACATAAGTTTATTTTTTTTAACGATCTCTGTTCATTTGCTCCTTTTCCATTGTTTATGTGTGTTATAATTTGGATATGGAGTAGTTAAATATTCCTGCCCAAATCTTCGTCATGCTGACCATACTGGTAAAATATAAAAATGCTCTTACTCTATGAAGTCTTATCTCTATGATAAAGAGGTCTTGCTCCATCAAGGGAACAAGAACGGAAGCTAGTCATTAAACTTTGCATTTGAGATTGCCATGTTTAAGCACTTTGCAACATGGGAAGTGCAAGATAAAGGAAATAACAATGGATTTTATTTAGCGATAATTCATGATAAACAAGCTGCACAAACTGACGAGTTATTTTATTTTTAGTGGTGTTGGTAGAATATCCATTATACATATTTGAATTTACTAGTTAAGTTATTTGTCTTGATGTTTTTCATTTCTTAATTTGATAGTAATGCTTTACAATTCTTCTTACTAGGAGAAAAAGGTTATGAAGCTTTATCTTGCGCTTGCTGCTGCTCCCGTGCCAATGGGAATAATAACACACTACATGCGGCCAATTAATATGGCTCCCAGACTTGTTTCCAAAGGCAAGTTTCCCGATCAAGCATTCAAATAATAATAGGATATTGCTTTGAACTATTTGTTGCAATTTGATATGTTGGGGAACATATGCATACCGTTTGATTTTTATTTTGCAGCCATAGAATTAAGCGCTTAGAAAATCAGTCTTAGCTTTTCTGCCAACAAATTAATATGCAAATGGTCGTCCCAATCATATTAACATTTTAACTTCCACCCAACCCGGCACCTACAACAGTGTCACCCTCAACCTCCAACCCTGGCCACGAATGTATCCATAATAAGGTGTGATTGACAAAAGTCCTTTTGGTCACTTTAAACTTCTTCTGCTTGCAGATTGTATTGATGGATGGAACCTGTGTCAGCTTGAGGTGTTGGAATGTAGAGAGGTTTCATGGCCGGATGCTGATATTGAAGCAAAATACTGTATTGAAGATTGTGGATGGCCCTCCAAAGAGAAAGCATATGAATGTAAAATCAACCTCTTGACTGGTCGAACACATCAGGTTCTTAGTGTAGTCATTCTCTTTTGGTAGTTACCTTTATTATTTTGTTCATAAATTCTTGCAGCCAGAGTTGGGACATTGAAATTAGTTCTTAAAATGAATACGCTGTTTCCTGATGATGCAGATTCGAGCACAGCTGGCTGATTGTGGAGCACCATTGGTTGGTGATTCCATGTATATGCCTGCTGCGGTTGCGGAGATGGCTAGTCCTGGGTTGAATCCATTTGGAAAATGTAAGAAAGAGTATGCAAGCGAAGAAGATAAAGGAATTGCAGCAACAGAGTGGATTGCTCTGCACGGAAAGGAACCAGCCGTCGCTATTGGACTGCAGGCTTATGAGATTTCATGGGACTCAGGGGAACACATTTACAATGCTAGGACTCCTTGGTGGAAGCAGGAGCAATTATAG

mRNA sequence

ATGCTGGCTTCCGTGAATATAGCTCTGGTGGCCTCCCATGGTTGCCGTGGCCTCACTACATCACTTTCCCTGCTGCGCACATTGGCAAGAGCTCGTGCTAGACTCAGTGCTGCCAGTTGCAGCAATTACTTTCCTCCTCGGCGTTCTTTGAGTTCGAAGAGCAGCGCGTTCCCTTGTGAATCCTCAATAACAGACGTTACAATCACAAAAACTGCAACTACAGAAAATGGATTCGACCGTCGCCGTGAAGCACCGGAGTCTATTGCAGTCGTGGGTTGCCATCAATCGGAAGTGCGTGTGTACCGTTTGTGGGGCTTTGTCGATGGTTTGCGCAAAAATGTTGGACAAGAAGATGAAGATCTGAGGAAGGGAAAGAAGCGGGAGCGAGAAGGAAGAGAAGGAAGAGAAGGAATTGTTTTATGGTCGTTTCAGTATCCTCAATATCATCGTTTGCTTCCATGTCCCTCATTCAATGAACCACCACGAGTTGAACATATGGTCGTTCTGGAAGAGGGACCTGTTATGGAATACATCTGTAAATCATTGGACCTTCCTCCTCTGTATGTTGCAGACCTTATTCATTTTGGTGCAGTATATTATGCCCTAGTATGCCCACGGCCTCCTCAAACTGCAACCCCCGAGCAAATTAGACTGTTCAAAAAATTTACAGAACCATCATTTTTGAAAGGGCGAAAATCTATCAAAGGAAAAACTGTGAGAGAAGCACAGAAGACTTTCCGGATAACTCACGTTGATGAGTTTGTGGAAATTGGAACGTACTTGCGTGTTCACGTGCATCCCAAACGCTTTCCAAGGTGCTATGAAATTGATTGGAAATCAAGAATTATCGCTGTGACAGAATCCTATGTGGTTTTGGACAAACCTGCTGGTACATCGGTAGGAGGCACTACTGACAACATTGAAGAAAGTTGTGCAACCTTTGCAACTCGTGCTTTAGGATTAACATCTCCCTTGTGGACTACCCATCAGATTGACAACTGCACTGAAGGGTGCGTCATTCTAGCTAGGACGAAAGAATATTGCTCCATCTTCCATCGTAAAATCAGACTTGAGGTGTTGGAATGTAGAGAGGTTTCATGGCCGGATGCTGATATTGAAGCAAAATACTGTATTGAAGATTGTGGATGGCCCTCCAAAGAGAAAGCATATGAATGTAAAATCAACCTCTTGACTGGTCGAACACATCAGATTCGAGCACAGCTGGCTGATTGTGGAGCACCATTGGTTGGTGATTCCATGTATATGCCTGCTGCGGTTGCGGAGATGGCTAGTCCTGGGTTGAATCCATTTGGAAAATGTAAGAAAGAGTATGCAAGCGAAGAAGATAAAGGAATTGCAGCAACAGAGTGGATTGCTCTGCACGGAAAGGAACCAGCCGTCGCTATTGGACTGCAGGCTTATGAGATTTCATGGGACTCAGGGGAACACATTTACAATGCTAGGACTCCTTGGTGGAAGCAGGAGCAATTATAG

Coding sequence (CDS)

ATGCTGGCTTCCGTGAATATAGCTCTGGTGGCCTCCCATGGTTGCCGTGGCCTCACTACATCACTTTCCCTGCTGCGCACATTGGCAAGAGCTCGTGCTAGACTCAGTGCTGCCAGTTGCAGCAATTACTTTCCTCCTCGGCGTTCTTTGAGTTCGAAGAGCAGCGCGTTCCCTTGTGAATCCTCAATAACAGACGTTACAATCACAAAAACTGCAACTACAGAAAATGGATTCGACCGTCGCCGTGAAGCACCGGAGTCTATTGCAGTCGTGGGTTGCCATCAATCGGAAGTGCGTGTGTACCGTTTGTGGGGCTTTGTCGATGGTTTGCGCAAAAATGTTGGACAAGAAGATGAAGATCTGAGGAAGGGAAAGAAGCGGGAGCGAGAAGGAAGAGAAGGAAGAGAAGGAATTGTTTTATGGTCGTTTCAGTATCCTCAATATCATCGTTTGCTTCCATGTCCCTCATTCAATGAACCACCACGAGTTGAACATATGGTCGTTCTGGAAGAGGGACCTGTTATGGAATACATCTGTAAATCATTGGACCTTCCTCCTCTGTATGTTGCAGACCTTATTCATTTTGGTGCAGTATATTATGCCCTAGTATGCCCACGGCCTCCTCAAACTGCAACCCCCGAGCAAATTAGACTGTTCAAAAAATTTACAGAACCATCATTTTTGAAAGGGCGAAAATCTATCAAAGGAAAAACTGTGAGAGAAGCACAGAAGACTTTCCGGATAACTCACGTTGATGAGTTTGTGGAAATTGGAACGTACTTGCGTGTTCACGTGCATCCCAAACGCTTTCCAAGGTGCTATGAAATTGATTGGAAATCAAGAATTATCGCTGTGACAGAATCCTATGTGGTTTTGGACAAACCTGCTGGTACATCGGTAGGAGGCACTACTGACAACATTGAAGAAAGTTGTGCAACCTTTGCAACTCGTGCTTTAGGATTAACATCTCCCTTGTGGACTACCCATCAGATTGACAACTGCACTGAAGGGTGCGTCATTCTAGCTAGGACGAAAGAATATTGCTCCATCTTCCATCGTAAAATCAGACTTGAGGTGTTGGAATGTAGAGAGGTTTCATGGCCGGATGCTGATATTGAAGCAAAATACTGTATTGAAGATTGTGGATGGCCCTCCAAAGAGAAAGCATATGAATGTAAAATCAACCTCTTGACTGGTCGAACACATCAGATTCGAGCACAGCTGGCTGATTGTGGAGCACCATTGGTTGGTGATTCCATGTATATGCCTGCTGCGGTTGCGGAGATGGCTAGTCCTGGGTTGAATCCATTTGGAAAATGTAAGAAAGAGTATGCAAGCGAAGAAGATAAAGGAATTGCAGCAACAGAGTGGATTGCTCTGCACGGAAAGGAACCAGCCGTCGCTATTGGACTGCAGGCTTATGAGATTTCATGGGACTCAGGGGAACACATTTACAATGCTAGGACTCCTTGGTGGAAGCAGGAGCAATTATAG

Protein sequence

MLASVNIALVASHGCRGLTTSLSLLRTLARARARLSAASCSNYFPPRRSLSSKSSAFPCESSITDVTITKTATTENGFDRRREAPESIAVVGCHQSEVRVYRLWGFVDGLRKNVGQEDEDLRKGKKREREGREGREGIVLWSFQYPQYHRLLPCPSFNEPPRVEHMVVLEEGPVMEYICKSLDLPPLYVADLIHFGAVYYALVCPRPPQTATPEQIRLFKKFTEPSFLKGRKSIKGKTVREAQKTFRITHVDEFVEIGTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTTDNIEESCATFATRALGLTSPLWTTHQIDNCTEGCVILARTKEYCSIFHRKIRLEVLECREVSWPDADIEAKYCIEDCGWPSKEKAYECKINLLTGRTHQIRAQLADCGAPLVGDSMYMPAAVAEMASPGLNPFGKCKKEYASEEDKGIAATEWIALHGKEPAVAIGLQAYEISWDSGEHIYNARTPWWKQEQL
Homology
[Close]
BLAST of HG10021085 vs. NCBI nr
Match: XP_038894645.1 (RNA pseudouridine synthase 6, chloroplastic isoform X1 [Benincasa hispida])

HSP 1 Score: 781.2 bits (2016), Expect = 5.4e-222
Identity = 405/546 (74.18%), Postives = 415/546 (76.01%), Query Frame = 0 

Query: 1   MLASVNIALVASHGCRGLTTSLSLLRTLARARARLSAASCSNYFPPRRSLSSKSSAFPCE 60
           MLAS+NIALV+SHGCRGLTTSLSLLRTLA  RA  +AASC NYF PRRSLSSKSSAFP E
Sbjct: 1   MLASMNIALVSSHGCRGLTTSLSLLRTLAATRASPNAASCGNYFAPRRSLSSKSSAFPRE 60

Query: 61  SSITDVTITKTAT--TENGFDRRREAPESIAVVGCHQSEVRVYRLWGFVDGLRKNVGQED 120
           SSITDVT+TKTAT   ENG                                         
Sbjct: 61  SSITDVTVTKTATNSAENG----------------------------------------- 120

Query: 121 EDLRKGKKREREGREGREGIVLWSFQYPQYHRLLPCPSFNEPPRVEHMVVLEEGPVMEYI 180
                                     YPQYHRLLPCP FNEPPRVEHMVVLE GPVMEYI
Sbjct: 121 --------------------------YPQYHRLLPCPLFNEPPRVEHMVVLEGGPVMEYI 180

Query: 181 CKSLDLPPLYVADLIHFGAVYYALVCPRPPQTATPEQIRLFKKFTEPSFLKGRKSIKGKT 240
           CKSLDLPPLYVADLIHFGAVYYALVCP+PPQTATPEQIRLFKKFTEPSFLKGR+SIKGKT
Sbjct: 181 CKSLDLPPLYVADLIHFGAVYYALVCPQPPQTATPEQIRLFKKFTEPSFLKGRRSIKGKT 240

Query: 241 VREAQKTFRITHVDEFVEIGTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGT 300
           VREAQKTFRITH+DEFVE+GTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGT
Sbjct: 241 VREAQKTFRITHIDEFVEVGTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGT 300

Query: 301 SVGGTTDNIEESCATFATRALGLTSPLWTTHQIDNCTEGCVILARTKEYCSIFHRKIR-- 360
           SVGGTTDNIEESCATFATRALGLTSPLWTTHQIDNCTEGCVILARTKEYCSIFHRKIR  
Sbjct: 301 SVGGTTDNIEESCATFATRALGLTSPLWTTHQIDNCTEGCVILARTKEYCSIFHRKIREK 360

Query: 361 ---------------------------------------------LEVLECREVSWPDAD 420
                                                        LEVLECREVSWPDAD
Sbjct: 361 KVMKLYLALAAAPVPMGIITHYMRPINMAPRLVSKDCIDGWNLCQLEVLECREVSWPDAD 420

Query: 421 IEAKYCIEDCGWPSKEKAYECKINLLTGRTHQIRAQLADCGAPLVGDSMYMPAAVAEMAS 480
           IEAKYCIEDCGWP K+KAYECKINLLTGRTHQIRAQLADCGAPLVGDSMYMPAAVAEMAS
Sbjct: 421 IEAKYCIEDCGWPLKKKAYECKINLLTGRTHQIRAQLADCGAPLVGDSMYMPAAVAEMAS 479

Query: 481 PGLNPFGKCKKEYASEEDKGIAATEWIALHGKEPAVAIGLQAYEISWDSGEHIYNARTPW 498
           PGLNPFGKCKKEY SEEDKGIA  EWIALHGKEPAVAIGLQAYEISWDSG+HIYNA TPW
Sbjct: 481 PGLNPFGKCKKEYMSEEDKGIAVAEWIALHGKEPAVAIGLQAYEISWDSGKHIYNAGTPW 479

[Close]
BLAST of HG10021085 vs. NCBI nr
Match: XP_008441255.1 (PREDICTED: RNA pseudouridine synthase 6, chloroplastic-like isoform X1 [Cucumis melo] >KAA0056872.1 RNA pseudouridine synthase 6 [Cucumis melo var. makuwa] >TYJ99375.1 RNA pseudouridine synthase 6 [Cucumis melo var. makuwa])

HSP 1 Score: 753.1 bits (1943), Expect = 1.6e-213
Identity = 394/547 (72.03%), Postives = 408/547 (74.59%), Query Frame = 0 

Query: 1   MLASVNIALVASHGCRGL-TTSLSLLRTLARARARLSAASCSNYFPPRRSLSSKSSAFPC 60
           MLAS+NIALVA+HGCRGL +TSLSLLRTLAR RA  SAASC +YF PRRS SS SSAFPC
Sbjct: 1   MLASMNIALVATHGCRGLGSTSLSLLRTLARTRASPSAASCCDYFAPRRSFSSISSAFPC 60

Query: 61  ESSITDVTITKTAT--TENGFDRRREAPESIAVVGCHQSEVRVYRLWGFVDGLRKNVGQE 120
           +SSITDVT+TKTAT   ENG                                        
Sbjct: 61  KSSITDVTVTKTATDSAENG---------------------------------------- 120

Query: 121 DEDLRKGKKREREGREGREGIVLWSFQYPQYHRLLPCPSFNEPPRVEHMVVLEEGPVMEY 180
                                      YPQYHRLLPCPSF++ PRVEHMVVLE GPVMEY
Sbjct: 121 ---------------------------YPQYHRLLPCPSFSKLPRVEHMVVLEAGPVMEY 180

Query: 181 ICKSLDLPPLYVADLIHFGAVYYALVCPRPPQTATPEQIRLFKKFTEPSFLKGRKSIKGK 240
           ICKSLDLPPLYVADLIHFGAVYYALVCP+PP+TATPEQIRLFKKFTEPSFLKGRKSIKGK
Sbjct: 181 ICKSLDLPPLYVADLIHFGAVYYALVCPQPPKTATPEQIRLFKKFTEPSFLKGRKSIKGK 240

Query: 241 TVREAQKTFRITHVDEFVEIGTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAG 300
           TVREAQKTFRITHVDEFVE+GTYLRVHVHPKRFPRCY+IDWKSRIIAVTESYVVLDKPAG
Sbjct: 241 TVREAQKTFRITHVDEFVEVGTYLRVHVHPKRFPRCYDIDWKSRIIAVTESYVVLDKPAG 300

Query: 301 TSVGGTTDNIEESCATFATRALGLTSPLWTTHQIDNCTEGCVILARTKEYCSIFHRKIR- 360
           TSVGGTTDNIEESCATFATRALGLTSPLWTTHQIDNCTEGCVILARTKEYCSIFHRKIR 
Sbjct: 301 TSVGGTTDNIEESCATFATRALGLTSPLWTTHQIDNCTEGCVILARTKEYCSIFHRKIRE 360

Query: 361 ----------------------------------------------LEVLECREVSWPDA 420
                                                         LEVLECREVSWPD 
Sbjct: 361 KRVMKHYLALSAAPVPMGIITHYMRPINIAPRLVSKDCIDGWILCQLEVLECREVSWPDV 420

Query: 421 DIEAKYCIEDCGWPSKEKAYECKINLLTGRTHQIRAQLADCGAPLVGDSMYMPAAVAEMA 480
           DIEAKYC ED GWPSK+KAYECKINLLTGRTHQIRAQLADCGAPLVGDSMYMPA VAEM 
Sbjct: 421 DIEAKYCFEDGGWPSKKKAYECKINLLTGRTHQIRAQLADCGAPLVGDSMYMPAVVAEMG 480

Query: 481 SPGLNPFGKCKKEYASEEDKGIAATEWIALHGKEPAVAIGLQAYEISWDSGEHIYNARTP 498
           SPGLNPFGKCKKEY SEEDK  A  EWIALHGKEPAVAIGLQAYEISWDS EHIYNA TP
Sbjct: 481 SPGLNPFGKCKKEYTSEEDKETAVAEWIALHGKEPAVAIGLQAYEISWDSREHIYNAGTP 480

[Close]
BLAST of HG10021085 vs. NCBI nr
Match: KAG7012376.1 (RNA pseudouridine synthase 6, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 752.7 bits (1942), Expect = 2.1e-213
Identity = 385/533 (72.23%), Postives = 409/533 (76.74%), Query Frame = 0 

Query: 1   MLASVNIALVASHGCRGLTTSLSLLRTLARARARLSAASCSNYFPPRRSLSSKSSAFPCE 60
           MLAS+NIALVA++GCRGL TSL+L RTLAR RA  SA+ C NYF  RRSLSSKSSAFPCE
Sbjct: 38  MLASMNIALVAANGCRGLGTSLALQRTLARTRANFSASVCGNYFAARRSLSSKSSAFPCE 97

Query: 61  SSITDVTITKTATT--ENGFDRRREAPESIAVVGCHQSEVRVYRLWGFVDGLRKNVGQED 120
           SS+TDV +TK+ATT  ENG                                         
Sbjct: 98  SSVTDVAVTKSATTFAENG----------------------------------------- 157

Query: 121 EDLRKGKKREREGREGREGIVLWSFQYPQYHRLLPCPSFNEPPRVEHMVVLEEGPVMEYI 180
                                     YPQYHRLLPCPSF+ PPRVEH+VVLE GPVMEYI
Sbjct: 158 --------------------------YPQYHRLLPCPSFSGPPRVEHLVVLEGGPVMEYI 217

Query: 181 CKSLDLPPLYVADLIHFGAVYYALVCPRPPQTATPEQIRLFKKFTEPSFLKGRKSIKGKT 240
            KSLDLPPLYVADLIHFGAVYYALVCP+PP TATPEQIRLFKKFT+PSFLKGRKSIKGKT
Sbjct: 218 SKSLDLPPLYVADLIHFGAVYYALVCPQPPPTATPEQIRLFKKFTQPSFLKGRKSIKGKT 277

Query: 241 VREAQKTFRITHVDEFVEIGTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGT 300
           VREAQKTFRIT +DEFVE+GTYLR+HVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGT
Sbjct: 278 VREAQKTFRITRIDEFVEVGTYLRIHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGT 337

Query: 301 SVGGTTDNIEESCATFATRALGLTSPLWTTHQIDNCTEGCVILARTKEYCSIFHRKIR-- 360
           SVGGTTDNIEESCATFATRALGLTSPLWTTHQIDNCTEGCVILARTKEYCS+FHRKIR  
Sbjct: 338 SVGGTTDNIEESCATFATRALGLTSPLWTTHQIDNCTEGCVILARTKEYCSVFHRKIREK 397

Query: 361 --------------------------------LEVLECREVSWPDADIEAKYCIEDCGWP 420
                                           LEVLECREV+WPDADIEAKYCIE+CGWP
Sbjct: 398 KVKKLYLALAAAPVPIGIITHYMRPINIAPRLLEVLECREVAWPDADIEAKYCIEECGWP 457

Query: 421 SKEKAYECKINLLTGRTHQIRAQLADCGAPLVGDSMYMPAAVAEMASPGLNPFGKCKKEY 480
           SK KAYECKINLLTGRTHQIRAQLA+CGAPLVGDSMYMPAAVAEMA+PGLNPFGKCKKEY
Sbjct: 458 SKTKAYECKINLLTGRTHQIRAQLANCGAPLVGDSMYMPAAVAEMANPGLNPFGKCKKEY 503

Query: 481 ASEEDKGIAATEWIALHGKEPAVAIGLQAYEISWDSGEHIYNARTPWWKQEQL 498
           A+EEDK IA T+WI+ HGKEPA+AIGLQAYEISWDS EHIYNA TPWWKQEQL
Sbjct: 518 ANEEDKEIAVTDWISRHGKEPAMAIGLQAYEISWDSMEHIYNAGTPWWKQEQL 503

[Close]
BLAST of HG10021085 vs. NCBI nr
Match: KAG6573200.1 (RNA pseudouridine synthase 6, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 747.7 bits (1929), Expect = 6.6e-212
Identity = 385/546 (70.51%), Postives = 409/546 (74.91%), Query Frame = 0 

Query: 1   MLASVNIALVASHGCRGLTTSLSLLRTLARARARLSAASCSNYFPPRRSLSSKSSAFPCE 60
           MLAS+NIALVA++GCRGL TSL+L RTLAR RA  SA+ C NYF  RRSLSSKSSAFPCE
Sbjct: 2   MLASMNIALVAANGCRGLGTSLALQRTLARTRANFSASVCGNYFAARRSLSSKSSAFPCE 61

Query: 61  SSITDVTITKTATT--ENGFDRRREAPESIAVVGCHQSEVRVYRLWGFVDGLRKNVGQED 120
           SS+TDV +TK+ATT  ENG                                         
Sbjct: 62  SSVTDVAVTKSATTFAENG----------------------------------------- 121

Query: 121 EDLRKGKKREREGREGREGIVLWSFQYPQYHRLLPCPSFNEPPRVEHMVVLEEGPVMEYI 180
                                     YPQYHRLLPCPSF+ PPRVEH+VVLE GPVMEYI
Sbjct: 122 --------------------------YPQYHRLLPCPSFSGPPRVEHLVVLEGGPVMEYI 181

Query: 181 CKSLDLPPLYVADLIHFGAVYYALVCPRPPQTATPEQIRLFKKFTEPSFLKGRKSIKGKT 240
            KSLDLPPLYVADLIHFGAVYYALVCP+PP TATPEQIRLFKKFT+PSFLKGRKSIKGKT
Sbjct: 182 SKSLDLPPLYVADLIHFGAVYYALVCPQPPPTATPEQIRLFKKFTQPSFLKGRKSIKGKT 241

Query: 241 VREAQKTFRITHVDEFVEIGTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGT 300
           VREAQKTFRIT +DEFVE+GTYLR+HVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGT
Sbjct: 242 VREAQKTFRITRIDEFVEVGTYLRIHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGT 301

Query: 301 SVGGTTDNIEESCATFATRALGLTSPLWTTHQIDNCTEGCVILARTKEYCSIFHRKIR-- 360
           SVGGTTDNIEESCATFATRALGLTSPLWTTHQIDNCTEGCVILARTKEYCS+FHRKIR  
Sbjct: 302 SVGGTTDNIEESCATFATRALGLTSPLWTTHQIDNCTEGCVILARTKEYCSVFHRKIREK 361

Query: 361 ---------------------------------------------LEVLECREVSWPDAD 420
                                                        LEVLECREV+WPDAD
Sbjct: 362 KVKKLYLALAAAPVPIGIITHYMRPINIAPRLVSEDCIDGYNLCQLEVLECREVAWPDAD 421

Query: 421 IEAKYCIEDCGWPSKEKAYECKINLLTGRTHQIRAQLADCGAPLVGDSMYMPAAVAEMAS 480
           IEAKYCIE+CGWPSK KAYECKINLLTGRTHQIRAQLA+CGAPLVGDSMYMPAAVAEMA+
Sbjct: 422 IEAKYCIEECGWPSKTKAYECKINLLTGRTHQIRAQLANCGAPLVGDSMYMPAAVAEMAN 480

Query: 481 PGLNPFGKCKKEYASEEDKGIAATEWIALHGKEPAVAIGLQAYEISWDSGEHIYNARTPW 498
           PGLNPFGKCKKEYA+EEDK IA T+WI+ HGKEPA+AIGLQAYEISWDS EHIYNA TPW
Sbjct: 482 PGLNPFGKCKKEYANEEDKEIAVTDWISRHGKEPAMAIGLQAYEISWDSMEHIYNAGTPW 480

[Close]
BLAST of HG10021085 vs. NCBI nr
Match: XP_022994289.1 (RNA pseudouridine synthase 6, chloroplastic-like isoform X1 [Cucurbita maxima] >XP_022994290.1 RNA pseudouridine synthase 6, chloroplastic-like isoform X1 [Cucurbita maxima] >XP_022994291.1 RNA pseudouridine synthase 6, chloroplastic-like isoform X1 [Cucurbita maxima] >XP_022994292.1 RNA pseudouridine synthase 6, chloroplastic-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 746.9 bits (1927), Expect = 1.1e-211
Identity = 386/546 (70.70%), Postives = 408/546 (74.73%), Query Frame = 0 

Query: 1   MLASVNIALVASHGCRGLTTSLSLLRTLARARARLSAASCSNYFPPRRSLSSKSSAFPCE 60
           MLAS+NIALVA++GCRGL+TSL+L RTLAR RA  SA  C NYF  RRSLSSKSSAFPCE
Sbjct: 1   MLASMNIALVAANGCRGLSTSLALQRTLARTRANFSATVCGNYFAARRSLSSKSSAFPCE 60

Query: 61  SSITDVTITKTATT--ENGFDRRREAPESIAVVGCHQSEVRVYRLWGFVDGLRKNVGQED 120
           SS+TDV +T+TATT  E+G                                         
Sbjct: 61  SSVTDVAVTQTATTFAESG----------------------------------------- 120

Query: 121 EDLRKGKKREREGREGREGIVLWSFQYPQYHRLLPCPSFNEPPRVEHMVVLEEGPVMEYI 180
                                     YPQYHRLLPCPSF+ PPRVEH+VVLE GPVMEYI
Sbjct: 121 --------------------------YPQYHRLLPCPSFSGPPRVEHLVVLEGGPVMEYI 180

Query: 181 CKSLDLPPLYVADLIHFGAVYYALVCPRPPQTATPEQIRLFKKFTEPSFLKGRKSIKGKT 240
            KSLDLPPLYVADLIHFGAVYYALVCP+PP TATPEQIRLFKKFTEPSFLKGRKSIKGKT
Sbjct: 181 AKSLDLPPLYVADLIHFGAVYYALVCPQPPPTATPEQIRLFKKFTEPSFLKGRKSIKGKT 240

Query: 241 VREAQKTFRITHVDEFVEIGTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGT 300
           VREAQKTFRIT +DEFVE+GTYLR+HVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGT
Sbjct: 241 VREAQKTFRITRIDEFVEVGTYLRIHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGT 300

Query: 301 SVGGTTDNIEESCATFATRALGLTSPLWTTHQIDNCTEGCVILARTKEYCSIFHRKIR-- 360
           SVGGTTDNIEESCATFATRALGLTSPLWTTHQIDNCTEGCVILARTKEYCS+FHRKIR  
Sbjct: 301 SVGGTTDNIEESCATFATRALGLTSPLWTTHQIDNCTEGCVILARTKEYCSVFHRKIREK 360

Query: 361 ---------------------------------------------LEVLECREVSWPDAD 420
                                                        LEVLECREVSWP AD
Sbjct: 361 KVKKLYLALAAAPVPIGIITHYMRPINIAPRLVSEDCIDGYNLCQLEVLECREVSWPGAD 420

Query: 421 IEAKYCIEDCGWPSKEKAYECKINLLTGRTHQIRAQLADCGAPLVGDSMYMPAAVAEMAS 480
           IEAKYCIE+CGWPSK KAYECKINLLTGRTHQIRAQLA+CGAPLVGDSMYMPAAVAEMA+
Sbjct: 421 IEAKYCIEECGWPSKTKAYECKINLLTGRTHQIRAQLANCGAPLVGDSMYMPAAVAEMAN 479

Query: 481 PGLNPFGKCKKEYASEEDKGIAATEWIALHGKEPAVAIGLQAYEISWDSGEHIYNARTPW 498
           PGL+PFGKCKKEYASEEDK IA TEWI+ HGKEPA+AIGLQAYEISWDS EHIYNA TPW
Sbjct: 481 PGLSPFGKCKKEYASEEDKEIAVTEWISRHGKEPAMAIGLQAYEISWDSMEHIYNAGTPW 479

[Close]
BLAST of HG10021085 vs. ExPASy Swiss-Prot
Match: Q9SVS0 (RNA pseudouridine synthase 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g21770 PE=2 SV=1)

HSP 1 Score: 529.6 bits (1363), Expect = 3.7e-149
Identity = 260/400 (65.00%), Postives = 295/400 (73.75%), Query Frame = 0 

Query: 145 YPQYHRLLPCPSFNEPPRVEHMVVLEEGP-VMEYICKSLDLPPLYVADLIHFGAVYYALV 204
           Y +Y+RL+PCP++N PPR+EHMVVLE+   V E+I K LDLPPLYVADLI FGAV+YALV
Sbjct: 73  YHEYNRLMPCPAYNLPPRIEHMVVLEDDVLVSEFISKQLDLPPLYVADLIRFGAVHYALV 132

Query: 205 CPRPPQTATPEQIRLFKKFTEPSFLKGRKSIKGKTVREAQKTFRITHVDEFVEIGTYLRV 264
           CP+PP TATPE+I LF++ T PS LK R SIKGKTVREAQKTFR+TH +++ E GTYLRV
Sbjct: 133 CPKPPPTATPEEIILFEEVTSPSVLKKRSSIKGKTVREAQKTFRVTHTNQYAEAGTYLRV 192

Query: 265 HVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTTDNIEESCATFATRALGLTS 324
           HVHPKR PRCYEIDWKSRI+AVT+SYV+LDKPAGT+VGGTTDNIEESCATFA+RAL L  
Sbjct: 193 HVHPKRSPRCYEIDWKSRIVAVTDSYVILDKPAGTTVGGTTDNIEESCATFASRALDLPE 252

Query: 325 PLWTTHQIDNCTEGCVILARTKEYCSIFHRKIR--------------------------- 384
           PL TTHQIDNCTEGCV+ ARTKEYCS+FH KIR                           
Sbjct: 253 PLKTTHQIDNCTEGCVVFARTKEYCSVFHTKIRNKEVKKLYRALAAAPLPIGIISHYMRP 312

Query: 385 --------------------LEVLECREVSWPDADIEAKYCIEDCGWPSKEKAYECKINL 444
                               LEVLEC+++ WPDA  E K+ IEDCGW SKE AYEC INL
Sbjct: 313 KNMAPRLVAEDSIQGWHLCQLEVLECKKIPWPDAATEKKHDIEDCGWTSKEFAYECTINL 372

Query: 445 LTGRTHQIRAQLADCGAPLVGDSMYMPAAVAEMASPGLNPFGKCKKEYASEED-KGIAAT 494
           LTG+THQIRAQLA CGAPLVGDSMYMPAA+AEM +P  NP+GK KK Y  EE+ K  A  
Sbjct: 373 LTGKTHQIRAQLAACGAPLVGDSMYMPAAIAEMGNPDTNPYGKAKKHYTMEENQKETAVA 432

[Close]
BLAST of HG10021085 vs. ExPASy Swiss-Prot
Match: A3BN26 (RNA pseudouridine synthase 6, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0660400 PE=2 SV=1)

HSP 1 Score: 473.4 bits (1217), Expect = 3.2e-132
Identity = 228/400 (57.00%), Postives = 281/400 (70.25%), Query Frame = 0 

Query: 145 YPQYHRLLPCPSFNEPPRVEHMVVLEEGPVMEYICKSLDLPPLYVADLIHFGAVYYALVC 204
           YP Y RLLPCP  ++PPR+EH+V  E+   +++I +SL LPPLYVADLI FGAVYYALV 
Sbjct: 71  YPVYGRLLPCPLQDDPPRIEHLVAREDEVAVDFISRSLTLPPLYVADLIKFGAVYYALVA 130

Query: 205 PRPPQTATPEQIRLFKKFTEPSFLKGRKSIKGKTVREAQKTFRITHVDEFVEIGTYLRVH 264
           P+PP  A PE +R+F++ TEPS L  RKSIKGKTVREAQKTFR+T  ++ +E GTYLRVH
Sbjct: 131 PQPPPHAAPEHVRIFREVTEPSVLCRRKSIKGKTVREAQKTFRVTDPNQRLEAGTYLRVH 190

Query: 265 VHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTTDNIEESCATFATRALGLTSP 324
           VHPKRFPRCYEIDWKSR+IAVT++YVVLDKPA TSVGG TDNIEESC  F +RALGL +P
Sbjct: 191 VHPKRFPRCYEIDWKSRVIAVTDNYVVLDKPAATSVGGATDNIEESCVVFTSRALGLETP 250

Query: 325 LWTTHQIDNCTEGCVILARTKEYCSIFHRKIR---------------------------- 384
           L TTHQIDNC+EGCV+L++TKE+CS+FH  IR                            
Sbjct: 251 LMTTHQIDNCSEGCVVLSKTKEFCSVFHGMIREKQVNKRYLALTTAPVSTGIITHYMRPI 310

Query: 385 -------------------LEVLECREVSWPDADIEAKYCIEDCGWPSKEKAYECKINLL 444
                              +E+L+C++V WP + I   + +++CGWP +E AYECKINLL
Sbjct: 311 NRAPRLVSEDHIKGWHVCQMEILDCKKVPWPSSLIRKVHKVDNCGWPQQEAAYECKINLL 370

Query: 445 TGRTHQIRAQLADCGAPLVGDSMYMPAAVAEMASPGLNPFGKCKKEYASEEDKGIAATEW 496
           TG+THQIRAQLA  G P+VGDS YM AA+A + +P +NPFG+  + Y SE++K  A   W
Sbjct: 371 TGKTHQIRAQLAAIGTPIVGDSAYMTAAMAAIVNPSINPFGRWGQNYDSEDEKAAAVEAW 430

[Close]
BLAST of HG10021085 vs. ExPASy Swiss-Prot
Match: Q8PHN2 (Ribosomal large subunit pseudouridine synthase D OS=Xanthomonas axonopodis pv. citri (strain 306) OX=190486 GN=rluD PE=3 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 5.1e-05
Identity = 48/170 (28.24%), Postives = 71/170 (41.76%), Query Frame = 0 

Query: 287 ESYVVLDKPAGTSV---GGTTDNIEESCATFATRALGLTSPLWTTHQIDNCTEGCVILAR 346
           E  +V+DKPAG  V    G  D    +   F   AL         H++D  T G +++AR
Sbjct: 97  EQVLVIDKPAGLVVHPGAGNPDRTLVNALLFRDPALASVPRAGVVHRLDKDTSGVMVVAR 156

Query: 347 TKEYCSIFHRKIRLEVLECREV---------------SWPDADIE------AKYCIEDCG 406
           T     +  +   +E L  REV                  +A I+       K  + D G
Sbjct: 157 T-----VQAQTALVEQLSAREVHRQYLAVVVGALVSGGTANAPIDRHPRDRLKMAVRDDG 216

Query: 407 ------WPSKEK-----AYECKINLLTGRTHQIRAQLADCGAPLVGDSMY 422
                 +  +E+     A EC++   TGRTHQIR  +A   +P+VGD +Y
Sbjct: 217 RDAVTHYRLRERFRAHTALECRLE--TGRTHQIRVHMAHLKSPIVGDPLY 259

[Close]
BLAST of HG10021085 vs. ExPASy Swiss-Prot
Match: Q8IZ73 (RNA pseudouridylate synthase domain-containing protein 2 OS=Homo sapiens OX=9606 GN=RPUSD2 PE=1 SV=2)

HSP 1 Score: 50.8 bits (120), Expect = 5.1e-05
Identity = 51/192 (26.56%), Postives = 73/192 (38.02%), Query Frame = 0 

Query: 260 YLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTTDNIEESCATFATRAL 319
           +LR  VH    P   E     R++A  E  VV+DKP+   V         +   F     
Sbjct: 206 FLRNTVHRHEPPVTAE---PIRLLAENEDVVVVDKPSSIPV-HPCGRFRHNTVIFILGKE 265

Query: 320 GLTSPLWTTHQIDNCTEGCVILARTKEYCSIFHRKIRLEVLE----CR-EVSWPDADIEA 379
                L   H++D  T G ++ A+T       H ++R   LE    CR E  +P  ++  
Sbjct: 266 HQLKELHPLHRLDRLTSGVLMFAKTAAVSERIHEQVRDRQLEKEYVCRVEGEFPTEEVTC 325

Query: 380 K-------YCIEDCGWPSKEKAYE--------------CKINLLTGRTHQIRAQLADCGA 426
           K       Y +  C    + K  E               +   LTGRTHQIR  L   G 
Sbjct: 326 KEPILVVSYKVGVCRVDPRGKPCETVFQRLSYNGQSSVVRCRPLTGRTHQIRVHLQFLGH 385

[Close]
BLAST of HG10021085 vs. ExPASy Swiss-Prot
Match: Q8P682 (Ribosomal large subunit pseudouridine synthase D OS=Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25) OX=190485 GN=rluD PE=3 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 8.6e-05
Identity = 51/198 (25.76%), Postives = 80/198 (40.40%), Query Frame = 0 

Query: 255 VEIGTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSV---GGTTDNIEESC 314
           V++    + H  P+  P          ++   +  +V+DKPAG  V    G  D    + 
Sbjct: 73  VQVVLETQTHAAPQDIP--------LNVLYEDDHVLVIDKPAGLVVHPGAGNPDGTLVNA 132

Query: 315 ATFATRALGLTSPLWTTHQIDNCTEGCVILARTKEYCSIF---------HRKIRLEVLEC 374
             F    L         H++D  T G +++ART +  +           HR+  L V+  
Sbjct: 133 LLFRDPNLAAVPRAGVVHRLDKDTSGVMVVARTLQAQTALVEQLSARDVHRQY-LAVVVG 192

Query: 375 REVSWPDADI--------EAKYCIEDCG------WPSKEK-----AYECKINLLTGRTHQ 422
             VS   AD           K  + D G      +  +E+     A EC++   TGRTHQ
Sbjct: 193 ALVSGGTADAPIDRHPRDRLKMAVRDDGRDAVTHYRLRERFRAHTALECRLE--TGRTHQ 252

[Close]
BLAST of HG10021085 vs. ExPASy TrEMBL
Match: A0A5D3BM17 (RNA pseudouridine synthase 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005930 PE=4 SV=1)

HSP 1 Score: 753.1 bits (1943), Expect = 7.6e-214
Identity = 394/547 (72.03%), Postives = 408/547 (74.59%), Query Frame = 0 

Query: 1   MLASVNIALVASHGCRGL-TTSLSLLRTLARARARLSAASCSNYFPPRRSLSSKSSAFPC 60
           MLAS+NIALVA+HGCRGL +TSLSLLRTLAR RA  SAASC +YF PRRS SS SSAFPC
Sbjct: 1   MLASMNIALVATHGCRGLGSTSLSLLRTLARTRASPSAASCCDYFAPRRSFSSISSAFPC 60

Query: 61  ESSITDVTITKTAT--TENGFDRRREAPESIAVVGCHQSEVRVYRLWGFVDGLRKNVGQE 120
           +SSITDVT+TKTAT   ENG                                        
Sbjct: 61  KSSITDVTVTKTATDSAENG---------------------------------------- 120

Query: 121 DEDLRKGKKREREGREGREGIVLWSFQYPQYHRLLPCPSFNEPPRVEHMVVLEEGPVMEY 180
                                      YPQYHRLLPCPSF++ PRVEHMVVLE GPVMEY
Sbjct: 121 ---------------------------YPQYHRLLPCPSFSKLPRVEHMVVLEAGPVMEY 180

Query: 181 ICKSLDLPPLYVADLIHFGAVYYALVCPRPPQTATPEQIRLFKKFTEPSFLKGRKSIKGK 240
           ICKSLDLPPLYVADLIHFGAVYYALVCP+PP+TATPEQIRLFKKFTEPSFLKGRKSIKGK
Sbjct: 181 ICKSLDLPPLYVADLIHFGAVYYALVCPQPPKTATPEQIRLFKKFTEPSFLKGRKSIKGK 240

Query: 241 TVREAQKTFRITHVDEFVEIGTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAG 300
           TVREAQKTFRITHVDEFVE+GTYLRVHVHPKRFPRCY+IDWKSRIIAVTESYVVLDKPAG
Sbjct: 241 TVREAQKTFRITHVDEFVEVGTYLRVHVHPKRFPRCYDIDWKSRIIAVTESYVVLDKPAG 300

Query: 301 TSVGGTTDNIEESCATFATRALGLTSPLWTTHQIDNCTEGCVILARTKEYCSIFHRKIR- 360
           TSVGGTTDNIEESCATFATRALGLTSPLWTTHQIDNCTEGCVILARTKEYCSIFHRKIR 
Sbjct: 301 TSVGGTTDNIEESCATFATRALGLTSPLWTTHQIDNCTEGCVILARTKEYCSIFHRKIRE 360

Query: 361 ----------------------------------------------LEVLECREVSWPDA 420
                                                         LEVLECREVSWPD 
Sbjct: 361 KRVMKHYLALSAAPVPMGIITHYMRPINIAPRLVSKDCIDGWILCQLEVLECREVSWPDV 420

Query: 421 DIEAKYCIEDCGWPSKEKAYECKINLLTGRTHQIRAQLADCGAPLVGDSMYMPAAVAEMA 480
           DIEAKYC ED GWPSK+KAYECKINLLTGRTHQIRAQLADCGAPLVGDSMYMPA VAEM 
Sbjct: 421 DIEAKYCFEDGGWPSKKKAYECKINLLTGRTHQIRAQLADCGAPLVGDSMYMPAVVAEMG 480

Query: 481 SPGLNPFGKCKKEYASEEDKGIAATEWIALHGKEPAVAIGLQAYEISWDSGEHIYNARTP 498
           SPGLNPFGKCKKEY SEEDK  A  EWIALHGKEPAVAIGLQAYEISWDS EHIYNA TP
Sbjct: 481 SPGLNPFGKCKKEYTSEEDKETAVAEWIALHGKEPAVAIGLQAYEISWDSREHIYNAGTP 480

[Close]
BLAST of HG10021085 vs. ExPASy TrEMBL
Match: A0A1S3B303 (RNA pseudouridine synthase 6, chloroplastic-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC107990285 PE=4 SV=1)

HSP 1 Score: 753.1 bits (1943), Expect = 7.6e-214
Identity = 394/547 (72.03%), Postives = 408/547 (74.59%), Query Frame = 0 

Query: 1   MLASVNIALVASHGCRGL-TTSLSLLRTLARARARLSAASCSNYFPPRRSLSSKSSAFPC 60
           MLAS+NIALVA+HGCRGL +TSLSLLRTLAR RA  SAASC +YF PRRS SS SSAFPC
Sbjct: 1   MLASMNIALVATHGCRGLGSTSLSLLRTLARTRASPSAASCCDYFAPRRSFSSISSAFPC 60

Query: 61  ESSITDVTITKTAT--TENGFDRRREAPESIAVVGCHQSEVRVYRLWGFVDGLRKNVGQE 120
           +SSITDVT+TKTAT   ENG                                        
Sbjct: 61  KSSITDVTVTKTATDSAENG---------------------------------------- 120

Query: 121 DEDLRKGKKREREGREGREGIVLWSFQYPQYHRLLPCPSFNEPPRVEHMVVLEEGPVMEY 180
                                      YPQYHRLLPCPSF++ PRVEHMVVLE GPVMEY
Sbjct: 121 ---------------------------YPQYHRLLPCPSFSKLPRVEHMVVLEAGPVMEY 180

Query: 181 ICKSLDLPPLYVADLIHFGAVYYALVCPRPPQTATPEQIRLFKKFTEPSFLKGRKSIKGK 240
           ICKSLDLPPLYVADLIHFGAVYYALVCP+PP+TATPEQIRLFKKFTEPSFLKGRKSIKGK
Sbjct: 181 ICKSLDLPPLYVADLIHFGAVYYALVCPQPPKTATPEQIRLFKKFTEPSFLKGRKSIKGK 240

Query: 241 TVREAQKTFRITHVDEFVEIGTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAG 300
           TVREAQKTFRITHVDEFVE+GTYLRVHVHPKRFPRCY+IDWKSRIIAVTESYVVLDKPAG
Sbjct: 241 TVREAQKTFRITHVDEFVEVGTYLRVHVHPKRFPRCYDIDWKSRIIAVTESYVVLDKPAG 300

Query: 301 TSVGGTTDNIEESCATFATRALGLTSPLWTTHQIDNCTEGCVILARTKEYCSIFHRKIR- 360
           TSVGGTTDNIEESCATFATRALGLTSPLWTTHQIDNCTEGCVILARTKEYCSIFHRKIR 
Sbjct: 301 TSVGGTTDNIEESCATFATRALGLTSPLWTTHQIDNCTEGCVILARTKEYCSIFHRKIRE 360

Query: 361 ----------------------------------------------LEVLECREVSWPDA 420
                                                         LEVLECREVSWPD 
Sbjct: 361 KRVMKHYLALSAAPVPMGIITHYMRPINIAPRLVSKDCIDGWILCQLEVLECREVSWPDV 420

Query: 421 DIEAKYCIEDCGWPSKEKAYECKINLLTGRTHQIRAQLADCGAPLVGDSMYMPAAVAEMA 480
           DIEAKYC ED GWPSK+KAYECKINLLTGRTHQIRAQLADCGAPLVGDSMYMPA VAEM 
Sbjct: 421 DIEAKYCFEDGGWPSKKKAYECKINLLTGRTHQIRAQLADCGAPLVGDSMYMPAVVAEMG 480

Query: 481 SPGLNPFGKCKKEYASEEDKGIAATEWIALHGKEPAVAIGLQAYEISWDSGEHIYNARTP 498
           SPGLNPFGKCKKEY SEEDK  A  EWIALHGKEPAVAIGLQAYEISWDS EHIYNA TP
Sbjct: 481 SPGLNPFGKCKKEYTSEEDKETAVAEWIALHGKEPAVAIGLQAYEISWDSREHIYNAGTP 480

[Close]
BLAST of HG10021085 vs. ExPASy TrEMBL
Match: A0A6J1JVD9 (RNA pseudouridine synthase 6, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111490064 PE=4 SV=1)

HSP 1 Score: 746.9 bits (1927), Expect = 5.5e-212
Identity = 386/546 (70.70%), Postives = 408/546 (74.73%), Query Frame = 0 

Query: 1   MLASVNIALVASHGCRGLTTSLSLLRTLARARARLSAASCSNYFPPRRSLSSKSSAFPCE 60
           MLAS+NIALVA++GCRGL+TSL+L RTLAR RA  SA  C NYF  RRSLSSKSSAFPCE
Sbjct: 1   MLASMNIALVAANGCRGLSTSLALQRTLARTRANFSATVCGNYFAARRSLSSKSSAFPCE 60

Query: 61  SSITDVTITKTATT--ENGFDRRREAPESIAVVGCHQSEVRVYRLWGFVDGLRKNVGQED 120
           SS+TDV +T+TATT  E+G                                         
Sbjct: 61  SSVTDVAVTQTATTFAESG----------------------------------------- 120

Query: 121 EDLRKGKKREREGREGREGIVLWSFQYPQYHRLLPCPSFNEPPRVEHMVVLEEGPVMEYI 180
                                     YPQYHRLLPCPSF+ PPRVEH+VVLE GPVMEYI
Sbjct: 121 --------------------------YPQYHRLLPCPSFSGPPRVEHLVVLEGGPVMEYI 180

Query: 181 CKSLDLPPLYVADLIHFGAVYYALVCPRPPQTATPEQIRLFKKFTEPSFLKGRKSIKGKT 240
            KSLDLPPLYVADLIHFGAVYYALVCP+PP TATPEQIRLFKKFTEPSFLKGRKSIKGKT
Sbjct: 181 AKSLDLPPLYVADLIHFGAVYYALVCPQPPPTATPEQIRLFKKFTEPSFLKGRKSIKGKT 240

Query: 241 VREAQKTFRITHVDEFVEIGTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGT 300
           VREAQKTFRIT +DEFVE+GTYLR+HVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGT
Sbjct: 241 VREAQKTFRITRIDEFVEVGTYLRIHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGT 300

Query: 301 SVGGTTDNIEESCATFATRALGLTSPLWTTHQIDNCTEGCVILARTKEYCSIFHRKIR-- 360
           SVGGTTDNIEESCATFATRALGLTSPLWTTHQIDNCTEGCVILARTKEYCS+FHRKIR  
Sbjct: 301 SVGGTTDNIEESCATFATRALGLTSPLWTTHQIDNCTEGCVILARTKEYCSVFHRKIREK 360

Query: 361 ---------------------------------------------LEVLECREVSWPDAD 420
                                                        LEVLECREVSWP AD
Sbjct: 361 KVKKLYLALAAAPVPIGIITHYMRPINIAPRLVSEDCIDGYNLCQLEVLECREVSWPGAD 420

Query: 421 IEAKYCIEDCGWPSKEKAYECKINLLTGRTHQIRAQLADCGAPLVGDSMYMPAAVAEMAS 480
           IEAKYCIE+CGWPSK KAYECKINLLTGRTHQIRAQLA+CGAPLVGDSMYMPAAVAEMA+
Sbjct: 421 IEAKYCIEECGWPSKTKAYECKINLLTGRTHQIRAQLANCGAPLVGDSMYMPAAVAEMAN 479

Query: 481 PGLNPFGKCKKEYASEEDKGIAATEWIALHGKEPAVAIGLQAYEISWDSGEHIYNARTPW 498
           PGL+PFGKCKKEYASEEDK IA TEWI+ HGKEPA+AIGLQAYEISWDS EHIYNA TPW
Sbjct: 481 PGLSPFGKCKKEYASEEDKEIAVTEWISRHGKEPAMAIGLQAYEISWDSMEHIYNAGTPW 479

[Close]
BLAST of HG10021085 vs. ExPASy TrEMBL
Match: A0A6J1GUJ2 (RNA pseudouridine synthase 6, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111457066 PE=4 SV=1)

HSP 1 Score: 745.3 bits (1923), Expect = 1.6e-211
Identity = 384/546 (70.33%), Postives = 407/546 (74.54%), Query Frame = 0 

Query: 1   MLASVNIALVASHGCRGLTTSLSLLRTLARARARLSAASCSNYFPPRRSLSSKSSAFPCE 60
           MLAS+NIALVA++GCRGL TSL+L RTLAR RA  SA +C NYF  RRSLSSKSSAFPCE
Sbjct: 1   MLASMNIALVAANGCRGLGTSLALQRTLARTRANFSATACGNYFAARRSLSSKSSAFPCE 60

Query: 61  SSITDVTITKTATT--ENGFDRRREAPESIAVVGCHQSEVRVYRLWGFVDGLRKNVGQED 120
           SS+TDV +T++ TT  ENG                                         
Sbjct: 61  SSVTDVAVTQSTTTFAENG----------------------------------------- 120

Query: 121 EDLRKGKKREREGREGREGIVLWSFQYPQYHRLLPCPSFNEPPRVEHMVVLEEGPVMEYI 180
                                     YPQYHRLLPCPSF+ PPRVEH+VVLE GPVMEYI
Sbjct: 121 --------------------------YPQYHRLLPCPSFSGPPRVEHLVVLEGGPVMEYI 180

Query: 181 CKSLDLPPLYVADLIHFGAVYYALVCPRPPQTATPEQIRLFKKFTEPSFLKGRKSIKGKT 240
            KSLDLPPLYVADLIHFGAVYYALVCP+PP TATPEQIRLFKKFT+PSFLKGRKSIKGKT
Sbjct: 181 SKSLDLPPLYVADLIHFGAVYYALVCPQPPPTATPEQIRLFKKFTQPSFLKGRKSIKGKT 240

Query: 241 VREAQKTFRITHVDEFVEIGTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGT 300
           VREAQKTFRIT +DEFVE+GTYLR+HVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGT
Sbjct: 241 VREAQKTFRITRIDEFVEVGTYLRIHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGT 300

Query: 301 SVGGTTDNIEESCATFATRALGLTSPLWTTHQIDNCTEGCVILARTKEYCSIFHRKIR-- 360
           SVGGTTDNIEESCATFATRALGLTSPLWTTHQIDNCTEGCVILARTKEYCS+FHRKIR  
Sbjct: 301 SVGGTTDNIEESCATFATRALGLTSPLWTTHQIDNCTEGCVILARTKEYCSVFHRKIREK 360

Query: 361 ---------------------------------------------LEVLECREVSWPDAD 420
                                                        LEVLECREV+WPDAD
Sbjct: 361 KVKKLYLALAAAPVPIGIITHYMRPINIAPRLVSEDCIDGYNLCQLEVLECREVAWPDAD 420

Query: 421 IEAKYCIEDCGWPSKEKAYECKINLLTGRTHQIRAQLADCGAPLVGDSMYMPAAVAEMAS 480
           IEAKYCIE+CGWPSK KAYECKINLLTGRTHQIRAQLA+CGAPLVGDSMYMPAAVAEMA+
Sbjct: 421 IEAKYCIEECGWPSKTKAYECKINLLTGRTHQIRAQLANCGAPLVGDSMYMPAAVAEMAN 479

Query: 481 PGLNPFGKCKKEYASEEDKGIAATEWIALHGKEPAVAIGLQAYEISWDSGEHIYNARTPW 498
           PGLNPFGKCKKEYASEEDK  A TEWI+ HGKEPA+AIGLQAYEISWDS EHIYNA TPW
Sbjct: 481 PGLNPFGKCKKEYASEEDKESAVTEWISRHGKEPAMAIGLQAYEISWDSMEHIYNAGTPW 479

[Close]
BLAST of HG10021085 vs. ExPASy TrEMBL
Match: A0A0A0LX47 (PseudoU_synth_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G064140 PE=4 SV=1)

HSP 1 Score: 737.6 bits (1903), Expect = 3.3e-209
Identity = 386/546 (70.70%), Postives = 404/546 (73.99%), Query Frame = 0 

Query: 1   MLASVNIALVASHGCRGL-TTSLSLLRTLARARARLSAASCSNYFPPRRSLSSKSSAFPC 60
           MLAS+NIALVA+HGCR L +TS SLLRTLAR RA LSAAS  +YF PRRSL SKSSAFPC
Sbjct: 1   MLASMNIALVATHGCRTLSSTSPSLLRTLARPRASLSAASSRDYFAPRRSLGSKSSAFPC 60

Query: 61  ESSITDVTI-TKTATTENGFDRRREAPESIAVVGCHQSEVRVYRLWGFVDGLRKNVGQED 120
           +SSITDVT+ T T + ENG                                         
Sbjct: 61  KSSITDVTVKTATNSAENG----------------------------------------- 120

Query: 121 EDLRKGKKREREGREGREGIVLWSFQYPQYHRLLPCPSFNEPPRVEHMVVLEEGPVMEYI 180
                                     YPQYHRLLPCPSF++PPRVEHMVVLE GPVMEYI
Sbjct: 121 --------------------------YPQYHRLLPCPSFSKPPRVEHMVVLEAGPVMEYI 180

Query: 181 CKSLDLPPLYVADLIHFGAVYYALVCPRPPQTATPEQIRLFKKFTEPSFLKGRKSIKGKT 240
           CKSL+LPPLYVADLIHFGAVYYALVCP+PP+TATPEQIRLFKKFTEPSFLKGRKSIKGKT
Sbjct: 181 CKSLNLPPLYVADLIHFGAVYYALVCPQPPKTATPEQIRLFKKFTEPSFLKGRKSIKGKT 240

Query: 241 VREAQKTFRITHVDEFVEIGTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGT 300
           VREAQKTFRITHVDEFVE+GTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGT
Sbjct: 241 VREAQKTFRITHVDEFVEVGTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGT 300

Query: 301 SVGGTTDNIEESCATFATRALGLTSPLWTTHQIDNCTEGCVILARTKEYCSIFHRKIR-- 360
           SVGGTTDNIEESCATFATRALGLTSPLWTTHQIDNCTEGCVI ARTKEYCSIFH KIR  
Sbjct: 301 SVGGTTDNIEESCATFATRALGLTSPLWTTHQIDNCTEGCVIFARTKEYCSIFHGKIREK 360

Query: 361 ---------------------------------------------LEVLECREVSWPDAD 420
                                                        LEVLECREVSWPDAD
Sbjct: 361 KVMKLYLALSAAPVPMGIITHYMRPINIAPRLVSKDCIDGWIICQLEVLECREVSWPDAD 420

Query: 421 IEAKYCIEDCGWPSKEKAYECKINLLTGRTHQIRAQLADCGAPLVGDSMYMPAAVAEMAS 480
           IEAKY +EDCGWPSK+KAYEC+INLLTGRTHQIRAQLADCGAPLVGDSMYMPA VAEM S
Sbjct: 421 IEAKYRVEDCGWPSKKKAYECRINLLTGRTHQIRAQLADCGAPLVGDSMYMPAVVAEMGS 479

Query: 481 PGLNPFGKCKKEYASEEDKGIAATEWIALHGKEPAVAIGLQAYEISWDSGEHIYNARTPW 498
           PGLNPFGKCKKEY +EEDK  A  EW ALHGKEPAVAIGLQAYEISWDS EH YNA TPW
Sbjct: 481 PGLNPFGKCKKEYTNEEDKETAVAEWSALHGKEPAVAIGLQAYEISWDSREHSYNAGTPW 479

[Close]
BLAST of HG10021085 vs. TAIR 10
Match: AT4G21770.1 (Pseudouridine synthase family protein )

HSP 1 Score: 529.6 bits (1363), Expect = 2.6e-150
Identity = 260/400 (65.00%), Postives = 295/400 (73.75%), Query Frame = 0 

Query: 145 YPQYHRLLPCPSFNEPPRVEHMVVLEEGP-VMEYICKSLDLPPLYVADLIHFGAVYYALV 204
           Y +Y+RL+PCP++N PPR+EHMVVLE+   V E+I K LDLPPLYVADLI FGAV+YALV
Sbjct: 73  YHEYNRLMPCPAYNLPPRIEHMVVLEDDVLVSEFISKQLDLPPLYVADLIRFGAVHYALV 132

Query: 205 CPRPPQTATPEQIRLFKKFTEPSFLKGRKSIKGKTVREAQKTFRITHVDEFVEIGTYLRV 264
           CP+PP TATPE+I LF++ T PS LK R SIKGKTVREAQKTFR+TH +++ E GTYLRV
Sbjct: 133 CPKPPPTATPEEIILFEEVTSPSVLKKRSSIKGKTVREAQKTFRVTHTNQYAEAGTYLRV 192

Query: 265 HVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTTDNIEESCATFATRALGLTS 324
           HVHPKR PRCYEIDWKSRI+AVT+SYV+LDKPAGT+VGGTTDNIEESCATFA+RAL L  
Sbjct: 193 HVHPKRSPRCYEIDWKSRIVAVTDSYVILDKPAGTTVGGTTDNIEESCATFASRALDLPE 252

Query: 325 PLWTTHQIDNCTEGCVILARTKEYCSIFHRKIR--------------------------- 384
           PL TTHQIDNCTEGCV+ ARTKEYCS+FH KIR                           
Sbjct: 253 PLKTTHQIDNCTEGCVVFARTKEYCSVFHTKIRNKEVKKLYRALAAAPLPIGIISHYMRP 312

Query: 385 --------------------LEVLECREVSWPDADIEAKYCIEDCGWPSKEKAYECKINL 444
                               LEVLEC+++ WPDA  E K+ IEDCGW SKE AYEC INL
Sbjct: 313 KNMAPRLVAEDSIQGWHLCQLEVLECKKIPWPDAATEKKHDIEDCGWTSKEFAYECTINL 372

Query: 445 LTGRTHQIRAQLADCGAPLVGDSMYMPAAVAEMASPGLNPFGKCKKEYASEED-KGIAAT 494
           LTG+THQIRAQLA CGAPLVGDSMYMPAA+AEM +P  NP+GK KK Y  EE+ K  A  
Sbjct: 373 LTGKTHQIRAQLAACGAPLVGDSMYMPAAIAEMGNPDTNPYGKAKKHYTMEENQKETAVA 432

The following BLAST results are available for this feature:
BLAST of HG10021085 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038894645.15.4e-22274.18RNA pseudouridine synthase 6, chloroplastic isoform X1 [Benincasa hispida][more]
XP_008441255.11.6e-21372.03PREDICTED: RNA pseudouridine synthase 6, chloroplastic-like isoform X1 [Cucumis ... [more]
KAG7012376.12.1e-21372.23RNA pseudouridine synthase 6, chloroplastic, partial [Cucurbita argyrosperma sub... [more]
KAG6573200.16.6e-21270.51RNA pseudouridine synthase 6, chloroplastic, partial [Cucurbita argyrosperma sub... [more]
XP_022994289.11.1e-21170.70RNA pseudouridine synthase 6, chloroplastic-like isoform X1 [Cucurbita maxima] >... [more]
BLAST of HG10021085 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9SVS03.7e-14965.00RNA pseudouridine synthase 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=A... [more]
A3BN263.2e-13257.00RNA pseudouridine synthase 6, chloroplastic OS=Oryza sativa subsp. japonica OX=3... [more]
Q8PHN25.1e-0528.24Ribosomal large subunit pseudouridine synthase D OS=Xanthomonas axonopodis pv. c... [more]
Q8IZ735.1e-0526.56RNA pseudouridylate synthase domain-containing protein 2 OS=Homo sapiens OX=9606... [more]
Q8P6828.6e-0525.76Ribosomal large subunit pseudouridine synthase D OS=Xanthomonas campestris pv. c... [more]
BLAST of HG10021085 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3BM177.6e-21472.03RNA pseudouridine synthase 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca... [more]
A0A1S3B3037.6e-21472.03RNA pseudouridine synthase 6, chloroplastic-like isoform X1 OS=Cucumis melo OX=3... [more]
A0A6J1JVD95.5e-21270.70RNA pseudouridine synthase 6, chloroplastic-like isoform X1 OS=Cucurbita maxima ... [more]
A0A6J1GUJ21.6e-21170.33RNA pseudouridine synthase 6, chloroplastic-like OS=Cucurbita moschata OX=3662 G... [more]
A0A0A0LX473.3e-20970.70PseudoU_synth_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G06... [more]
BLAST of HG10021085 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G21770.12.6e-15065.00Pseudouridine synthase family protein [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.2350.10Pseudouridine synthasecoord: 386..482
e-value: 4.8E-9
score: 38.1
NoneNo IPR availableGENE3D3.30.2350.10Pseudouridine synthasecoord: 281..385
e-value: 1.9E-7
score: 33.0
NoneNo IPR availablePANTHERPTHR21600MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASEcoord: 143..356
NoneNo IPR availablePANTHERPTHR21600MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASEcoord: 357..492
NoneNo IPR availablePANTHERPTHR21600:SF52RNA PSEUDOURIDINE SYNTHASE 6, CHLOROPLASTICcoord: 143..356
coord: 357..492
IPR006145Pseudouridine synthase, RsuA/RluA-likePFAMPF00849PseudoU_synth_2coord: 289..355
e-value: 1.9E-8
score: 34.6
IPR006145Pseudouridine synthase, RsuA/RluA-likeCDDcd02869PseudoU_synth_RluA_likecoord: 289..434
e-value: 4.70756E-23
score: 94.3264
IPR020103Pseudouridine synthase, catalytic domain superfamilySUPERFAMILY55120Pseudouridine synthasecoord: 273..427

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10021085.1HG10021085.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000455 enzyme-directed rRNA pseudouridine synthesis
biological_process GO:0001522 pseudouridine synthesis
biological_process GO:0009451 RNA modification
molecular_function GO:0009982 pseudouridine synthase activity
molecular_function GO:0003723 RNA binding