HG10021043 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10021043
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptionp55
LocationChr05: 4887945 .. 4888409 (-)
RNA-Seq ExpressionHG10021043
SyntenyHG10021043
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGATCACTACCAAGTAATAAGCAATGCACTCAATGGTCCTCCATCATCACCCAGCAGTCTGATCGAAACTTCGGCCATTGTCAAAAGCTTCTCTTCCAATGAAGTTAAGTCCATTCAAGCAGAGCCACATACTCCAGAAGTAGTCAGTAGCCGTGGTAAAAGGCCTGCCACCGACAGCCCCCAACATGAAGCCCCACCTCAAAGGCAACGAACCGACAGGCCAGGGTTCGACCCATTGGATGGTCTGATAGTGAAGATGGAGGAAACGGTTACGATGCTGAAAAGAATGAGCGGGAAAAAGGATTTGACGAGTGATCCTTTGTTGGGTCGCTTTGTGTCTGCGCACACTGAGCTCATGGCTTGCACTGCCCAGCTTATAATGGCTAAATCAACCAGGAAAGCATCGAAAGTCAAACGCATTAAAGGAATGGCTGGAGAGAAGAACATGAACGAAATCTGA

mRNA sequence

ATGGGTGATCACTACCAAGTAATAAGCAATGCACTCAATGGTCCTCCATCATCACCCAGCAGTCTGATCGAAACTTCGGCCATTGTCAAAAGCTTCTCTTCCAATGAAGTTAAGTCCATTCAAGCAGAGCCACATACTCCAGAAGTAGTCAGTAGCCGTGGTAAAAGGCCTGCCACCGACAGCCCCCAACATGAAGCCCCACCTCAAAGGCAACGAACCGACAGGCCAGGGTTCGACCCATTGGATGGTCTGATAGTGAAGATGGAGGAAACGGTTACGATGCTGAAAAGAATGAGCGGGAAAAAGGATTTGACGAGTGATCCTTTGTTGGGTCGCTTTGTGTCTGCGCACACTGAGCTCATGGCTTGCACTGCCCAGCTTATAATGGCTAAATCAACCAGGAAAGCATCGAAAGTCAAACGCATTAAAGGAATGGCTGGAGAGAAGAACATGAACGAAATCTGA

Coding sequence (CDS)

ATGGGTGATCACTACCAAGTAATAAGCAATGCACTCAATGGTCCTCCATCATCACCCAGCAGTCTGATCGAAACTTCGGCCATTGTCAAAAGCTTCTCTTCCAATGAAGTTAAGTCCATTCAAGCAGAGCCACATACTCCAGAAGTAGTCAGTAGCCGTGGTAAAAGGCCTGCCACCGACAGCCCCCAACATGAAGCCCCACCTCAAAGGCAACGAACCGACAGGCCAGGGTTCGACCCATTGGATGGTCTGATAGTGAAGATGGAGGAAACGGTTACGATGCTGAAAAGAATGAGCGGGAAAAAGGATTTGACGAGTGATCCTTTGTTGGGTCGCTTTGTGTCTGCGCACACTGAGCTCATGGCTTGCACTGCCCAGCTTATAATGGCTAAATCAACCAGGAAAGCATCGAAAGTCAAACGCATTAAAGGAATGGCTGGAGAGAAGAACATGAACGAAATCTGA

Protein sequence

MGDHYQVISNALNGPPSSPSSLIETSAIVKSFSSNEVKSIQAEPHTPEVVSSRGKRPATDSPQHEAPPQRQRTDRPGFDPLDGLIVKMEETVTMLKRMSGKKDLTSDPLLGRFVSAHTELMACTAQLIMAKSTRKASKVKRIKGMAGEKNMNEI
Homology
BLAST of HG10021043 vs. NCBI nr
Match: KAA0056836.1 (p55 [Cucumis melo var. makuwa] >TYJ99337.1 p55 [Cucumis melo var. makuwa])

HSP 1 Score: 73.6 bits (179), Expect = 1.7e-09
Identity = 60/145 (41.38%), Postives = 81/145 (55.86%), Query Frame = 0

Query: 2   GDHYQVISNALNGPPSSPSSLIETSAIVKSFSSNEVKSIQAEPHTPEVVSSRGKRPATDS 61
           G+   VI +A+  PP SP          +  +    +S   EPHTP+ V  + KRPA+ S
Sbjct: 3   GEFNHVIHHAIFNPPLSPG---------RKNAPKVTESSSVEPHTPDAVLGK-KRPASVS 62

Query: 62  P----QHEAPP-QRQRTDR-----PGFDPLDGLIVKMEETVTMLKRMSGKKD-LTSDPLL 121
           P    +H+ PP Q+ +TD          P+  LI K+E+ + MLKR+  K D L SDPLL
Sbjct: 63  PNDVSEHDHPPTQKPKTDNAEKASSSGVPMKDLIGKVEDMLKMLKRVVRKNDKLVSDPLL 122

Query: 122 GRFVSAHTELMACTAQLIMAKSTRK 136
             FVSA T LMACTA+L ++KST K
Sbjct: 123 ACFVSAQTLLMACTAEL-LSKSTGK 136

BLAST of HG10021043 vs. NCBI nr
Match: KGN64496.1 (hypothetical protein Csa_013860 [Cucumis sativus])

HSP 1 Score: 70.9 bits (172), Expect = 1.1e-08
Identity = 60/140 (42.86%), Postives = 78/140 (55.71%), Query Frame = 0

Query: 8   ISNALNGPPSSPSSLIETSAIVKSFSSNEVKSIQAEPHTPEVVSSRGKRPATDSP----Q 67
           +++ +  PPSSPS         K  +         EP TP+ V  + KRPA  SP    Q
Sbjct: 7   LAHGIFNPPSSPS---------KKNTPKFPGRSSVEPQTPDPVHGK-KRPAPVSPNDDFQ 66

Query: 68  HEAPP-QRQRTDR-----PGFDPLDGLIVKMEETVTMLKRMSGKKD-LTSDPLLGRFVSA 127
           H+ PP Q+++TD          P+  LI K+E+ V MLKR+  KKD L SDPLL  FVSA
Sbjct: 67  HDRPPTQKRKTDNAEEGSSSDVPMKDLIEKVEDMVKMLKRVGRKKDKLVSDPLLACFVSA 126

Query: 128 HTELMACTAQLIMAKSTRKA 137
              L ACTA+LI ++STRKA
Sbjct: 127 QALLTACTAELI-SRSTRKA 135

BLAST of HG10021043 vs. ExPASy TrEMBL
Match: A0A5D3BJN2 (p55 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005530 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 8.3e-10
Identity = 60/145 (41.38%), Postives = 81/145 (55.86%), Query Frame = 0

Query: 2   GDHYQVISNALNGPPSSPSSLIETSAIVKSFSSNEVKSIQAEPHTPEVVSSRGKRPATDS 61
           G+   VI +A+  PP SP          +  +    +S   EPHTP+ V  + KRPA+ S
Sbjct: 3   GEFNHVIHHAIFNPPLSPG---------RKNAPKVTESSSVEPHTPDAVLGK-KRPASVS 62

Query: 62  P----QHEAPP-QRQRTDR-----PGFDPLDGLIVKMEETVTMLKRMSGKKD-LTSDPLL 121
           P    +H+ PP Q+ +TD          P+  LI K+E+ + MLKR+  K D L SDPLL
Sbjct: 63  PNDVSEHDHPPTQKPKTDNAEKASSSGVPMKDLIGKVEDMLKMLKRVVRKNDKLVSDPLL 122

Query: 122 GRFVSAHTELMACTAQLIMAKSTRK 136
             FVSA T LMACTA+L ++KST K
Sbjct: 123 ACFVSAQTLLMACTAEL-LSKSTGK 136

BLAST of HG10021043 vs. ExPASy TrEMBL
Match: A0A0A0LX14 (p55 OS=Cucumis sativus OX=3659 GN=Csa_1G059750 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 5.4e-09
Identity = 60/140 (42.86%), Postives = 78/140 (55.71%), Query Frame = 0

Query: 8   ISNALNGPPSSPSSLIETSAIVKSFSSNEVKSIQAEPHTPEVVSSRGKRPATDSP----Q 67
           +++ +  PPSSPS         K  +         EP TP+ V  + KRPA  SP    Q
Sbjct: 7   LAHGIFNPPSSPS---------KKNTPKFPGRSSVEPQTPDPVHGK-KRPAPVSPNDDFQ 66

Query: 68  HEAPP-QRQRTDR-----PGFDPLDGLIVKMEETVTMLKRMSGKKD-LTSDPLLGRFVSA 127
           H+ PP Q+++TD          P+  LI K+E+ V MLKR+  KKD L SDPLL  FVSA
Sbjct: 67  HDRPPTQKRKTDNAEEGSSSDVPMKDLIEKVEDMVKMLKRVGRKKDKLVSDPLLACFVSA 126

Query: 128 HTELMACTAQLIMAKSTRKA 137
              L ACTA+LI ++STRKA
Sbjct: 127 QALLTACTAELI-SRSTRKA 135

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0056836.11.7e-0941.38p55 [Cucumis melo var. makuwa] >TYJ99337.1 p55 [Cucumis melo var. makuwa][more]
KGN64496.11.1e-0842.86hypothetical protein Csa_013860 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BJN28.3e-1041.38p55 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005530 PE=4 SV=1[more]
A0A0A0LX145.4e-0942.86p55 OS=Cucumis sativus OX=3659 GN=Csa_1G059750 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 36..82
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10021043.1HG10021043.1mRNA