HG10021042 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10021042
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptionp55
LocationChr05: 4877361 .. 4877882 (-)
RNA-Seq ExpressionHG10021042
SyntenyHG10021042
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGAGTACAACCAAGTTATAAACAAAGCACTCATTTGTCCCCCCTCATCGCCCAGTAGTAAAAAACCTGCAGCCAAATTCACTCACAGCTCCTCCGATCAGTACTTTCAAGCAGAGCCACATACTCCAGAAGTAGTCCTTGGTACGAAGAGGCCAGCGCCGATTAGCCCCGGCGACAGCTCCCGACATGAGCCGCCAGCCCAAAGGCGACGAACCAACAACTCGGAGGGTTCGAGCTCGGGCGTGCCAATGGAAGATCTGATAGGGAAAGTGGAGGAAATGGTTAAGATGTTGAAAAGGGTGGCAGGGAATAAGGATTTGGTGAGTGATCCTTTGTTGGGTTGCTTTGTGTCTGCGCAGACTCTGCTCATGGCTTGTACTGCGGAGCTTATATCCAGATCAACCACAAAAGCAAAGCCACTAGATCATCAGAGCAGTGAAGGTTCTATTAATTACAGTTCTATTACTGATGGAAGTGGAGAGAAAAAGAGGATTCAAAAGTCTAAATCCACCAATTAA

mRNA sequence

ATGGGTGAGTACAACCAAGTTATAAACAAAGCACTCATTTGTCCCCCCTCATCGCCCAGTAGTAAAAAACCTGCAGCCAAATTCACTCACAGCTCCTCCGATCAGTACTTTCAAGCAGAGCCACATACTCCAGAAGTAGTCCTTGGTACGAAGAGGCCAGCGCCGATTAGCCCCGGCGACAGCTCCCGACATGAGCCGCCAGCCCAAAGGCGACGAACCAACAACTCGGAGGGTTCGAGCTCGGGCGTGCCAATGGAAGATCTGATAGGGAAAGTGGAGGAAATGGTTAAGATGTTGAAAAGGGTGGCAGGGAATAAGGATTTGGTGAGTGATCCTTTGTTGGGTTGCTTTGTGTCTGCGCAGACTCTGCTCATGGCTTGTACTGCGGAGCTTATATCCAGATCAACCACAAAAGCAAAGCCACTAGATCATCAGAGCAGTGAAGGTTCTATTAATTACAGTTCTATTACTGATGGAAGTGGAGAGAAAAAGAGGATTCAAAAGTCTAAATCCACCAATTAA

Coding sequence (CDS)

ATGGGTGAGTACAACCAAGTTATAAACAAAGCACTCATTTGTCCCCCCTCATCGCCCAGTAGTAAAAAACCTGCAGCCAAATTCACTCACAGCTCCTCCGATCAGTACTTTCAAGCAGAGCCACATACTCCAGAAGTAGTCCTTGGTACGAAGAGGCCAGCGCCGATTAGCCCCGGCGACAGCTCCCGACATGAGCCGCCAGCCCAAAGGCGACGAACCAACAACTCGGAGGGTTCGAGCTCGGGCGTGCCAATGGAAGATCTGATAGGGAAAGTGGAGGAAATGGTTAAGATGTTGAAAAGGGTGGCAGGGAATAAGGATTTGGTGAGTGATCCTTTGTTGGGTTGCTTTGTGTCTGCGCAGACTCTGCTCATGGCTTGTACTGCGGAGCTTATATCCAGATCAACCACAAAAGCAAAGCCACTAGATCATCAGAGCAGTGAAGGTTCTATTAATTACAGTTCTATTACTGATGGAAGTGGAGAGAAAAAGAGGATTCAAAAGTCTAAATCCACCAATTAA

Protein sequence

MGEYNQVINKALICPPSSPSSKKPAAKFTHSSSDQYFQAEPHTPEVVLGTKRPAPISPGDSSRHEPPAQRRRTNNSEGSSSGVPMEDLIGKVEEMVKMLKRVAGNKDLVSDPLLGCFVSAQTLLMACTAELISRSTTKAKPLDHQSSEGSINYSSITDGSGEKKRIQKSKSTN
Homology
BLAST of HG10021042 vs. NCBI nr
Match: KAA0056836.1 (p55 [Cucumis melo var. makuwa] >TYJ99337.1 p55 [Cucumis melo var. makuwa])

HSP 1 Score: 169.9 bits (429), Expect = 2.0e-38
Identity = 109/184 (59.24%), Postives = 129/184 (70.11%), Query Frame = 0

Query: 2   GEYNQVINKALICPPSSPSSKKPAAKFTHSSSDQYFQAEPHTPEVVLGTKRPAPISPGDS 61
           GE+N VI+ A+  PP SP  +K A K T SSS      EPHTP+ VLG KRPA +SP D 
Sbjct: 3   GEFNHVIHHAIFNPPLSP-GRKNAPKVTESSS-----VEPHTPDAVLGKKRPASVSPNDV 62

Query: 62  SRHE-PPAQRRRTNNSE-GSSSGVPMEDLIGKVEEMVKMLKRVAGNKD-LVSDPLLGCFV 121
           S H+ PP Q+ +T+N+E  SSSGVPM+DLIGKVE+M+KMLKRV    D LVSDPLL CFV
Sbjct: 63  SEHDHPPTQKPKTDNAEKASSSGVPMKDLIGKVEDMLKMLKRVVRKNDKLVSDPLLACFV 122

Query: 122 SAQTLLMACTAELISRSTTKAK-PLDHQSSEGSINYSSIT---------DGSGEKKRIQK 173
           SAQTLLMACTAEL+S+ST K K PL HQ S+ SINY S T          GSGE+K  +K
Sbjct: 123 SAQTLLMACTAELLSKSTGKKKPPLVHQHSDSSINYGSTTTADPDAAAPGGSGERK-FKK 179

BLAST of HG10021042 vs. NCBI nr
Match: KGN64496.1 (hypothetical protein Csa_013860 [Cucumis sativus])

HSP 1 Score: 166.0 bits (419), Expect = 2.9e-37
Identity = 107/173 (61.85%), Postives = 122/173 (70.52%), Query Frame = 0

Query: 2   GEYNQVINKALICPPSSPSSKKPAAKFTHSSSDQYFQAEPHTPEVVLGTKRPAPISPGDS 61
           GE N  +   +  PPSSP SKK   KF   SS      EP TP+ V G KRPAP+SP D 
Sbjct: 3   GELN--LAHGIFNPPSSP-SKKNTPKFPGRSS-----VEPQTPDPVHGKKRPAPVSPNDD 62

Query: 62  SRHE-PPAQRRRTNNS-EGSSSGVPMEDLIGKVEEMVKMLKRVAGNKD-LVSDPLLGCFV 121
            +H+ PP Q+R+T+N+ EGSSS VPM+DLI KVE+MVKMLKRV   KD LVSDPLL CFV
Sbjct: 63  FQHDRPPTQKRKTDNAEEGSSSDVPMKDLIEKVEDMVKMLKRVGRKKDKLVSDPLLACFV 122

Query: 122 SAQTLLMACTAELISRSTTKAKPLDHQSSEGSINYSSIT---DGSGEKKRIQK 169
           SAQ LL ACTAELISRST KAKPL HQ S+ SINY S T    GSGE K+I+K
Sbjct: 123 SAQALLTACTAELISRSTRKAKPLVHQHSDLSINYGSTTTAAGGSGETKKIKK 167

BLAST of HG10021042 vs. NCBI nr
Match: XP_008440827.1 (PREDICTED: uncharacterized protein LOC103485133 isoform X1 [Cucumis melo] >XP_008440836.1 PREDICTED: uncharacterized protein LOC103485133 isoform X2 [Cucumis melo])

HSP 1 Score: 104.0 bits (258), Expect = 1.3e-18
Identity = 72/166 (43.37%), Postives = 98/166 (59.04%), Query Frame = 0

Query: 6   QVINKALICPPSSPSSKKPAAKFTHSSSDQYFQAEPHTPEVVLGTKRPAPISPGDSSRHE 65
           Q+++ + +  PSSPS    +     ++SD   +  P TPE   G K     S  + S  +
Sbjct: 195 QLLSASTVNEPSSPSKLSAS-----NNSDPNIEVGPDTPENSRGKKTSGSNSRDNRSEEK 254

Query: 66  PPAQ-RRRTNNSEGSSSGVPMEDLIGKVEEMVKMLKRVAGNKDLVSDPLLGCFVSAQTLL 125
              + + +T+ + GSS  VP++DLI +++EMV MLK       LV+ PLLGCFVSAQTLL
Sbjct: 255 RETKIKAQTDQNSGSSLTVPLDDLIARMKEMVNMLK---SEGRLVNSPLLGCFVSAQTLL 314

Query: 126 MACTAELISRSTTKAKPLDHQSSEGSINYSSIT------DGSGEKK 165
           MAC  EL+S S  K+K L HQ SE S+NYSS T      DG+GEKK
Sbjct: 315 MACATELLSISIGKSKALHHQGSEISVNYSSTTTNDTAADGNGEKK 352

BLAST of HG10021042 vs. NCBI nr
Match: KAA0056835.1 (p55 [Cucumis melo var. makuwa] >TYJ99336.1 p55 [Cucumis melo var. makuwa])

HSP 1 Score: 104.0 bits (258), Expect = 1.3e-18
Identity = 72/166 (43.37%), Postives = 98/166 (59.04%), Query Frame = 0

Query: 6   QVINKALICPPSSPSSKKPAAKFTHSSSDQYFQAEPHTPEVVLGTKRPAPISPGDSSRHE 65
           Q+++ + +  PSSPS    +     ++SD   +  P TPE   G K     S  + S  +
Sbjct: 184 QLLSASTVNEPSSPSKLSAS-----NNSDPNIEVGPDTPENSRGKKTSGSNSRDNRSEEK 243

Query: 66  PPAQ-RRRTNNSEGSSSGVPMEDLIGKVEEMVKMLKRVAGNKDLVSDPLLGCFVSAQTLL 125
              + + +T+ + GSS  VP++DLI +++EMV MLK       LV+ PLLGCFVSAQTLL
Sbjct: 244 RETKIKAQTDQNSGSSLTVPLDDLIARMKEMVNMLK---SEGRLVNSPLLGCFVSAQTLL 303

Query: 126 MACTAELISRSTTKAKPLDHQSSEGSINYSSIT------DGSGEKK 165
           MAC  EL+S S  K+K L HQ SE S+NYSS T      DG+GEKK
Sbjct: 304 MACATELLSISIGKSKALHHQGSEISVNYSSTTTNDTAADGNGEKK 341

BLAST of HG10021042 vs. NCBI nr
Match: KAG6584107.1 (hypothetical protein SDJN03_20039, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 85.5 bits (210), Expect = 4.9e-13
Identity = 57/143 (39.86%), Postives = 78/143 (54.55%), Query Frame = 0

Query: 1   MGEYNQVINKALICPPSSPSSKKPAAKFTHSSSDQYFQAEPHTPEVVLGTKRPAPISPGD 60
           MG  + VI++ +   P SP   +P+       ++      P TP +    KR AP SP  
Sbjct: 1   MGGDSSVISEIIFSAPRSP---RPST--DSKETEPISPPNPVTPNLRGSRKRSAP-SPMS 60

Query: 61  SSRHEPPAQRRRTN--------NSEGSSSGVPMEDLIGKVEEMVKMLKRVAGNKDLVSDP 120
           +  HEPP QRRR +          +   S +P+  LIG +EE+VK LKRV G + L+ DP
Sbjct: 61  NPEHEPPTQRRRDSGDGNKLEYGEDADWSSIPLARLIGNMEEVVKSLKRVGGQEGLMIDP 120

Query: 121 LLGCFVSAQTLLMACTAELISRS 136
           LLGC VS+QT +M C A LISR+
Sbjct: 121 LLGCLVSSQTSMMLCLAHLISRT 137

BLAST of HG10021042 vs. ExPASy TrEMBL
Match: A0A5D3BJN2 (p55 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005530 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 9.6e-39
Identity = 109/184 (59.24%), Postives = 129/184 (70.11%), Query Frame = 0

Query: 2   GEYNQVINKALICPPSSPSSKKPAAKFTHSSSDQYFQAEPHTPEVVLGTKRPAPISPGDS 61
           GE+N VI+ A+  PP SP  +K A K T SSS      EPHTP+ VLG KRPA +SP D 
Sbjct: 3   GEFNHVIHHAIFNPPLSP-GRKNAPKVTESSS-----VEPHTPDAVLGKKRPASVSPNDV 62

Query: 62  SRHE-PPAQRRRTNNSE-GSSSGVPMEDLIGKVEEMVKMLKRVAGNKD-LVSDPLLGCFV 121
           S H+ PP Q+ +T+N+E  SSSGVPM+DLIGKVE+M+KMLKRV    D LVSDPLL CFV
Sbjct: 63  SEHDHPPTQKPKTDNAEKASSSGVPMKDLIGKVEDMLKMLKRVVRKNDKLVSDPLLACFV 122

Query: 122 SAQTLLMACTAELISRSTTKAK-PLDHQSSEGSINYSSIT---------DGSGEKKRIQK 173
           SAQTLLMACTAEL+S+ST K K PL HQ S+ SINY S T          GSGE+K  +K
Sbjct: 123 SAQTLLMACTAELLSKSTGKKKPPLVHQHSDSSINYGSTTTADPDAAAPGGSGERK-FKK 179

BLAST of HG10021042 vs. ExPASy TrEMBL
Match: A0A0A0LX14 (p55 OS=Cucumis sativus OX=3659 GN=Csa_1G059750 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 1.4e-37
Identity = 107/173 (61.85%), Postives = 122/173 (70.52%), Query Frame = 0

Query: 2   GEYNQVINKALICPPSSPSSKKPAAKFTHSSSDQYFQAEPHTPEVVLGTKRPAPISPGDS 61
           GE N  +   +  PPSSP SKK   KF   SS      EP TP+ V G KRPAP+SP D 
Sbjct: 3   GELN--LAHGIFNPPSSP-SKKNTPKFPGRSS-----VEPQTPDPVHGKKRPAPVSPNDD 62

Query: 62  SRHE-PPAQRRRTNNS-EGSSSGVPMEDLIGKVEEMVKMLKRVAGNKD-LVSDPLLGCFV 121
            +H+ PP Q+R+T+N+ EGSSS VPM+DLI KVE+MVKMLKRV   KD LVSDPLL CFV
Sbjct: 63  FQHDRPPTQKRKTDNAEEGSSSDVPMKDLIEKVEDMVKMLKRVGRKKDKLVSDPLLACFV 122

Query: 122 SAQTLLMACTAELISRSTTKAKPLDHQSSEGSINYSSIT---DGSGEKKRIQK 169
           SAQ LL ACTAELISRST KAKPL HQ S+ SINY S T    GSGE K+I+K
Sbjct: 123 SAQALLTACTAELISRSTRKAKPLVHQHSDLSINYGSTTTAAGGSGETKKIKK 167

BLAST of HG10021042 vs. ExPASy TrEMBL
Match: A0A1S3B2P2 (uncharacterized protein LOC103485133 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103485133 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 6.5e-19
Identity = 72/166 (43.37%), Postives = 98/166 (59.04%), Query Frame = 0

Query: 6   QVINKALICPPSSPSSKKPAAKFTHSSSDQYFQAEPHTPEVVLGTKRPAPISPGDSSRHE 65
           Q+++ + +  PSSPS    +     ++SD   +  P TPE   G K     S  + S  +
Sbjct: 195 QLLSASTVNEPSSPSKLSAS-----NNSDPNIEVGPDTPENSRGKKTSGSNSRDNRSEEK 254

Query: 66  PPAQ-RRRTNNSEGSSSGVPMEDLIGKVEEMVKMLKRVAGNKDLVSDPLLGCFVSAQTLL 125
              + + +T+ + GSS  VP++DLI +++EMV MLK       LV+ PLLGCFVSAQTLL
Sbjct: 255 RETKIKAQTDQNSGSSLTVPLDDLIARMKEMVNMLK---SEGRLVNSPLLGCFVSAQTLL 314

Query: 126 MACTAELISRSTTKAKPLDHQSSEGSINYSSIT------DGSGEKK 165
           MAC  EL+S S  K+K L HQ SE S+NYSS T      DG+GEKK
Sbjct: 315 MACATELLSISIGKSKALHHQGSEISVNYSSTTTNDTAADGNGEKK 352

BLAST of HG10021042 vs. ExPASy TrEMBL
Match: A0A5A7UTH3 (p55 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005520 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 6.5e-19
Identity = 72/166 (43.37%), Postives = 98/166 (59.04%), Query Frame = 0

Query: 6   QVINKALICPPSSPSSKKPAAKFTHSSSDQYFQAEPHTPEVVLGTKRPAPISPGDSSRHE 65
           Q+++ + +  PSSPS    +     ++SD   +  P TPE   G K     S  + S  +
Sbjct: 184 QLLSASTVNEPSSPSKLSAS-----NNSDPNIEVGPDTPENSRGKKTSGSNSRDNRSEEK 243

Query: 66  PPAQ-RRRTNNSEGSSSGVPMEDLIGKVEEMVKMLKRVAGNKDLVSDPLLGCFVSAQTLL 125
              + + +T+ + GSS  VP++DLI +++EMV MLK       LV+ PLLGCFVSAQTLL
Sbjct: 244 RETKIKAQTDQNSGSSLTVPLDDLIARMKEMVNMLK---SEGRLVNSPLLGCFVSAQTLL 303

Query: 126 MACTAELISRSTTKAKPLDHQSSEGSINYSSIT------DGSGEKK 165
           MAC  EL+S S  K+K L HQ SE S+NYSS T      DG+GEKK
Sbjct: 304 MACATELLSISIGKSKALHHQGSEISVNYSSTTTNDTAADGNGEKK 341

BLAST of HG10021042 vs. ExPASy TrEMBL
Match: A0A0A0LRJ2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G060770 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.5e-07
Identity = 50/98 (51.02%), Postives = 61/98 (62.24%), Query Frame = 0

Query: 77  EGSSS-GVPMEDLIGKVEEMVKMLKRVAGNKD-LVSDPLLGCFVSAQTLLMACTAELISR 136
           EGSSS G   +DLI K+EE V+ +K V   KD LVS PLL CFV+AQTLL+ CT +L   
Sbjct: 44  EGSSSKGKATDDLIVKMEETVEKMKSVWCRKDNLVSSPLLACFVAAQTLLVVCTIQLFYT 103

Query: 137 STTKAKPLDHQSSEGSINYSSIT----DGSGEKKRIQK 169
           ST      DHQ SE S+  SS T    D S E+ +I+K
Sbjct: 104 STG-----DHQRSEVSVKDSSTTNEAADRSVEENKIKK 136

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0056836.12.0e-3859.24p55 [Cucumis melo var. makuwa] >TYJ99337.1 p55 [Cucumis melo var. makuwa][more]
KGN64496.12.9e-3761.85hypothetical protein Csa_013860 [Cucumis sativus][more]
XP_008440827.11.3e-1843.37PREDICTED: uncharacterized protein LOC103485133 isoform X1 [Cucumis melo] >XP_00... [more]
KAA0056835.11.3e-1843.37p55 [Cucumis melo var. makuwa] >TYJ99336.1 p55 [Cucumis melo var. makuwa][more]
KAG6584107.14.9e-1339.86hypothetical protein SDJN03_20039, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BJN29.6e-3959.24p55 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005530 PE=4 SV=1[more]
A0A0A0LX141.4e-3761.85p55 OS=Cucumis sativus OX=3659 GN=Csa_1G059750 PE=4 SV=1[more]
A0A1S3B2P26.5e-1943.37uncharacterized protein LOC103485133 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A5A7UTH36.5e-1943.37p55 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005520 PE=4 SV=1[more]
A0A0A0LRJ21.5e-0751.02Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G060770 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 12..39
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 136..173
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 136..160
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 12..88

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10021042.1HG10021042.1mRNA