HG10021034 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10021034
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Unknown protein
Location	Chr05: 4788968 .. 4790516 (+)
RNA-Seq Expression	HG10021034
Synteny	HG10021034

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGGTTTTCTGAGTCCCCGAAGATCGAAACCGGGAACAATAACAAAACCCGAGGAGAAAGGAAGTGATGAAAAAGAAACCCATCTCAAAACCAACCATAGATCTTCAAGTACTTCAAGTTTGAACCCATCAAAATCCACAACGAAGCATCAACCACAAATAAACAACAGTATTTTGAGCTCCAAATCTGCCCCTGAATCAAGCTTTACATCACCAGCTTCCTCAGCTCGGACAACCAAATCAGCAGCTCAACCTACGACTTCAAAGAAGAATGGAAAAGGTGGGACTGCCTCTCGTGCTAAAGCAACCGTTACCAAGGATAATAATGTGAGTCATAAGTATTTTGATTCTCCAAATGCTTCTCCCACCCATTTCCCCACCTCTGTCAAAGTTGCTGATTCTGTTCTTCACACTCAATTACAACATCGTCTCGCTGTTGACGACGGTGAGCTTACAGAATACTTACAAGTTTCTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTCAATTCTTCTGATTCTTCCATTTACTCCCCTTTGGTAAAAGTTTAGTTCTTAGCTACACTACGAATTTATTCCATAAACTTTTGAGGTTAATATCTATTTAATTTCTCAAACTTTTTAAAATTTACAGATCTATATAGTATGAGAATATGAAAGCGTGATTAATTAAGAAAGGTTTTAAAAAATCAATTTTTTTAACAATAAACAAGAGAAAAGAGATCAGGAAAAGTATCGGGACATCTCAACTAGGTTGATACCTCCTTAGCACCCTCATCATATTTTCTATATTGTTATTACCTATATTAACATGGTGCATCTGACTCATTCATAAGACTTCAAAAATCTACTTGGCTTAAAGTAATCCTATAGTTTGAGTAACCTCCTTGAAATTTTGTTACTTATAGGTGAAAATAGTGTTTATAAGCTTAATTTCAAATAATGGTTCCCAAACGAGGCTTAATTTCTTTAGTTTTCAAAACTTGGCTTGGATTTTGAAAACACACAACCTTTGTAATAGGACCTAAAATTTTTACTCTTTTTTTCTTGAAAATCTTGTGTAGGTAGGGATGATGTTGCGAACAACGTCCTTCATACAAATTCGATAAACGATTCAGTGGGTTCAGATACAAAGGAACAATATGATTCTGAAAGCAATACTCCGACAATATTATTTAAAATTTACGAGGAGATTGCATCTCATCGTAAAGGAAACACATCCATTAAATCATACTTCAGAAATCTCAAGGCATTATGGGATGAACCAGCTCCAATCTTCAGTGAATTGCCTCAATCTTCCTCCAATAATGCAATTGTGGAACAGAGTGTGCTCATGGAAAGAGAAAAACTAATGCAATTTCTTTTGGGAATAAACGTTTCTTATTCCTCCCTTTGCTCCAATATCCTTCTTTTAAACCCATCTCCAACGGTCGATGAAGCTTATTCTCTCATACTTCAAGAACAAAGAAGTAGGAAATTGGGGAAAAAGAATTCAATGTAGTAATGCAATAACAGTTGGTTTTTCTTCAGAAGCAACTTTCCAATAA

mRNA sequence

ATGAGAGGTTTTCTGAGTCCCCGAAGATCGAAACCGGGAACAATAACAAAACCCGAGGAGAAAGGAAGTGATGAAAAAGAAACCCATCTCAAAACCAACCATAGATCTTCAAGTACTTCAAGTTTGAACCCATCAAAATCCACAACGAAGCATCAACCACAAATAAACAACAGTATTTTGAGCTCCAAATCTGCCCCTGAATCAAGCTTTACATCACCAGCTTCCTCAGCTCGGACAACCAAATCAGCAGCTCAACCTACGACTTCAAAGAAGAATGGAAAAGGTGGGACTGCCTCTCGTGCTAAAGCAACCGTTACCAAGGATAATAATGTGAGTCATAAGTATTTTGATTCTCCAAATGCTTCTCCCACCCATTTCCCCACCTCTGTCAAAGTTGCTGATTCTGTTCTTCACACTCAATTACAACATCGTCTCGCTGTTGACGACGAAGCAACTTTCCAATAA

Coding sequence (CDS)

ATGAGAGGTTTTCTGAGTCCCCGAAGATCGAAACCGGGAACAATAACAAAACCCGAGGAGAAAGGAAGTGATGAAAAAGAAACCCATCTCAAAACCAACCATAGATCTTCAAGTACTTCAAGTTTGAACCCATCAAAATCCACAACGAAGCATCAACCACAAATAAACAACAGTATTTTGAGCTCCAAATCTGCCCCTGAATCAAGCTTTACATCACCAGCTTCCTCAGCTCGGACAACCAAATCAGCAGCTCAACCTACGACTTCAAAGAAGAATGGAAAAGGTGGGACTGCCTCTCGTGCTAAAGCAACCGTTACCAAGGATAATAATGTGAGTCATAAGTATTTTGATTCTCCAAATGCTTCTCCCACCCATTTCCCCACCTCTGTCAAAGTTGCTGATTCTGTTCTTCACACTCAATTACAACATCGTCTCGCTGTTGACGACGAAGCAACTTTCCAATAA

Protein sequence

MRGFLSPRRSKPGTITKPEEKGSDEKETHLKTNHRSSSTSSLNPSKSTTKHQPQINNSILSSKSAPESSFTSPASSARTTKSAAQPTTSKKNGKGGTASRAKATVTKDNNVSHKYFDSPNASPTHFPTSVKVADSVLHTQLQHRLAVDDEATFQ

Homology

[Close]

BLAST of HG10021034 vs. NCBI nr
Match: XP_038893971.1 (uncharacterized protein LOC120082755 isoform X2 [Benincasa hispida])

HSP 1 Score: 61.2 bits (147), Expect = 8.8e-06
Identity = 48/88 (54.55%), Postives = 57/88 (64.77%), Query Frame = 0


Query: 2  RGFLSPRRSKPGTITKPEEKGSDEKETHLKTNHRSSSTSSLNPSK--STTKHQPQI---- 61
          RGFLSPRRS+PG     E+ GSDE++   K NHRSS+ SSLNPSK  ST   Q ++    
Sbjct: 4  RGFLSPRRSRPGA---TEQGGSDERKNQYKMNHRSSTISSLNPSKSPSTENLQQEVAASN 63

Query: 62 NNSILSSKSAPESSFTS--PASSARTTK 82
             I SSKSAPES+  S  PA + RTTK
Sbjct: 64 KKGIFSSKSAPESALNSATPAPTRRTTK 88

[Close]

BLAST of HG10021034 vs. NCBI nr
Match: XP_038893970.1 (uncharacterized protein LOC120082755 isoform X1 [Benincasa hispida])

HSP 1 Score: 55.8 bits (133), Expect = 3.7e-04
Identity = 54/120 (45.00%), Postives = 68/120 (56.67%), Query Frame = 0


Query: 2   RGFLSPRRSKPGTITKPEEKGSDEKETHLKTNHRSSSTSSLNPSK--STTKHQPQI---- 61
           RGFLSPRRS+PG     E+ GSDE++   K NHRSS+ SSLNPSK  ST   Q ++    
Sbjct: 4   RGFLSPRRSRPGA---TEQGGSDERKNQYKMNHRSSTISSLNPSKSPSTENLQQEVAASN 63

Query: 62  NNSILSSKSAPESSFTS--PASSARTTKSAAQPTTSKKNGKGGTASRAKATVTKDNNVSH 114
              I SSKSAPES+  S  PA + RTTK           GK    S +  T+ + N+ S+
Sbjct: 64  KKGIFSSKSAPESALNSATPAPTRRTTKKG---KVKDDGGKSIHKSVSSDTIDQYNSQSN 117

The following BLAST results are available for this feature:

BLAST of HG10021034 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038893971.1	8.8e-06	54.55	uncharacterized protein LOC120082755 isoform X2 [Benincasa hispida]	[more]
XP_038893970.1	3.7e-04	45.00	uncharacterized protein LOC120082755 isoform X1 [Benincasa hispida]	[more]

BLAST of HG10021034 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10021034 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10021034 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 102..124
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..95
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..124
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 13..33

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10021034.1	HG10021034.1	mRNA