HG10021031 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10021031
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptionserine/arginine repetitive matrix protein 1-like
LocationChr05: 4758055 .. 4760180 (+)
RNA-Seq ExpressionHG10021031
SyntenyHG10021031
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGTTAATTAGAGGAATTATCAGTCCCCCAAGATCCCGATCTTCTCCAAGAGAAGGCAAACCTCACAATAATGTACCCATCAATCCACCCTCCAAACCCACTTCAAAGAAACCCAACAACAATAGTAAAAATCCCAACCGAAGCCATCGAAAAGAAACCCAACAACCCACTACTGCTATCCGTCCAACCAAAAACAACAACGTTAATAATACATCTTCAAACAATCCTTCACGAACTAACCCATCAACAAAACCCACTTCAAAGCTCGTATCCTCAAATCCTAGCGGCCACAAGAAATTAGATAACAATTCCACTACTAAAATCCACCCCTCAAAACAGACGCGATCGACGCCTTCAAAGAACAGTGTAAAAGCAGGGATTGCCAGTCGTTCTGGTTCAAGATCTGACCTTTCGTCTACTGCCAAACCAACCGCCATTGCTAAGGATAAATATTATTTTGATTCGGCTGGACACTCTGCTACTCTACACGATCTTCATGTTCTTGAAAAGTTGCAACGTTTTTCTATCGACGGTGAGGTTTTTTTTTTTTTATTATTATTATTTTTATGATTTCGTTTTTTTTTTCTGTGAAAATTCTCCATTTTTGAACTTGAAAATCTTGCAAAGGCTTTGTTTGAATTTCTCTGAATGTGTCCCACTACAAAGATTTTCTTTGGGAGAATTATATTCGTGGTCTATGGTTAAATCTCCATCATTTAATTTCATAGAAATAGAAACCATTTAAAATGTGGAAGAAAAATTGAGATCTGAAATGGTGAATAATTTTCATCTAAACTATTTCTGGATAGTTCTGAAATATTTACGAAATGTTTTTAAAAAAATTATGAGTATTCTTGAAACCAAATGGAAAATTTTAATTTTTTTTCATTTGTGGACTTGTAAATTAGCATAATATCAAGTAAGTGATTGTTAGCATTAATTTTTGAAAAAATTACATTATTTAAGCGAAGTAAAAAAAAAAAAAAAAAAAGGAAATGTTTGCTGAGAAGGGATAATTTTTGCGTTCTTATATTTTATTTTATAGTTTTAAAATTTTGAAAATTTAAGGAAACAAATTAGTAAGAAGATATGATTTTTCCTCTGAATGTAAGACCAACTAGGTATGTTTTTTTAATGGTAAAGAAATTCTGTGTGTAGGTAAAGATCTTGCAAGCATTGTCCTTCATGAATCAATGGGGTCAGATACAAAGGAAGAAAGTTCTTCTCCAAGCAATGATTCGAGAATGTTTCAAATTTACAAGGAAATTGCATCTCATCGTCAAGAAAACTCATCCATTGCATCTTACTTCACAAAGCTCGAGGCATTATGGGATGAACTTGCAACAGTCAATACCGATTTGCCTCAATGTTCTTGCGGTGGTGCTACTGAAAAGCTAAGTGAGTATATGGAGAGAGAAAAAGTTATGCAATTTCTTGTGGGACTAAACGATTCTTATTCAAACATTTGTAACCAAATCCTTCTTACCACGCCATTTCCAACGGTAGAGAAAGCCTATTATGCAATTATTCGAGAAGAAAAACGTAGGGAATTGCTTGTTGCATTAGAAACTGTTGCGGAAAAAGTAATCCAAAACAATTGGCTTGATCTTCAGAATCAGAATGCTCATTCCAATAATCGTGATAATAATGATGGTGTTCAAGGATTAGTTGATAGTAATAATCTTGATCAGGAGAAGCAATTTGATCAAAATCAAGTCACAAGGTTCCCCATTGAGCCATTGCTAATAGATCTTGGATCTCCTGTGCGATGCTGACGAATTTCAGGTTATGATTTTTTATTTTCTAAAAGAAATGATGAGATAATTTTGCTTTTACATTCTTATATGCTTCATAATTCCTGTTAGGATGTTTTGAATATGTTATCTGATGCTCTAAAGGATTAAGTGTGAGATATCTCTTTTTGTTTGTGGGAGTAGTTAACACATTATTAGTAAAATCTTTATTGATTATTTCTTAATAATTGCTCATATTTTACGTTTTTTATTTTTCTATTTTTGGGTGTTTCAGGATTAGTTCGAGGACAAAAATTGAACTTGTCCAAACTATTGAGCATCATGGGTGAGAGTCTTCACATTGAAAACACTTGCCTCCACAGCAAGTGA

mRNA sequence

ATGGTGTTAATTAGAGGAATTATCAGTCCCCCAAGATCCCGATCTTCTCCAAGAGAAGGCAAACCTCACAATAATGTACCCATCAATCCACCCTCCAAACCCACTTCAAAGAAACCCAACAACAATAGTAAAAATCCCAACCGAAGCCATCGAAAAGAAACCCAACAACCCACTACTGCTATCCGTCCAACCAAAAACAACAACGTTAATAATACATCTTCAAACAATCCTTCACGAACTAACCCATCAACAAAACCCACTTCAAAGCTCGTATCCTCAAATCCTAGCGGCCACAAGAAATTAGATAACAATTCCACTACTAAAATCCACCCCTCAAAACAGACGCGATCGACGCCTTCAAAGAACAGTGTAAAAGCAGGGATTGCCAGTCGTTCTGGTTCAAGATCTGACCTTTCGTCTACTGCCAAACCAACCGCCATTGCTAAGGATAAATATTATTTTGATTCGGCTGGACACTCTGCTACTCTACACGATCTTCATGTTCTTGAAAAGTTGCAACGTTTTTCTATCGACGGATTAGTTCGAGGACAAAAATTGAACTTGTCCAAACTATTGAGCATCATGGGTGAGAGTCTTCACATTGAAAACACTTGCCTCCACAGCAAGTGA

Coding sequence (CDS)

ATGGTGTTAATTAGAGGAATTATCAGTCCCCCAAGATCCCGATCTTCTCCAAGAGAAGGCAAACCTCACAATAATGTACCCATCAATCCACCCTCCAAACCCACTTCAAAGAAACCCAACAACAATAGTAAAAATCCCAACCGAAGCCATCGAAAAGAAACCCAACAACCCACTACTGCTATCCGTCCAACCAAAAACAACAACGTTAATAATACATCTTCAAACAATCCTTCACGAACTAACCCATCAACAAAACCCACTTCAAAGCTCGTATCCTCAAATCCTAGCGGCCACAAGAAATTAGATAACAATTCCACTACTAAAATCCACCCCTCAAAACAGACGCGATCGACGCCTTCAAAGAACAGTGTAAAAGCAGGGATTGCCAGTCGTTCTGGTTCAAGATCTGACCTTTCGTCTACTGCCAAACCAACCGCCATTGCTAAGGATAAATATTATTTTGATTCGGCTGGACACTCTGCTACTCTACACGATCTTCATGTTCTTGAAAAGTTGCAACGTTTTTCTATCGACGGATTAGTTCGAGGACAAAAATTGAACTTGTCCAAACTATTGAGCATCATGGGTGAGAGTCTTCACATTGAAAACACTTGCCTCCACAGCAAGTGA

Protein sequence

MVLIRGIISPPRSRSSPREGKPHNNVPINPPSKPTSKKPNNNSKNPNRSHRKETQQPTTAIRPTKNNNVNNTSSNNPSRTNPSTKPTSKLVSSNPSGHKKLDNNSTTKIHPSKQTRSTPSKNSVKAGIASRSGSRSDLSSTAKPTAIAKDKYYFDSAGHSATLHDLHVLEKLQRFSIDGLVRGQKLNLSKLLSIMGESLHIENTCLHSK
Homology
BLAST of HG10021031 vs. NCBI nr
Match: XP_038895286.1 (hybrid signal transduction histidine kinase L-like isoform X2 [Benincasa hispida])

HSP 1 Score: 108.6 bits (270), Expect = 6.6e-20
Identity = 106/226 (46.90%), Postives = 127/226 (56.19%), Query Frame = 0

Query: 2   VLIRGIISPPRSRSSPREGKPHNNVPINPPSKPTSKKPNNNSKNPNRSHRKETQQPTTAI 61
           +++RGI+SPPR++ S      +N           + KPN  SKN      +E  +PTT I
Sbjct: 1   MVVRGILSPPRTKFSSSRNNSNN----------AASKPNELSKN-----LREETKPTT-I 60

Query: 62  RPTKNNNVNNTSS-NNPSRTNPSTKPTSKLVS-------SNPSGHKKLDNNSTTKI--HP 121
           RPTKNNN N  SS NN SR NPS K TSKLVS       SNP+G KKLD NSTTKI   P
Sbjct: 61  RPTKNNNGNGRSSNNNTSRINPS-KSTSKLVSSRPKTATSNPNGQKKLDKNSTTKIISKP 120

Query: 122 SK---------QTRSTP-SKNSVKAGIASRSGSRSDLSSTAK----------PTAIAKDK 181
           S          QTR TP SK +VK  IAS SGSRS+LSS  K          P  +  + 
Sbjct: 121 SSPRTPKPVTHQTRPTPNSKRNVKNRIASCSGSRSELSSAGKNKYFHSRNGSPNDLGSNH 180

Query: 182 YYFDSAGHSATLHDLHVLEKLQRFSIDGL-VRGQKLNLSKLLSIMG 197
            Y  SAGH ATLHDLHV ++LQR SIDG  + G  L+ + +   MG
Sbjct: 181 RY--SAGHYATLHDLHVSDQLQRLSIDGKDLAGMVLHPNSIYESMG 207

BLAST of HG10021031 vs. NCBI nr
Match: XP_038895287.1 (hybrid signal transduction histidine kinase L-like isoform X3 [Benincasa hispida])

HSP 1 Score: 108.2 bits (269), Expect = 8.6e-20
Identity = 106/225 (47.11%), Postives = 126/225 (56.00%), Query Frame = 0

Query: 2   VLIRGIISPPRSRSSPREGKPHNNVPINPPSKPTSKKPNNNSKNPNRSHRKETQQPTTAI 61
           +++RGI+SPPR++ S      +N           + KPN  SKN      +E  +PTT I
Sbjct: 1   MVVRGILSPPRTKFSSSRNNSNN----------AASKPNELSKN-----LREETKPTT-I 60

Query: 62  RPTKNNNVNNTSS-NNPSRTNPSTKPTSKLVS-------SNPSGHKKLDNNSTTKI--HP 121
           RPTKNNN N  SS NN SR NPS K TSKLVS       SNP+G KKLD NSTTKI   P
Sbjct: 61  RPTKNNNGNGRSSNNNTSRINPS-KSTSKLVSSRPKTATSNPNGQKKLDKNSTTKIISKP 120

Query: 122 SK---------QTRSTP-SKNSVKAGIASRSGSRSDLSSTAK----------PTAIAKDK 181
           S          QTR TP SK +VK  IAS SGSRS+LSS  K          P  +  + 
Sbjct: 121 SSPRTPKPVTHQTRPTPNSKRNVKNRIASCSGSRSELSSAGKNKYFHSRNGSPNDLGSNH 180

Query: 182 YYFDSAGHSATLHDLHVLEKLQRFSIDGLVRGQKLNLSKLLSIMG 197
            Y  SAGH ATLHDLHV ++LQR SID L  G  L+ + +   MG
Sbjct: 181 RY--SAGHYATLHDLHVSDQLQRLSIDDLA-GMVLHPNSIYESMG 205

BLAST of HG10021031 vs. NCBI nr
Match: XP_038895285.1 (GATA zinc finger domain-containing protein 11-like isoform X1 [Benincasa hispida])

HSP 1 Score: 107.1 bits (266), Expect = 1.9e-19
Identity = 103/215 (47.91%), Postives = 121/215 (56.28%), Query Frame = 0

Query: 2   VLIRGIISPPRSRSSPREGKPHNNVPINPPSKPTSKKPNNNSKNPNRSHRKETQQPTTAI 61
           +++RGI+SPPR++ S      +N           + KPN  SKN      +E  +PTT I
Sbjct: 1   MVVRGILSPPRTKFSSSRNNSNN----------AASKPNELSKN-----LREETKPTT-I 60

Query: 62  RPTKNNNVNNTSS-NNPSRTNPSTKPTSKLVS-------SNPSGHKKLDNNSTTKI--HP 121
           RPTKNNN N  SS NN SR NPS K TSKLVS       SNP+G KKLD NSTTKI   P
Sbjct: 61  RPTKNNNGNGRSSNNNTSRINPS-KSTSKLVSSRPKTATSNPNGQKKLDKNSTTKIISKP 120

Query: 122 SK---------QTRSTP-SKNSVKAGIASRSGSRSDLSSTAK----------PTAIAKDK 181
           S          QTR TP SK +VK  IAS SGSRS+LSS  K          P  +  + 
Sbjct: 121 SSPRTPKPVTHQTRPTPNSKRNVKNRIASCSGSRSELSSAGKNKYFHSRNGSPNDLGSNH 180

Query: 182 YYFDSAGHSATLHDLHVLEKLQRFSIDGLVRGQKL 187
            Y  SAGH ATLHDLHV ++LQR SID    G+ L
Sbjct: 181 RY--SAGHYATLHDLHVSDQLQRLSIDEFCVGKDL 196

BLAST of HG10021031 vs. NCBI nr
Match: XP_022994450.1 (sporozoite surface protein 2-like [Cucurbita maxima])

HSP 1 Score: 74.7 bits (182), Expect = 1.0e-09
Identity = 76/158 (48.10%), Postives = 92/158 (58.23%), Query Frame = 0

Query: 3   LIRGIISPPRSRSSPREGKP-HNNVPINPPSKPTSKKPNNNSK---NPN--RSHRKETQQ 62
           ++RGIISPPRSRSSPRE +P +NN   NPPSKP    P        NPN  R+HRKE  Q
Sbjct: 1   MVRGIISPPRSRSSPRESRPFNNNGATNPPSKPNYMSPRRRPTTPINPNELRTHRKE-PQ 60

Query: 63  PTTAIRPTKNNNVNNTSSNNPSRTNPSTKPTSKLVSSNPS----GHKKLDNNSTTKI--- 122
           PT   RPTK  +     S+NP R +PS +P SKLV S P+      KKLD  + T     
Sbjct: 61  PTVVKRPTKPTD----RSSNPPRIDPS-RPNSKLVPSRPAAPSPNEKKLDTKTKTTTRFS 120

Query: 123 --HPSKQTRSTPSKNSVKAGIASRSGSRSDLSSTAKPT 146
              P+K     PSK++VK   A+ SGSRSD  S AKP+
Sbjct: 121 SPRPTKPITPPPSKSNVKG--ATGSGSRSDF-SRAKPS 149

BLAST of HG10021031 vs. NCBI nr
Match: XP_023542694.1 (uncharacterized protein LOC111802521 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 68.9 bits (167), Expect = 5.8e-08
Identity = 72/160 (45.00%), Postives = 90/160 (56.25%), Query Frame = 0

Query: 3   LIRGIISPPRSRSSPREGKP-HNNVPINPPSKPTSKKPNNN-----SKNPNRSHRKETQQ 62
           ++RGIISPPRSRSSPRE +P +NN   NPPS+P    P        + N  R+HRKE  Q
Sbjct: 1   MVRGIISPPRSRSSPRESRPFNNNGATNPPSRPNYMSPRRRPTTPINANELRTHRKE-PQ 60

Query: 63  PTTAIRPTKNNNVNNTSSNNPSRTNPSTKPTSKLVSSNPS----GHKKLDNNSTTKI--- 122
           PT   RPTK  +     S+NP R +PS +P SKLV S P+      +KLD  +  K    
Sbjct: 61  PTVVKRPTKPTD----RSSNPPRIDPS-RPNSKLVPSRPAAPSPNERKLDTKTAPKTTTR 120

Query: 123 ----HPSKQTRSTPSKNSVKAGIASRSGSRSDLSSTAKPT 146
                P+K     PSK++ K   AS SGSRSD  S AKP+
Sbjct: 121 FSSPRPTKPITPPPSKSNGKG--ASGSGSRSDF-SRAKPS 151

BLAST of HG10021031 vs. ExPASy TrEMBL
Match: A0A6J1K179 (sporozoite surface protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111490168 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 5.1e-10
Identity = 76/158 (48.10%), Postives = 92/158 (58.23%), Query Frame = 0

Query: 3   LIRGIISPPRSRSSPREGKP-HNNVPINPPSKPTSKKPNNNSK---NPN--RSHRKETQQ 62
           ++RGIISPPRSRSSPRE +P +NN   NPPSKP    P        NPN  R+HRKE  Q
Sbjct: 1   MVRGIISPPRSRSSPRESRPFNNNGATNPPSKPNYMSPRRRPTTPINPNELRTHRKE-PQ 60

Query: 63  PTTAIRPTKNNNVNNTSSNNPSRTNPSTKPTSKLVSSNPS----GHKKLDNNSTTKI--- 122
           PT   RPTK  +     S+NP R +PS +P SKLV S P+      KKLD  + T     
Sbjct: 61  PTVVKRPTKPTD----RSSNPPRIDPS-RPNSKLVPSRPAAPSPNEKKLDTKTKTTTRFS 120

Query: 123 --HPSKQTRSTPSKNSVKAGIASRSGSRSDLSSTAKPT 146
              P+K     PSK++VK   A+ SGSRSD  S AKP+
Sbjct: 121 SPRPTKPITPPPSKSNVKG--ATGSGSRSDF-SRAKPS 149

BLAST of HG10021031 vs. ExPASy TrEMBL
Match: A0A6J1GTG4 (serine/arginine repetitive matrix protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111456959 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 4.8e-08
Identity = 72/159 (45.28%), Postives = 88/159 (55.35%), Query Frame = 0

Query: 3   LIRGIISPPRSRSSPREGKP-HNNVPINPPSKPTSKKPNNNSK---NPN--RSHRKETQQ 62
           ++RGIISPPRSRSSPRE +P +NN   NPPS+P    P        NPN  R+HRKE  Q
Sbjct: 1   MVRGIISPPRSRSSPRESRPFNNNGATNPPSRPNYMSPRRRPTTPINPNELRTHRKE-PQ 60

Query: 63  PTTAIRPTKNNNVNNTSSNNPSRTNPSTKPTSKLVSSNPSGHKKLDNNSTTKIHPSKQTR 122
           PT   RPTK  +     S+NP R +PS +P SKL  S P+     +    TK  P   TR
Sbjct: 61  PTVVKRPTKPTD----RSSNPPRIDPS-RPNSKLAPSRPAAPSPNERKLDTKTAPKTTTR 120

Query: 123 ----------STPSKNSVKAGIASRSGSRSDLSSTAKPT 146
                     + PSK++ K   AS SGSRSD  S AKP+
Sbjct: 121 FSSPRPTKPITPPSKSNGKG--ASGSGSRSDF-SRAKPS 150

BLAST of HG10021031 vs. ExPASy TrEMBL
Match: A0A6J1C5Z8 (uncharacterized protein LOC111008588 OS=Momordica charantia OX=3673 GN=LOC111008588 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 7.6e-06
Identity = 76/216 (35.19%), Postives = 99/216 (45.83%), Query Frame = 0

Query: 4   IRGIISPPRSRSSPREGKPHNNVPINPPSKPTSKKPNNNSKNPNRSHRKETQQPT-TAIR 63
           +RG+ISPPRSRSSPR+ +PHNN   NPPS+P    P        + H +  ++P+ TA R
Sbjct: 49  LRGLISPPRSRSSPRDFRPHNNGAPNPPSRPNYMSPRRRPTTAEQQHTQTHRKPSATATR 108

Query: 64  PTKNNNVNNTSSNNPSRTNPSTKPTSKLVSS---NPS---GHKKLDNNSTTKIHPSKQT- 123
            TK          +P R  PS KPT+ +V S   NP+     KKLD  +T KI  +K + 
Sbjct: 109 ATK---------KSPPRIRPSPKPTAPIVPSRRPNPNDLHNQKKLDTKTTPKIGGAKPSS 168

Query: 124 -RSTP----------------SKNSV---KAGIASRSGSRSD-----LSSTAKPTAIAKD 180
            R+ P                SKN+    K  IA  S SRSD      S ++K       
Sbjct: 169 PRTQPQRLRNGVEPPRGPTPISKNTTPKPKPAIAIASASRSDSPAANSSPSSKHLPSPGS 228

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038895286.16.6e-2046.90hybrid signal transduction histidine kinase L-like isoform X2 [Benincasa hispida... [more]
XP_038895287.18.6e-2047.11hybrid signal transduction histidine kinase L-like isoform X3 [Benincasa hispida... [more]
XP_038895285.11.9e-1947.91GATA zinc finger domain-containing protein 11-like isoform X1 [Benincasa hispida... [more]
XP_022994450.11.0e-0948.10sporozoite surface protein 2-like [Cucurbita maxima][more]
XP_023542694.15.8e-0845.00uncharacterized protein LOC111802521 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1K1795.1e-1048.10sporozoite surface protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111490168 PE... [more]
A0A6J1GTG44.8e-0845.28serine/arginine repetitive matrix protein 1-like OS=Cucurbita moschata OX=3662 G... [more]
A0A6J1C5Z87.6e-0635.19uncharacterized protein LOC111008588 OS=Momordica charantia OX=3673 GN=LOC111008... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..142
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 52..142

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10021031.1HG10021031.1mRNA