HG10021013 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10021013
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description50S ribosomal protein L7/L12
LocationChr05: 4512313 .. 4512957 (+)
RNA-Seq ExpressionHG10021013
SyntenyHG10021013
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGCTTAGTTTTCAGAATAAGGCATCTCCTACCCAATGTGTTTGCAAACACCATTCGCTCTCCTGCAGTTTCCCTCAATCCTCAAAAAATAAATGGACTACATAGAAATTATGGTCAACCTGCTGGGATAGAGGAGGAAGAGGAAGAGGTGGAAATTGACCAGAGAAGGCTTCCAGCTGATTACGATCCTGCTAATTTTGATCCAACAGAGCATCGTAGTCCTCCAACTCCTCGCGTTTTTAGGCTTGTAGATGAAATATCTGGACTCACATTAGTTGAAGTTTCTGAATTATCTTCCATTTTGAGGAAAAAATTAGGAATGACAGACATGCCAGTTATTGGAGTTATGAAACCAGGAGCTGCCGGATTGGCTGGAATGGCAATGAAAGCATCATCAGCAACTGCCAAGGATGAGAAGAAGCCAGAAAAGACTGTTTATGAGTTGAAACTAGAGTCTTACGAAGCATCTGCAAAGATTAAAATTATCAAGGAGGTAAGAAGTTTCACTGATTTAGGTCTCAAAGAGGCAAAAGATTTAGTGGAGAAAACCCCATCGGTGTTGAAGAAGGGGCTATCAAAGGAAGAGGGTGAACAAATAATTGAAAAGATGAAGGCACTTGGTGCAAAAGTGATCTTGGAATGA

mRNA sequence

ATGCGCTTAGTTTTCAGAATAAGGCATCTCCTACCCAATGTGTTTGCAAACACCATTCGCTCTCCTGCAGTTTCCCTCAATCCTCAAAAAATAAATGGACTACATAGAAATTATGGTCAACCTGCTGGGATAGAGGAGGAAGAGGAAGAGGTGGAAATTGACCAGAGAAGGCTTCCAGCTGATTACGATCCTGCTAATTTTGATCCAACAGAGCATCGTAGTCCTCCAACTCCTCGCGTTTTTAGGCTTGTAGATGAAATATCTGGACTCACATTAGTTGAAGTTTCTGAATTATCTTCCATTTTGAGGAAAAAATTAGGAATGACAGACATGCCAGTTATTGGAGTTATGAAACCAGGAGCTGCCGGATTGGCTGGAATGGCAATGAAAGCATCATCAGCAACTGCCAAGGATGAGAAGAAGCCAGAAAAGACTGTTTATGAGTTGAAACTAGAGTCTTACGAAGCATCTGCAAAGATTAAAATTATCAAGGAGGTAAGAAGTTTCACTGATTTAGGTCTCAAAGAGGCAAAAGATTTAGTGGAGAAAACCCCATCGGTGTTGAAGAAGGGGCTATCAAAGGAAGAGGGTGAACAAATAATTGAAAAGATGAAGGCACTTGGTGCAAAAGTGATCTTGGAATGA

Coding sequence (CDS)

ATGCGCTTAGTTTTCAGAATAAGGCATCTCCTACCCAATGTGTTTGCAAACACCATTCGCTCTCCTGCAGTTTCCCTCAATCCTCAAAAAATAAATGGACTACATAGAAATTATGGTCAACCTGCTGGGATAGAGGAGGAAGAGGAAGAGGTGGAAATTGACCAGAGAAGGCTTCCAGCTGATTACGATCCTGCTAATTTTGATCCAACAGAGCATCGTAGTCCTCCAACTCCTCGCGTTTTTAGGCTTGTAGATGAAATATCTGGACTCACATTAGTTGAAGTTTCTGAATTATCTTCCATTTTGAGGAAAAAATTAGGAATGACAGACATGCCAGTTATTGGAGTTATGAAACCAGGAGCTGCCGGATTGGCTGGAATGGCAATGAAAGCATCATCAGCAACTGCCAAGGATGAGAAGAAGCCAGAAAAGACTGTTTATGAGTTGAAACTAGAGTCTTACGAAGCATCTGCAAAGATTAAAATTATCAAGGAGGTAAGAAGTTTCACTGATTTAGGTCTCAAAGAGGCAAAAGATTTAGTGGAGAAAACCCCATCGGTGTTGAAGAAGGGGCTATCAAAGGAAGAGGGTGAACAAATAATTGAAAAGATGAAGGCACTTGGTGCAAAAGTGATCTTGGAATGA

Protein sequence

MRLVFRIRHLLPNVFANTIRSPAVSLNPQKINGLHRNYGQPAGIEEEEEEVEIDQRRLPADYDPANFDPTEHRSPPTPRVFRLVDEISGLTLVEVSELSSILRKKLGMTDMPVIGVMKPGAAGLAGMAMKASSATAKDEKKPEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAKDLVEKTPSVLKKGLSKEEGEQIIEKMKALGAKVILE
Homology
[Close]
BLAST of HG10021013 vs. NCBI nr
Match: XP_038876937.1 (50S ribosomal protein L7/L12 [Benincasa hispida])

HSP 1 Score: 367.9 bits (943), Expect = 6.1e-98
Identity = 198/215 (92.09%), Postives = 206/215 (95.81%), Query Frame = 0 

Query: 1   MRLVFRIRHLLPNVFANTIRSPAVSLNPQKINGLHRNYGQPAGIEEEEEEVEIDQRRLPA 60
           M LV RIRHLLPNVFANTIRSPAV+LNP  INGLHRNY QPA IE+EEEE+EIDQRRLPA
Sbjct: 1   MHLVLRIRHLLPNVFANTIRSPAVALNPLNINGLHRNYAQPARIEDEEEELEIDQRRLPA 60

Query: 61  DYDPANFDPTEHRSPPTPRVFRLVDEISGLTLVEVSELSSILRKKLGMTDMPVIGVMKPG 120
           DYDPANFDPT+HRSPPT RVFRLVDEISGLTLVEV+ELSSILRKKLGMTDMPV+GVMKPG
Sbjct: 61  DYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGVMKPG 120

Query: 121 AAGLAGMAMKA-SSATAKDEKKPEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAKD 180
           AAGLAGMAMKA SSATAK+EKK EKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAKD
Sbjct: 121 AAGLAGMAMKASSSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAKD 180

Query: 181 LVEKTPSVLKKGLSKEEGEQIIEKMKALGAKVILE 215
           LVEKTPSVLKKGLSKEEGE+IIEKMKALGAKVILE
Sbjct: 181 LVEKTPSVLKKGLSKEEGEKIIEKMKALGAKVILE 215

[Close]
BLAST of HG10021013 vs. NCBI nr
Match: XP_022137691.1 (uncharacterized protein LOC111009067 [Momordica charantia])

HSP 1 Score: 365.9 bits (938), Expect = 2.3e-97
Identity = 196/214 (91.59%), Postives = 204/214 (95.33%), Query Frame = 0 

Query: 1   MRLVFRIRHLLPNVFANTIRSPAVSLNPQKINGLHRNYGQPAGIEEEEEEVEIDQRRLPA 60
           M LV RIRHLLPNVFANTIRSPAV+LNP   NGLHRNY QPA IEEEE+EVEIDQRRLPA
Sbjct: 1   MHLVLRIRHLLPNVFANTIRSPAVALNPLNSNGLHRNYAQPARIEEEEDEVEIDQRRLPA 60

Query: 61  DYDPANFDPTEHRSPPTPRVFRLVDEISGLTLVEVSELSSILRKKLGMTDMPVIGVMKPG 120
           DYDPANFDPTEHRSPPT RVFRLVDEISGLTLVEV+ELS+ILRKKLGMTDMPV+GVMKPG
Sbjct: 61  DYDPANFDPTEHRSPPTDRVFRLVDEISGLTLVEVAELSTILRKKLGMTDMPVVGVMKPG 120

Query: 121 AAGLAGMAMKASSATAKDEKKPEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAKDL 180
           AAGL GMAMKAS+A AK+EKKPEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAKDL
Sbjct: 121 AAGLGGMAMKASTA-AKEEKKPEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAKDL 180

Query: 181 VEKTPSVLKKGLSKEEGEQIIEKMKALGAKVILE 215
           VEKTPSVLKKGLSKEEGEQ+IEKMKALGAKVILE
Sbjct: 181 VEKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE 213

[Close]
BLAST of HG10021013 vs. NCBI nr
Match: KAG6584188.1 (50S ribosomal protein L7/L12, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019780.1 50S ribosomal protein L7/L12, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 354.0 bits (907), Expect = 9.2e-94
Identity = 190/214 (88.79%), Postives = 201/214 (93.93%), Query Frame = 0 

Query: 1   MRLVFRIRHLLPNVFANTIRSPAVSLNPQKINGLHRNYGQPAGIEEEEEEVEIDQRRLPA 60
           MRLV RI HLLPNV ANT RSPA++LNP  +NGLHRN+ QPA I EEEEEVEIDQRRLPA
Sbjct: 1   MRLVLRISHLLPNVLANTFRSPALALNPLNVNGLHRNFSQPARI-EEEEEVEIDQRRLPA 60

Query: 61  DYDPANFDPTEHRSPPTPRVFRLVDEISGLTLVEVSELSSILRKKLGMTDMPVIGVMKPG 120
           DYDPANFDPT+HRSPPT RVFRLVDEISGLTLVEV+ELSSILRKKLGMTDMPV+GVMK G
Sbjct: 61  DYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGVMKAG 120

Query: 121 AAGLAGMAMKASSATAKDEKKPEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAKDL 180
           AAGLAGMA KASSATAK+EKK EKTV+ELKLESYEA+AKIKIIKEVRSFTDLGLKEAKDL
Sbjct: 121 AAGLAGMATKASSATAKEEKKTEKTVFELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDL 180

Query: 181 VEKTPSVLKKGLSKEEGEQIIEKMKALGAKVILE 215
           VEKTPSVLKKGLSKEEGEQ+IEKMKALGAKVILE
Sbjct: 181 VEKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE 213

[Close]
BLAST of HG10021013 vs. NCBI nr
Match: XP_022954769.1 (uncharacterized protein LOC111456924 [Cucurbita moschata] >XP_022954770.1 uncharacterized protein LOC111456924 [Cucurbita moschata])

HSP 1 Score: 352.1 bits (902), Expect = 3.5e-93
Identity = 187/214 (87.38%), Postives = 197/214 (92.06%), Query Frame = 0 

Query: 1   MRLVFRIRHLLPNVFANTIRSPAVSLNPQKINGLHRNYGQPAGIEEEEEEVEIDQRRLPA 60
           M LV R RHLLP VF N +RSP  + N   +NGLHRNY QPA IEEEEEEVEIDQRRLPA
Sbjct: 1   MHLVLRTRHLLPGVFTNIVRSPVAAFN---LNGLHRNYAQPARIEEEEEEVEIDQRRLPA 60

Query: 61  DYDPANFDPTEHRSPPTPRVFRLVDEISGLTLVEVSELSSILRKKLGMTDMPVIGVMKPG 120
           DYDPANFDPT+HRSPPT RVFRLVDEISGLTLVEV+ELSSILRKKLGMTDMPV+GVMKPG
Sbjct: 61  DYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGVMKPG 120

Query: 121 AAGLAGMAMKASSATAKDEKKPEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAKDL 180
           AAGLAGM MKAS+A AK+EKKPEKTVYELKLESYEA+AKIKIIKEVRSFTDLGLKEAKDL
Sbjct: 121 AAGLAGMGMKASAAAAKEEKKPEKTVYELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDL 180

Query: 181 VEKTPSVLKKGLSKEEGEQIIEKMKALGAKVILE 215
           VEKTPSVLKKGLSKEEGEQ+IEKMKALGAKVILE
Sbjct: 181 VEKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE 211

[Close]
BLAST of HG10021013 vs. NCBI nr
Match: XP_022924112.1 (uncharacterized protein LOC111431646 [Cucurbita moschata])

HSP 1 Score: 350.9 bits (899), Expect = 7.8e-93
Identity = 188/214 (87.85%), Postives = 201/214 (93.93%), Query Frame = 0 

Query: 1   MRLVFRIRHLLPNVFANTIRSPAVSLNPQKINGLHRNYGQPAGIEEEEEEVEIDQRRLPA 60
           MRLV RI HLLPNV ANT RSPA++LNP  +NGLHR++ QPA I EEEEEVEIDQRRLPA
Sbjct: 1   MRLVLRISHLLPNVLANTFRSPALALNPLNVNGLHRDFSQPAWI-EEEEEVEIDQRRLPA 60

Query: 61  DYDPANFDPTEHRSPPTPRVFRLVDEISGLTLVEVSELSSILRKKLGMTDMPVIGVMKPG 120
           DYDPANFDPT+HRSPPT RVFRLVDEISGLTLVEV+ELSSILRK+LGMTDMPV+GVMK G
Sbjct: 61  DYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKRLGMTDMPVVGVMKAG 120

Query: 121 AAGLAGMAMKASSATAKDEKKPEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAKDL 180
           AAGLAGMA KASSATAK+EKK EKTV+ELKLESYEA+AKIKIIKEVRSFTDLGLKEAKDL
Sbjct: 121 AAGLAGMATKASSATAKEEKKTEKTVFELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDL 180

Query: 181 VEKTPSVLKKGLSKEEGEQIIEKMKALGAKVILE 215
           VEKTPSVLKKGLSKEEGEQ+IEKMKALGAKVILE
Sbjct: 181 VEKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE 213

[Close]
BLAST of HG10021013 vs. ExPASy Swiss-Prot
Match: Q9USJ9 (54S ribosomal protein L12, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=mrpl12 PE=3 SV=2)

HSP 1 Score: 95.9 bits (237), Expect = 5.9e-19
Identity = 57/136 (41.91%), Postives = 84/136 (61.76%), Query Frame = 0 

Query: 79  RVFRLVDEISGLTLVEVSELSSILRKKLGMTDMPVIGVMKPGAAGLAGMAMKASSATAKD 138
           ++  +VD+IS L+L+E SEL   L++KL + ++  +  + P  A  A      S   A +
Sbjct: 43  QIGEMVDKISSLSLLETSELVKQLKEKLNIAEIAPMAAVAPAVASAA-----PSEEKAPE 102

Query: 139 EKKPEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAKDLVEKTPSVLKKGLSKEEGE 198
           EKK EKT + LKLES++A +K K+IKEV+S   L L +AK  VE  P VLK+ + KE+ E
Sbjct: 103 EKKEEKTTWNLKLESFDAGSKAKVIKEVKSLLGLSLVDAKKFVESAPKVLKENILKEDAE 162

Query: 199 QIIEKMKALGAKVILE 215
            I  K++ L  KV+LE
Sbjct: 163 AIKSKLEKLSCKVVLE 173

[Close]
BLAST of HG10021013 vs. ExPASy Swiss-Prot
Match: P41189 (50S ribosomal protein L7/L12 OS=Liberibacter africanus OX=34020 GN=rplL PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.2e-16
Identity = 54/131 (41.22%), Postives = 83/131 (63.36%), Query Frame = 0 

Query: 83  LVDEISGLTLVEVSELSSILRKKLGMTDMPVIGVMKPGAAGLAGMAMKASSATAKDEKKP 142
           +V+++S LTL++ +ELS  L ++ G+             +  A +A+ AS+A        
Sbjct: 7   IVEKLSSLTLLQAAELSKRLEEEWGV-------------SAAAPVAVVASAAGESAAAVA 66

Query: 143 EKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAKDLVEKTPSVLKKGLSKEEGEQIIE 202
           EKT +E+ LE ++A  KI +IKEVR+ T+LGLKEAKD VE  P  LK G+SK+E E++ +
Sbjct: 67  EKTEFEVFLEGFDAKKKISVIKEVRAITELGLKEAKDFVESAPKSLKTGVSKDEAEELKK 124

Query: 203 KMKALGAKVIL 214
           K++A GA +IL
Sbjct: 127 KLEAAGATIIL 124

[Close]
BLAST of HG10021013 vs. ExPASy Swiss-Prot
Match: P53163 (54S ribosomal protein L12, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=MNP1 PE=1 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.7e-16
Identity = 60/147 (40.82%), Postives = 93/147 (63.27%), Query Frame = 0 

Query: 75  PPTPRVFRLVDEISGLTLVEVSELSSILRKKLGMTD--MPVIGVMKPGAAGLAGMAMKAS 134
           P  P++ ++V +IS LTL+E S L + L+  L + +  MP+ G M  GAAG     + +S
Sbjct: 49  PVDPKISKIVQDISQLTLLETSSLINELKTVLNIPEISMPMGGFM-AGAAGAGAGNVPSS 108

Query: 135 S----ATAKDEKKPE-KTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAKDLVEKTPSV 194
           +    + A++E KPE KTV+ +KL+S++   K K+IKEV+    L L EAK  VE  P V
Sbjct: 109 TGEAGSGAEEEAKPEAKTVFTVKLDSFDTKTKAKVIKEVKGLLGLSLVEAKKFVEAAPKV 168

Query: 195 LKKGLSKEEGEQIIEKMKALGAKVILE 215
           LK+ ++K++ E+I + ++ LGAKV LE
Sbjct: 169 LKENVAKDDAEKIKKTLEDLGAKVSLE 194

[Close]
BLAST of HG10021013 vs. ExPASy Swiss-Prot
Match: A5ELN8 (50S ribosomal protein L7/L12 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) OX=288000 GN=rplL PE=3 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.0e-15
Identity = 54/133 (40.60%), Postives = 84/133 (63.16%), Query Frame = 0 

Query: 82  RLVDEISGLTLVEVSELSSILRKKLGMTDMPVIGVMKPGAAGLAGMAMKASSATAKDEKK 141
           ++VD++S LT++E +EL+ +L +K G++    + V  PGA G         +A A  E+K
Sbjct: 6   KIVDDLSALTVLEAAELAKLLEEKWGVSAAAAVAVAAPGAGG---------AAAAPAEEK 65

Query: 142 PEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAKDLVEKTPSVLKKGLSKEEGEQII 201
            E TV    + +     KI++IKEVR+ T LGLKEAKDLVE  P  +K+G++K+E E+I 
Sbjct: 66  TEFTV----VLASAGDKKIEVIKEVRAITGLGLKEAKDLVEGAPKPVKEGVNKDEAEKIK 125

Query: 202 EKMKALGAKVILE 215
            +++  GAKV L+
Sbjct: 126 GQLEKAGAKVELK 125

[Close]
BLAST of HG10021013 vs. ExPASy Swiss-Prot
Match: A4YSI0 (50S ribosomal protein L7/L12 OS=Bradyrhizobium sp. (strain ORS 278) OX=114615 GN=rplL PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.4e-15
Identity = 54/133 (40.60%), Postives = 83/133 (62.41%), Query Frame = 0 

Query: 82  RLVDEISGLTLVEVSELSSILRKKLGMTDMPVIGVMKPGAAGLAGMAMKASSATAKDEKK 141
           ++VD++S LT++E +EL+ +L +K G++    + V  PG  G         +A A  E+K
Sbjct: 6   KIVDDLSSLTVLEAAELAKLLEEKWGVSAAAAVAVAAPGGGG---------AAAAPAEEK 65

Query: 142 PEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAKDLVEKTPSVLKKGLSKEEGEQII 201
            E TV    + +     KI++IKEVR+ T LGLKEAKDLVE  P  +K+G++KEE E+I 
Sbjct: 66  TEFTV----VLASAGDKKIEVIKEVRAITGLGLKEAKDLVEGAPKPVKEGVNKEEAEKIK 125

Query: 202 EKMKALGAKVILE 215
            +++  GAKV L+
Sbjct: 126 GQLEKAGAKVELK 125

[Close]
BLAST of HG10021013 vs. ExPASy TrEMBL
Match: A0A6J1C7E3 (uncharacterized protein LOC111009067 OS=Momordica charantia OX=3673 GN=LOC111009067 PE=3 SV=1)

HSP 1 Score: 365.9 bits (938), Expect = 1.1e-97
Identity = 196/214 (91.59%), Postives = 204/214 (95.33%), Query Frame = 0 

Query: 1   MRLVFRIRHLLPNVFANTIRSPAVSLNPQKINGLHRNYGQPAGIEEEEEEVEIDQRRLPA 60
           M LV RIRHLLPNVFANTIRSPAV+LNP   NGLHRNY QPA IEEEE+EVEIDQRRLPA
Sbjct: 1   MHLVLRIRHLLPNVFANTIRSPAVALNPLNSNGLHRNYAQPARIEEEEDEVEIDQRRLPA 60

Query: 61  DYDPANFDPTEHRSPPTPRVFRLVDEISGLTLVEVSELSSILRKKLGMTDMPVIGVMKPG 120
           DYDPANFDPTEHRSPPT RVFRLVDEISGLTLVEV+ELS+ILRKKLGMTDMPV+GVMKPG
Sbjct: 61  DYDPANFDPTEHRSPPTDRVFRLVDEISGLTLVEVAELSTILRKKLGMTDMPVVGVMKPG 120

Query: 121 AAGLAGMAMKASSATAKDEKKPEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAKDL 180
           AAGL GMAMKAS+A AK+EKKPEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAKDL
Sbjct: 121 AAGLGGMAMKASTA-AKEEKKPEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAKDL 180

Query: 181 VEKTPSVLKKGLSKEEGEQIIEKMKALGAKVILE 215
           VEKTPSVLKKGLSKEEGEQ+IEKMKALGAKVILE
Sbjct: 181 VEKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE 213

[Close]
BLAST of HG10021013 vs. ExPASy TrEMBL
Match: A0A6J1GU05 (uncharacterized protein LOC111456924 OS=Cucurbita moschata OX=3662 GN=LOC111456924 PE=3 SV=1)

HSP 1 Score: 352.1 bits (902), Expect = 1.7e-93
Identity = 187/214 (87.38%), Postives = 197/214 (92.06%), Query Frame = 0 

Query: 1   MRLVFRIRHLLPNVFANTIRSPAVSLNPQKINGLHRNYGQPAGIEEEEEEVEIDQRRLPA 60
           M LV R RHLLP VF N +RSP  + N   +NGLHRNY QPA IEEEEEEVEIDQRRLPA
Sbjct: 1   MHLVLRTRHLLPGVFTNIVRSPVAAFN---LNGLHRNYAQPARIEEEEEEVEIDQRRLPA 60

Query: 61  DYDPANFDPTEHRSPPTPRVFRLVDEISGLTLVEVSELSSILRKKLGMTDMPVIGVMKPG 120
           DYDPANFDPT+HRSPPT RVFRLVDEISGLTLVEV+ELSSILRKKLGMTDMPV+GVMKPG
Sbjct: 61  DYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGVMKPG 120

Query: 121 AAGLAGMAMKASSATAKDEKKPEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAKDL 180
           AAGLAGM MKAS+A AK+EKKPEKTVYELKLESYEA+AKIKIIKEVRSFTDLGLKEAKDL
Sbjct: 121 AAGLAGMGMKASAAAAKEEKKPEKTVYELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDL 180

Query: 181 VEKTPSVLKKGLSKEEGEQIIEKMKALGAKVILE 215
           VEKTPSVLKKGLSKEEGEQ+IEKMKALGAKVILE
Sbjct: 181 VEKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE 211

[Close]
BLAST of HG10021013 vs. ExPASy TrEMBL
Match: A0A6J1E822 (uncharacterized protein LOC111431646 OS=Cucurbita moschata OX=3662 GN=LOC111431646 PE=3 SV=1)

HSP 1 Score: 350.9 bits (899), Expect = 3.8e-93
Identity = 188/214 (87.85%), Postives = 201/214 (93.93%), Query Frame = 0 

Query: 1   MRLVFRIRHLLPNVFANTIRSPAVSLNPQKINGLHRNYGQPAGIEEEEEEVEIDQRRLPA 60
           MRLV RI HLLPNV ANT RSPA++LNP  +NGLHR++ QPA I EEEEEVEIDQRRLPA
Sbjct: 1   MRLVLRISHLLPNVLANTFRSPALALNPLNVNGLHRDFSQPAWI-EEEEEVEIDQRRLPA 60

Query: 61  DYDPANFDPTEHRSPPTPRVFRLVDEISGLTLVEVSELSSILRKKLGMTDMPVIGVMKPG 120
           DYDPANFDPT+HRSPPT RVFRLVDEISGLTLVEV+ELSSILRK+LGMTDMPV+GVMK G
Sbjct: 61  DYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKRLGMTDMPVVGVMKAG 120

Query: 121 AAGLAGMAMKASSATAKDEKKPEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAKDL 180
           AAGLAGMA KASSATAK+EKK EKTV+ELKLESYEA+AKIKIIKEVRSFTDLGLKEAKDL
Sbjct: 121 AAGLAGMATKASSATAKEEKKTEKTVFELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDL 180

Query: 181 VEKTPSVLKKGLSKEEGEQIIEKMKALGAKVILE 215
           VEKTPSVLKKGLSKEEGEQ+IEKMKALGAKVILE
Sbjct: 181 VEKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE 213

[Close]
BLAST of HG10021013 vs. ExPASy TrEMBL
Match: A0A6J1JZ85 (uncharacterized protein LOC111490181 OS=Cucurbita maxima OX=3661 GN=LOC111490181 PE=3 SV=1)

HSP 1 Score: 349.4 bits (895), Expect = 1.1e-92
Identity = 186/214 (86.92%), Postives = 196/214 (91.59%), Query Frame = 0 

Query: 1   MRLVFRIRHLLPNVFANTIRSPAVSLNPQKINGLHRNYGQPAGIEEEEEEVEIDQRRLPA 60
           M LV R RHLLP VF N +RSP  + N   +NGLHRNY QPA IEEEEEEVEIDQRRLPA
Sbjct: 1   MHLVLRTRHLLPGVFTNIVRSPVAAFN---LNGLHRNYAQPAWIEEEEEEVEIDQRRLPA 60

Query: 61  DYDPANFDPTEHRSPPTPRVFRLVDEISGLTLVEVSELSSILRKKLGMTDMPVIGVMKPG 120
           DYDPANFDPT+HRSPPT RVFRLVDEISGLTLVEV+ELSSILRKKLGMTDMPV+GVMKPG
Sbjct: 61  DYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGVMKPG 120

Query: 121 AAGLAGMAMKASSATAKDEKKPEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAKDL 180
           AAGLAGM MKAS+A AK+ KKPEKTVYELKLESYEA+AKIKIIKEVRSFTDLGLKEAKDL
Sbjct: 121 AAGLAGMGMKASAAAAKEVKKPEKTVYELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDL 180

Query: 181 VEKTPSVLKKGLSKEEGEQIIEKMKALGAKVILE 215
           VEKTPSVLKKGLSKEEGEQ+IEKMKALGAKVILE
Sbjct: 181 VEKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE 211

[Close]
BLAST of HG10021013 vs. ExPASy TrEMBL
Match: A0A6J1KHE7 (uncharacterized protein LOC111495277 OS=Cucurbita maxima OX=3661 GN=LOC111495277 PE=3 SV=1)

HSP 1 Score: 347.1 bits (889), Expect = 5.4e-92
Identity = 187/214 (87.38%), Postives = 199/214 (92.99%), Query Frame = 0 

Query: 1   MRLVFRIRHLLPNVFANTIRSPAVSLNPQKINGLHRNYGQPAGIEEEEEEVEIDQRRLPA 60
           MRLV RI HLLPNV ANT RSPA++LNP  +NGLHRN+ QPA I  EEEEVEIDQRRLPA
Sbjct: 1   MRLVLRISHLLPNVLANTFRSPALALNPLNVNGLHRNFAQPARI--EEEEVEIDQRRLPA 60

Query: 61  DYDPANFDPTEHRSPPTPRVFRLVDEISGLTLVEVSELSSILRKKLGMTDMPVIGVMKPG 120
           DYD ANFDPT+HRSPPT RVFRLVDEISGLTLVEV+ELSSILRKKLG+TDMPV+GVMK G
Sbjct: 61  DYDLANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKKLGLTDMPVVGVMKAG 120

Query: 121 AAGLAGMAMKASSATAKDEKKPEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAKDL 180
           AAGLAGMA KASSATAK+EKK EKTV+ELKLESYEA+AKIKIIKEVRSFTDLGLKEAKDL
Sbjct: 121 AAGLAGMATKASSATAKEEKKTEKTVFELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDL 180

Query: 181 VEKTPSVLKKGLSKEEGEQIIEKMKALGAKVILE 215
           VEKTPSVLKKGLSKEEGEQ+IEKMKALGAKVILE
Sbjct: 181 VEKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE 212

[Close]
BLAST of HG10021013 vs. TAIR 10
Match: AT1G70190.1 (Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like )

HSP 1 Score: 239.6 bits (610), Expect = 2.3e-63
Identity = 130/185 (70.27%), Postives = 153/185 (82.70%), Query Frame = 0 

Query: 33  GLHRNYGQPAGIEEEEEEVEIDQRRLPADYDPANFDPTEHRSPPTPRVFRLVDEISGLTL 92
           G +R+Y QPA IE+EEEE E DQR+LP DYDPA FDPTEHRSPPT RVFRLVDEIS LTL
Sbjct: 25  GGYRSYTQPAKIEDEEEE-EFDQRKLPTDYDPATFDPTEHRSPPTDRVFRLVDEISSLTL 84

Query: 93  VEVSELSSILRKKLGMTDMPVIGVMKPGA---AGLAGMAMKASSATAKDEKKPEKTVYEL 152
           +E+SEL SI+ KK GMT++P + VMKPGA    G+ G     S +   +E K EKTV+E+
Sbjct: 85  LEISELGSIIMKKKGMTELPTVAVMKPGAGGGVGVGGGGGMVSQSGVSEEAKVEKTVFEI 144

Query: 153 KLESYEASAKIKIIKEVRSFTDLGLKEAKDLVEKTPSVLKKGLSKEEGEQIIEKMKALGA 212
           KLES+EASAKIKIIKE+RSFTDLGLKEAK LVEKTP++LK GLSKEEGE+I+EK+KALGA
Sbjct: 145 KLESFEASAKIKIIKELRSFTDLGLKEAKALVEKTPAILKAGLSKEEGEKILEKLKALGA 204

Query: 213 KVILE 215
           KV+LE
Sbjct: 205 KVVLE 208

[Close]
BLAST of HG10021013 vs. TAIR 10
Match: AT1G70190.2 (Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like )

HSP 1 Score: 239.6 bits (610), Expect = 2.3e-63
Identity = 130/185 (70.27%), Postives = 153/185 (82.70%), Query Frame = 0 

Query: 33  GLHRNYGQPAGIEEEEEEVEIDQRRLPADYDPANFDPTEHRSPPTPRVFRLVDEISGLTL 92
           G +R+Y QPA IE+EEEE E DQR+LP DYDPA FDPTEHRSPPT RVFRLVDEIS LTL
Sbjct: 25  GGYRSYTQPAKIEDEEEE-EFDQRKLPTDYDPATFDPTEHRSPPTDRVFRLVDEISSLTL 84

Query: 93  VEVSELSSILRKKLGMTDMPVIGVMKPGA---AGLAGMAMKASSATAKDEKKPEKTVYEL 152
           +E+SEL SI+ KK GMT++P + VMKPGA    G+ G     S +   +E K EKTV+E+
Sbjct: 85  LEISELGSIIMKKKGMTELPTVAVMKPGAGGGVGVGGGGGMVSQSGVSEEAKVEKTVFEI 144

Query: 153 KLESYEASAKIKIIKEVRSFTDLGLKEAKDLVEKTPSVLKKGLSKEEGEQIIEKMKALGA 212
           KLES+EASAKIKIIKE+RSFTDLGLKEAK LVEKTP++LK GLSKEEGE+I+EK+KALGA
Sbjct: 145 KLESFEASAKIKIIKELRSFTDLGLKEAKALVEKTPAILKAGLSKEEGEKILEKLKALGA 204

Query: 213 KVILE 215
           KV+LE
Sbjct: 205 KVVLE 208

[Close]
BLAST of HG10021013 vs. TAIR 10
Match: AT4G36420.1 (Ribosomal protein L12 family protein )

HSP 1 Score: 136.3 bits (342), Expect = 2.8e-32
Identity = 74/145 (51.03%), Postives = 109/145 (75.17%), Query Frame = 0 

Query: 72  HRSPPT--PRVFRLVDEISGLTLVEVSELSSILRKKLGMTDMPVIGVMKPGAAGLAGMAM 131
           + SP T    V ++V+E+S LTL+E  +L+ ILR+KL ++++PV+  M PG +     A 
Sbjct: 35  YSSPATQSENVSKIVNELSNLTLLETMDLTEILRQKLNISELPVMAAMMPGMSLPGSGAS 94

Query: 132 KASSATAKDEKKPEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAKDLVEKTPSVLK 191
           K++    K++KK  KT +++ L++Y+A +KIK+IKEVR+ T LGLKEAKDLVEK P++LK
Sbjct: 95  KSAGGEGKEKKKEAKTAFDVMLQAYDAVSKIKVIKEVRTITALGLKEAKDLVEKAPTLLK 154

Query: 192 KGLSKEEGEQIIEKMKALGAKVILE 215
           KG+SKEE E+IIEK+KA+GAKV +E
Sbjct: 155 KGVSKEEAEKIIEKLKAVGAKVAME 179

[Close]
BLAST of HG10021013 vs. TAIR 10
Match: AT3G06040.1 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein )

HSP 1 Score: 104.0 bits (258), Expect = 1.5e-22
Identity = 59/151 (39.07%), Postives = 92/151 (60.93%), Query Frame = 0 

Query: 64  PANFDPTEHRSPPTPRVFRLVDEISGLTLVEVSELSSILRKKLGMTDMPVIGVMKPGAAG 123
           P+ +DP   R  P+ ++  L + I+ L+  E  ++   L + L +    +I         
Sbjct: 44  PSVYDPYGPRPQPSSKIMELAERIAALSPEERKQIGPALNEHLRLPKQQMI--------S 103

Query: 124 LAGMAMKASSATAKDEKKPEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAKDLVEK 183
             G+  K  +     E+K EKT +++KLE + AS KIK+IKEVR+FT LGLKEAK+LVEK
Sbjct: 104 SDGIGAKQDTGAGNVEEKKEKTAFDVKLEKFNASDKIKVIKEVRTFTSLGLKEAKELVEK 163

Query: 184 TPSVLKKGLSKEEGEQIIEKMKALGAKVILE 215
            P++LK+G++KEE  +II K+KA+G   ++E
Sbjct: 164 VPAILKQGVTKEEANEIIAKIKAVGGIAVME 186

[Close]
BLAST of HG10021013 vs. TAIR 10
Match: AT3G06040.2 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein )

HSP 1 Score: 104.0 bits (258), Expect = 1.5e-22
Identity = 59/151 (39.07%), Postives = 92/151 (60.93%), Query Frame = 0 

Query: 64  PANFDPTEHRSPPTPRVFRLVDEISGLTLVEVSELSSILRKKLGMTDMPVIGVMKPGAAG 123
           P+ +DP   R  P+ ++  L + I+ L+  E  ++   L + L +    +I         
Sbjct: 44  PSVYDPYGPRPQPSSKIMELAERIAALSPEERKQIGPALNEHLRLPKQQMI--------S 103

Query: 124 LAGMAMKASSATAKDEKKPEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAKDLVEK 183
             G+  K  +     E+K EKT +++KLE + AS KIK+IKEVR+FT LGLKEAK+LVEK
Sbjct: 104 SDGIGAKQDTGAGNVEEKKEKTAFDVKLEKFNASDKIKVIKEVRTFTSLGLKEAKELVEK 163

Query: 184 TPSVLKKGLSKEEGEQIIEKMKALGAKVILE 215
            P++LK+G++KEE  +II K+KA+G   ++E
Sbjct: 164 VPAILKQGVTKEEANEIIAKIKAVGGIAVME 186

The following BLAST results are available for this feature:
BLAST of HG10021013 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038876937.16.1e-9892.0950S ribosomal protein L7/L12 [Benincasa hispida][more]
XP_022137691.12.3e-9791.59uncharacterized protein LOC111009067 [Momordica charantia][more]
KAG6584188.19.2e-9488.7950S ribosomal protein L7/L12, partial [Cucurbita argyrosperma subsp. sororia] >K... [more]
XP_022954769.13.5e-9387.38uncharacterized protein LOC111456924 [Cucurbita moschata] >XP_022954770.1 unchar... [more]
XP_022924112.17.8e-9387.85uncharacterized protein LOC111431646 [Cucurbita moschata][more]
BLAST of HG10021013 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9USJ95.9e-1941.9154S ribosomal protein L12, mitochondrial OS=Schizosaccharomyces pombe (strain 97... [more]
P411891.2e-1641.2250S ribosomal protein L7/L12 OS=Liberibacter africanus OX=34020 GN=rplL PE=3 SV=... [more]
P531632.7e-1640.8254S ribosomal protein L12, mitochondrial OS=Saccharomyces cerevisiae (strain ATC... [more]
A5ELN81.0e-1540.6050S ribosomal protein L7/L12 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182... [more]
A4YSI01.4e-1540.6050S ribosomal protein L7/L12 OS=Bradyrhizobium sp. (strain ORS 278) OX=114615 GN... [more]
BLAST of HG10021013 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1C7E31.1e-9791.59uncharacterized protein LOC111009067 OS=Momordica charantia OX=3673 GN=LOC111009... [more]
A0A6J1GU051.7e-9387.38uncharacterized protein LOC111456924 OS=Cucurbita moschata OX=3662 GN=LOC1114569... [more]
A0A6J1E8223.8e-9387.85uncharacterized protein LOC111431646 OS=Cucurbita moschata OX=3662 GN=LOC1114316... [more]
A0A6J1JZ851.1e-9286.92uncharacterized protein LOC111490181 OS=Cucurbita maxima OX=3661 GN=LOC111490181... [more]
A0A6J1KHE75.4e-9287.38uncharacterized protein LOC111495277 OS=Cucurbita maxima OX=3661 GN=LOC111495277... [more]
BLAST of HG10021013 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G70190.12.3e-6370.27Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/a... [more]
AT1G70190.22.3e-6370.27Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/a... [more]
AT4G36420.12.8e-3251.03Ribosomal protein L12 family protein [more]
AT3G06040.11.5e-2239.07Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr... [more]
AT3G06040.21.5e-2239.07Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr... [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014719Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-likeGENE3D3.30.1390.10coord: 144..213
e-value: 3.0E-21
score: 77.3
IPR014719Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-likeSUPERFAMILY54736ClpS-likecoord: 147..213
IPR013823Ribosomal protein L7/L12, C-terminalPFAMPF00542Ribosomal_L12coord: 148..213
e-value: 1.2E-20
score: 73.6
IPR008932Ribosomal protein L7/L12, oligomerisationPFAMPF16320Ribosomal_L12_Ncoord: 83..123
e-value: 2.3E-9
score: 36.8
IPR036235Ribosomal protein L7/L12, oligomerisation domain superfamilyGENE3D1.20.5.710Single helix bincoord: 81..143
e-value: 2.7E-6
score: 29.3
IPR036235Ribosomal protein L7/L12, oligomerisation domain superfamilySUPERFAMILY48300Ribosomal protein L7/12, oligomerisation (N-terminal) domaincoord: 82..123
IPR000206Ribosomal protein L7/L12PANTHERPTHR4598739S RIBOSOMAL PROTEIN L12coord: 28..214
IPR000206Ribosomal protein L7/L12HAMAPMF_00368Ribosomal_L7_L12coord: 77..214
score: 17.166691
IPR000206Ribosomal protein L7/L12CDDcd00387Ribosomal_L7_L12coord: 78..213
e-value: 3.45093E-46
score: 147.302
IPR015608Putative ribosomal protein L7/L12, plantsPANTHERPTHR45987:SF1F20P5.9 PROTEINcoord: 28..214

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10021013.1HG10021013.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome