HG10020953 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10020953
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Unknown protein
Location	Chr05: 3925817 .. 3929250 (+)
RNA-Seq Expression	HG10020953
Synteny	HG10020953

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTGCTAAAATACTAGCCTATCTATATTACTTGAATCTCATGGAAAAGGAACTCGTATGCTTATCAAGAGCATCTAGAAGAAAAATACTCGATTGGTGTAAAACCTTTGAGCATCTATATTCTCAAGTCAAATCGGTTAACATTGAACTTAAATTCAGCCCTGCTTTAGCCGTGCCCCAGTCCAAATGCCTTTTCAAGGTCCTCATAGACGAAGACAAGTGCTCAAAGATGAATATGAATATTGTGGCAACTTATATACAAGCACCAGAAATGTTAATATTCACTTCAAGTCCTCGATAAACCTATCAAAATTTTAGCACGTTCCAGACAGTTACTCGAGAACAATGTCATTACTTCAGCCATGGATTTTTGTTTCATAAAAAATATGTGACCGTAAGTTCAGCACGTTTTAAATTGAACCTGGGTTTTTCAGCTTCTTCAACTGGAAATTCTAAGTTCCACGAAGTTCCTCTGATGAGACGTCGAAAACAGACACATTACAAACAGTTAAGTGTTGAGATAACTAAATTTAAAATAACACATCAACTTATTGGGTCAGTCCAAGATTTAACACGGTATCAAAATAGAAAGTCATGTGTTCAAACTCATGTAATGTCATTTTCTCCCCAATTAATATTGATTTACACTTGTCAGGTCTTTTATAAATCTTCAAGCCCACAAATGTGGGAGAGTGTTAAAGTGTGATATCAAACTAGTTGTGGGGTAAGCAGCCTCACATCAAACAGAGCATGATTTTAGCCATATCAAAGATCAGTGGAACCAAGAAGAATTTTTTTTTAAATGAATTCGGGAATCTCATGGTATAAGTGATAATTCCAAATTGCAATTAAAGTTTTCTTGTAAAAATAAACAATATTAGAAGATAAGTATTTAAAATACTAAACGGAATTTCGATATCTTTTAGGCTCTTGTCAACTATATCCCAATCCGAGCCCCAAAAGGATCCATAGTAACATGATGATCAAAACGAAGCACTGTCTCATCATTACCAGTCAAAGTACATCTAAAATCCGAAATGAAATGTAGAATGATTTCGTGACTATATATGAAAAAAAAAAACTCAAGAACAATTTTAGAAACACACAAATACATTATCGAACTTAAATAATCGCAGATGCGTGTTTATACATGGATGAAAGAAGCGCATTACCTTCAGAGACTCAAAAGAATGGAAAACAGAAACCTAGCAGTAAGCTTCAAAACCTTCCCGAAACGGTTCAAATCGGACATGGATTGTCGTAGAACCTCAATGTTTTGCTGAAATTCTTTGACGCCATTGTCTTGAACCAGAGGTAACCCAAAGGGAATTCGAAAAGAAGATACAATGCATCCATGACGGCGAAGTCGGAATCGAAAACGGTTCTTAGTTCGCCGGCGGCTTTGGTGGGTTGTAGTTTATACGGTTTATTGTTGGCGCCAACATTTTTACGGAATTTAGGTCTGGAGTTTTATATATAGAAAATTATTAAAAACAATATTATACTATTTACAAATTCATGCACTAAACAACCAATACAATTATCTTCAGCCAATCACCGACCGAGGAATAAAGTTCATTACATATCAACAAGTCATTTAAGTCATTTAGGGAAATCAAAGAACCAACAATAATTTTGGTAGAAAATTTAAATCTCTAATCTCATAGTTAAAAGAATATATAAGTGACCAATGCTCATAAATCATGTTAATTGTTGACTCTTTATATCAAAATATTACTCGAGCTAATTGAAAATAAAATTTTTATCAAAATTGACCCACCAAAGATGTTCGGATCACATTTTTTAAGGAGTGAAATTATCTTTTTATCCCTGTGTTACAAAAATATCAAATGTCCATGAAATTTCTCTCCTCTCAATCTCTATCTTTTTTGTTGTTCTTTCTCTTATCTCTCATTCAAACCTTTTTCTCAATTTGGATCCAAACACATTATTGAAGGAAGAAAAAATGGATAAATAAAATTATATTGTTTTTGTTCATTCTCGTAAATCAACTACAATATTCTCCTTTCTCATCCCATCATGACTTGAGCCTCGATGACCAATTTTATTCAACTTCACCGCCGTTCATCTACATTCAATTTACAATCATTTTAACTTCAATCCTTTCGACTTTTAGGGGTATTAAAAGTCAAGATCTTTTAACTTTTTGCTCATTTTAAAAGCATAATTGAAAATAACATAAAAAAAGTATGAAAATGACAAATCATTTAACTAAAACTAAGTTATATTAAGAGAGGCATGATCAAAATAAAATGACATCTCTCTAATTTACATGAATCTTTTCATATAAAGAGGTCTTGTGTACGTGTGAAATTTATTTATTAAAGATTTTCAAACGAAAATCTAATAGAGAGTATAAATTGGTTCACTCATAAAAGTTAAAAATTTGAATTAATACAATTATACTATTGTGGATATTTAATACAACCAAAACTAAAATCCATGAAACAGGCGTGATTTTTTTTTAAATGCCTCTAAATGATCTAAATTAGATAATAGGTGTAGAAATGAAAAAGGAAAAATAAAAGAATCATACCTTTATTATTATTATTATTATTATTATTATTATTATTATTATTAGAAAAAAAAAGAATGTTTTCTTTAGAAATATAATAACTCCAACTCACTAAATTATTCATCATTATTTGACAATGGAATAAAAGCAATAAAGTTAAAAAGCAAACTATTGTCACACAAAAACATTGTTGACAATTGAGATAAAGTTGTGTATTGTCATTGGATAAACTTTTTAATGCAATTTATTACAACCACACAATTTGAAGGGCCTTCTTTTTACATATTTTTTAGAGATTGGACTTGAATTTGCCCTTTGAACTAACAAATGTCTTCAAGAATGTTTAACGCTATTGATTGAAATAACATGATTACAATAAATTCCTAAGCCTACATTTCAAACTCAAATAGGCGCGTTTAGAATGCATTTTCAAGTAATTAAAATAAAAAATAAGTCATTTAAAAAAAAATCAAGTATTTAACAACCTTTCAAAATAAATTTTAGAAAAATGAATTTATGAAATAAATTATTTTATGATAAACATTTGAAAACAACTTTTAGACATATGAATTTTGAGTGTTTAATGGTTAATCTCAAGTCACCACCCCTACCAACTGCCACTGGCCATCTCCGGCCACCACTTCCGGCGACGACCATCGACCATCCTCCGACGACCACCCACTAGCCAACCTCCACCAGTCACCATCTCCGTGCGACCATTTTCCGGAGACCAACCACTAGCCAACCTCCAGCAGCCTTTTTCTGGCGACTGTCGCCAGCTAACCTCCAGCCACCATCTCCGGAGATCGCCACCGACAAACCACCACGATCAACCTTCAACCACTACTTCGTCGGCCACCTCTGACCACCATCCCGACGATCATCAACTAACTTAG

mRNA sequence

ATGACTGCTAAAATACTAGCCTATCTATATTACTTGAATCTCATGGAAAAGGAACTCGTATGCTTATCAAGAGCATCTAGAAGAAAAATACTCGATTGGTGTAAAACCTTTGAGCATCTATATTCTCAAGTCAAATCGGTTAACATTGAACTTAAATTCAGCCCTGCTTTAGCCGTGCCCCAGTCCAAATGCCTTTTCAAGGTCCTCATAGACGAAGACAAGTGCTCAAAGATGAATATGAATATTGTGGCAACTTATATACAAGCACCAGAAATTCACCACCCCTACCAACTGCCACTGGCCATCTCCGGCCACCACTTCCGGCGACGACCATCGACCATCCTCCGACGACCACCCACTAGCCAACCTCCACCAGTCACCATCTCCGTGCGACCATTTTCCGGAGACCAACCACTAGCCAACCTCCAGCAGCCTTTTTCTGGCGACTGTCGCCAGCTAACCTCCAGCCACCATCTCCGGAGATCGCCACCGACAAACCACCACGATCAACCTTCAACCACTACTTCGTCGGCCACCTCTGACCACCATCCCGACGATCATCAACTAACTTAG

Coding sequence (CDS)

ATGACTGCTAAAATACTAGCCTATCTATATTACTTGAATCTCATGGAAAAGGAACTCGTATGCTTATCAAGAGCATCTAGAAGAAAAATACTCGATTGGTGTAAAACCTTTGAGCATCTATATTCTCAAGTCAAATCGGTTAACATTGAACTTAAATTCAGCCCTGCTTTAGCCGTGCCCCAGTCCAAATGCCTTTTCAAGGTCCTCATAGACGAAGACAAGTGCTCAAAGATGAATATGAATATTGTGGCAACTTATATACAAGCACCAGAAATTCACCACCCCTACCAACTGCCACTGGCCATCTCCGGCCACCACTTCCGGCGACGACCATCGACCATCCTCCGACGACCACCCACTAGCCAACCTCCACCAGTCACCATCTCCGTGCGACCATTTTCCGGAGACCAACCACTAGCCAACCTCCAGCAGCCTTTTTCTGGCGACTGTCGCCAGCTAACCTCCAGCCACCATCTCCGGAGATCGCCACCGACAAACCACCACGATCAACCTTCAACCACTACTTCGTCGGCCACCTCTGACCACCATCCCGACGATCATCAACTAACTTAG

Protein sequence

MTAKILAYLYYLNLMEKELVCLSRASRRKILDWCKTFEHLYSQVKSVNIELKFSPALAVPQSKCLFKVLIDEDKCSKMNMNIVATYIQAPEIHHPYQLPLAISGHHFRRRPSTILRRPPTSQPPPVTISVRPFSGDQPLANLQQPFSGDCRQLTSSHHLRRSPPTNHHDQPSTTTSSATSDHHPDDHQLT

Homology

The following BLAST results are available for this feature:

BLAST of HG10020953 vs.


Match Name	E-value	Identity	Description

BLAST of HG10020953 vs.


Match Name	E-value	Identity	Description

BLAST of HG10020953 vs.


Match Name	E-value	Identity	Description

BLAST of HG10020953 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 134..179
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 113..190

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10020953.1	HG10020953.1	mRNA