HG10020801 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10020801
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptionprotein PXR1
LocationChr05: 2552827 .. 2554384 (+)
RNA-Seq ExpressionHG10020801
SyntenyHG10020801
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTTTAAGAAATCAGGGCCACCAGAAATTAGATTACCAAGTCGTGTGGCTGAATTCTCGGCAACCCACAGCAATTTCTGGCCATTGGGTTGCCATATTTATGGAGGTGAGGCGCAGATCCAATAATTGCACAACATTATTCATTCACTTTGCCTTCAATTCTGTCGTGATAGAGTAACTATCGGTACGGACCTCACTGCAATTTCAGGTTCTCTTTCTTTCCCTTCAATATTTTAATAGTTGAATTGGCCATTTTCTGGATCTGATTTACTTGATCTCTGACTCTCTCATGAATGATATACTGTCAATTAACAGTTGAATGTTGCCCTTTGTTCTTTTAGAAAAAGACACTCACATTCTTTTAAAAGTTGATATTTCATAAATGTTTCAAAACTATTCATGATATAGAAATATGTTAGATTTTTTTTTTAATGAAAATTGGTATGTTAGGAACCAAGGTAGTATGGGCTACCTTTGTCCCACGTTGGTTAGAATGAGATGACCAATGTGTTATTTTAAGTGGCTTGGTTCTCCTGCCTCAATGACTAGCTTTTGAGATGTGGTTTTCCAAAGTGCGTACCTAACAATGGTATTAGAGCTGGTTGTTGACGTTTCGGAGTAGAACCGGTAGAGGATTCTGATCGGGTGTGGCCAAGTGAAATACTGTCAAGAAAATAGAAAATGGGCTACCGTTCAGAGTCTACATTCATAGCTTGCCACACCCTACATATTAAAGAGGTTTTTGTAATTGTACACCAAGTGGTCTATTTTTAGGAGGGAATCCCAATAACAAAAAGGTCACACCATACCCAATCATAATTTTCATACTACAGATTTCTAGTTTTAGGAGGGAATCCCAATAACAAAAAGGTCACTCCATACCCAATCTTAATTTTCATACTCGGTTGGATTTCTAGTTCCGTAGTAGATTTGAAATATTTATGTAAAGTTAAAAGGTAATGTTCCTATTTTTTAAAGGGAAATTACTATAAACAGAAAAAATATCAAACTATTTACAAATATAGGAAAATTTTACTGTCTATCAGTGATAGACTGTGATAGAATTCTATCGCTTTCTATCGCTAAAGCAAATAAATTCTATCGCCTGAGCGATAGAAAGTGATAGAATTCTATCGCGATCTATCTGTGATAGACGGTAAAATTTTTCTATATTTGTAAATAGTTTAGCTTATTTTTCTATATTTGAAAAGAGCCCTTTTTAAAACAAATATGTGATTTTAGTAACGCATTTTAGAATGGTTGGAATGTTGACAGATTAAATAATGGGAGAAACCTCAGAAGAGAAGCACGAGAAGGAGGAGAAGAAAGATAAAGAGAAACATGGAGAAGAAGAAGAAGAAGGTGATGAGAAAAAGAAGGAAAAGAAAGAGAAGAAGAAGAAAGAGAAAGACCCTGCAGATAAGAAAGACCCATCAAAAGTCAGACTGAAGCTTGAGAAGCTTGAAGCCAAGATGCAGGCTTTGGCTGTCAAGAAAGAAGAGCTCTTGAAACTACTCCATGAAGCTGAACAGAATGCTCCACCACCTTCCTCTTGA

mRNA sequence

ATGTCTTTAAGAAATCAGGGCCACCAGAAATTAGATTACCAAGTCGTGTGGCTGAATTCTCGGCAACCCACAGCAATTTCTGGCCATTGGGTTGCCATATTTATGGAGGAAAAGAAAGAGAAGAAGAAGAAAGAGAAAGACCCTGCAGATAAGAAAGACCCATCAAAAGTCAGACTGAAGCTTGAGAAGCTTGAAGCCAAGATGCAGGCTTTGGCTGTCAAGAAAGAAGAGCTCTTGAAACTACTCCATGAAGCTGAACAGAATGCTCCACCACCTTCCTCTTGA

Coding sequence (CDS)

ATGTCTTTAAGAAATCAGGGCCACCAGAAATTAGATTACCAAGTCGTGTGGCTGAATTCTCGGCAACCCACAGCAATTTCTGGCCATTGGGTTGCCATATTTATGGAGGAAAAGAAAGAGAAGAAGAAGAAAGAGAAAGACCCTGCAGATAAGAAAGACCCATCAAAAGTCAGACTGAAGCTTGAGAAGCTTGAAGCCAAGATGCAGGCTTTGGCTGTCAAGAAAGAAGAGCTCTTGAAACTACTCCATGAAGCTGAACAGAATGCTCCACCACCTTCCTCTTGA

Protein sequence

MSLRNQGHQKLDYQVVWLNSRQPTAISGHWVAIFMEEKKEKKKKEKDPADKKDPSKVRLKLEKLEAKMQALAVKKEELLKLLHEAEQNAPPPSS
Homology
BLAST of HG10020801 vs. NCBI nr
Match: XP_008437610.1 (PREDICTED: protein PXR1 [Cucumis melo])

HSP 1 Score: 89.7 bits (221), Expect = 1.4e-14
Identity = 49/58 (84.48%), Postives = 56/58 (96.55%), Query Frame = 0

Query: 36 EEKKEKKKKEKDPADKKDPSKVRLKLEKLEAKMQALAVKKEELLKLLHEAEQNAPPPS 94
          +E+K+KKKKEK+PADKKDP+K+R KLEKLEAKMQALAVKKEE+LKLLHEAEQN PPPS
Sbjct: 29 DEEKKKKKKEKNPADKKDPTKLRQKLEKLEAKMQALAVKKEEILKLLHEAEQNPPPPS 86

BLAST of HG10020801 vs. NCBI nr
Match: XP_022994123.1 (protein PXR1 [Cucurbita maxima])

HSP 1 Score: 80.9 bits (198), Expect = 6.6e-12
Identity = 48/62 (77.42%), Postives = 55/62 (88.71%), Query Frame = 0

Query: 36  EEKKEKKKKEKDPADKKDPSKVRLKLEKLEAKMQALAVKKEELLKLLHEAEQN---APPP 95
           +E ++K+KK KDPADKKDP+K+R KLEKLE KMQALAVKKEE+LKLLHEAEQN   APPP
Sbjct: 41  KEGEKKEKKPKDPADKKDPTKLRQKLEKLEVKMQALAVKKEEVLKLLHEAEQNAAAAPPP 100

BLAST of HG10020801 vs. NCBI nr
Match: KAG7012203.1 (Protein QUIRKY, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 78.2 bits (191), Expect = 4.3e-11
Identity = 50/68 (73.53%), Postives = 54/68 (79.41%), Query Frame = 0

Query: 36   EEKKEKK--------KKEKDPADKKDPSKVRLKLEKLEAKMQALAVKKEELLKLLHEAEQ 93
            E+KKEKK        KK KDPADKKDP+K+R KLEKLE KMQALAVKKEE+LKLLHEAEQ
Sbjct: 1143 EKKKEKKGKDGEKKEKKPKDPADKKDPTKLRQKLEKLEVKMQALAVKKEEILKLLHEAEQ 1202

BLAST of HG10020801 vs. NCBI nr
Match: KAG7019857.1 (hypothetical protein SDJN02_18822, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 78.2 bits (191), Expect = 4.3e-11
Identity = 44/56 (78.57%), Postives = 51/56 (91.07%), Query Frame = 0

Query: 36  EEKKEKKKKEKDPADKKDPSKVRLKLEKLEAKMQALAVKKEELLKLLHEAEQNAPP 92
           EE ++K+KK+KDPAD KDP K+R KLEKLEAKMQALAVKKEE+LKL+HEAEQNA P
Sbjct: 47  EEAEKKEKKKKDPADMKDPLKLRQKLEKLEAKMQALAVKKEEILKLIHEAEQNAAP 102

BLAST of HG10020801 vs. NCBI nr
Match: KAG6584261.1 (hypothetical protein SDJN03_20193, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 77.8 bits (190), Expect = 5.6e-11
Identity = 44/56 (78.57%), Postives = 51/56 (91.07%), Query Frame = 0

Query: 36  EEKKEKKKKEKDPADKKDPSKVRLKLEKLEAKMQALAVKKEELLKLLHEAEQNAPP 92
           EE ++K+KK+KDPAD KDP K+R KLEKLEAKMQALAVKKEE+LKL+HEAEQNA P
Sbjct: 45  EEGEKKEKKKKDPADMKDPLKLRQKLEKLEAKMQALAVKKEEILKLIHEAEQNAAP 100

BLAST of HG10020801 vs. ExPASy TrEMBL
Match: A0A0A0LQQ8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G045530 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 5.3e-15
Identity = 52/59 (88.14%), Postives = 56/59 (94.92%), Query Frame = 0

Query: 36 EEKKEKKKKEKDPADKKDPSKVRLKLEKLEAKMQALAVKKEELLKLLHEAEQNAPPPSS 95
          EEKK+KKKKEKDPADKKDP+K+R KLEKLE KMQALAVKKEE+LKLLHEAEQN PPPSS
Sbjct: 34 EEKKKKKKKEKDPADKKDPTKLRQKLEKLEVKMQALAVKKEEILKLLHEAEQN-PPPSS 91

BLAST of HG10020801 vs. ExPASy TrEMBL
Match: A0A1S3AV24 (protein PXR1 OS=Cucumis melo OX=3656 GN=LOC103482967 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 6.9e-15
Identity = 49/58 (84.48%), Postives = 56/58 (96.55%), Query Frame = 0

Query: 36 EEKKEKKKKEKDPADKKDPSKVRLKLEKLEAKMQALAVKKEELLKLLHEAEQNAPPPS 94
          +E+K+KKKKEK+PADKKDP+K+R KLEKLEAKMQALAVKKEE+LKLLHEAEQN PPPS
Sbjct: 29 DEEKKKKKKEKNPADKKDPTKLRQKLEKLEAKMQALAVKKEEILKLLHEAEQNPPPPS 86

BLAST of HG10020801 vs. ExPASy TrEMBL
Match: A0A6J1K499 (protein PXR1 OS=Cucurbita maxima OX=3661 GN=LOC111489952 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 3.2e-12
Identity = 48/62 (77.42%), Postives = 55/62 (88.71%), Query Frame = 0

Query: 36  EEKKEKKKKEKDPADKKDPSKVRLKLEKLEAKMQALAVKKEELLKLLHEAEQN---APPP 95
           +E ++K+KK KDPADKKDP+K+R KLEKLE KMQALAVKKEE+LKLLHEAEQN   APPP
Sbjct: 41  KEGEKKEKKPKDPADKKDPTKLRQKLEKLEVKMQALAVKKEEVLKLLHEAEQNAAAAPPP 100

BLAST of HG10020801 vs. ExPASy TrEMBL
Match: A0A6J1E7S6 (protein PXR1 OS=Cucurbita moschata OX=3662 GN=LOC111431428 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 2.3e-10
Identity = 45/55 (81.82%), Postives = 48/55 (87.27%), Query Frame = 0

Query: 37  EKKEKKKKEKDPADKKDPSKVRLKLEKLEAKMQALAVKKEELLKLLHEAEQNAPP 92
           EKKEKKK  KDPAD KDP K+R KLEKLE KMQALAVKKEE+LKL+HEAEQNA P
Sbjct: 74  EKKEKKK--KDPADMKDPLKLRQKLEKLEDKMQALAVKKEEILKLIHEAEQNAAP 126

BLAST of HG10020801 vs. ExPASy TrEMBL
Match: A0A5D3BJ58 (Protein PXR1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G003090 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 8.7e-10
Identity = 39/44 (88.64%), Postives = 42/44 (95.45%), Query Frame = 0

Query: 50 DKKDPSKVRLKLEKLEAKMQALAVKKEELLKLLHEAEQNAPPPS 94
          DKKDP+K+R KLEKLEAKMQALAVKKEE+LKLLHEAEQN PPPS
Sbjct: 27 DKKDPTKLRQKLEKLEAKMQALAVKKEEILKLLHEAEQNPPPPS 70

BLAST of HG10020801 vs. TAIR 10
Match: AT5G62750.1 (unknown protein; Has 24942 Blast hits to 11726 proteins in 897 species: Archae - 48; Bacteria - 2086; Metazoa - 8361; Fungi - 2243; Plants - 1040; Viruses - 210; Other Eukaryotes - 10954 (source: NCBI BLink). )

HSP 1 Score: 61.6 bits (148), Expect = 3.8e-10
Identity = 33/67 (49.25%), Postives = 53/67 (79.10%), Query Frame = 0

Query: 36  EEKKEKKKKEKDPADKKDPSKVRLKLEKLEAKMQALAVKKEELLKLLHEAEQ-------- 95
           ++K +K KKEK+P DKKDP K+++KL+K+E K+QA+ +KK+E++KL+H+AEQ        
Sbjct: 58  KKKDKKAKKEKNPEDKKDPEKLKMKLQKIEEKIQAMVLKKDEIVKLIHDAEQAKPSTAAV 117

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_008437610.11.4e-1484.48PREDICTED: protein PXR1 [Cucumis melo][more]
XP_022994123.16.6e-1277.42protein PXR1 [Cucurbita maxima][more]
KAG7012203.14.3e-1173.53Protein QUIRKY, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG7019857.14.3e-1178.57hypothetical protein SDJN02_18822, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6584261.15.6e-1178.57hypothetical protein SDJN03_20193, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LQQ85.3e-1588.14Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G045530 PE=4 SV=1[more]
A0A1S3AV246.9e-1584.48protein PXR1 OS=Cucumis melo OX=3656 GN=LOC103482967 PE=4 SV=1[more]
A0A6J1K4993.2e-1277.42protein PXR1 OS=Cucurbita maxima OX=3661 GN=LOC111489952 PE=4 SV=1[more]
A0A6J1E7S62.3e-1081.82protein PXR1 OS=Cucurbita moschata OX=3662 GN=LOC111431428 PE=4 SV=1[more]
A0A5D3BJ588.7e-1088.64Protein PXR1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G003090 ... [more]
Match NameE-valueIdentityDescription
AT5G62750.13.8e-1049.25unknown protein; Has 24942 Blast hits to 11726 proteins in 897 species: Archae -... [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 61..88

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10020801.1HG10020801.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016853 isomerase activity