HG10020729 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10020729
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Down syndrome critical region protein 3 homolog isoform X1
Location	Chr05: 1922962 .. 1925359 (+)
RNA-Seq Expression	HG10020729
Synteny	HG10020729

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATTTTATGGGGAAAAAGGTTCGTGGAGGATCTGCGGGAGTTATTGAGTCAGTTTACGGTGTCATCAAGCCTATTGTGATAGTGTGAGTTGGCTTTCTTTACAATTTTTAAGTGAATTATGGATTCTGTAGGTGTACTATTATGTGAAAGTCATGTAATATTTGAATTTAACTGCAAATTCGTTTCCACTTCTGGAGATGATAGCAATCTCTTTATAGATTACATAATTGTCGATTACACTATAAGCAATACAATATGAAATCATCTTGGTTAGGGATTAAGGAATTTAGTGCTTGATTACTGAGCTTCTCTTCCTTTCTCCGCCTGAAATTTGTATTGTATTGGAAATGGTTCTTGCATCATTTTATCCTTAAATTTCTCGCACGGTTATACTCTATCTGGCTCTAGAATTGATTTTGTTTCCTTCACCCTCATAATAATAGGAATAGGAGCATTGAGGTAAGACCATCTGGAAAGCTTGCTTCAGGTACAACCGAGGTAAATTAGCCATTGAGAGCTATGAAATCTCAAAGTTTTTACATGAATCAATGTTTTATAAGTTTATGTTTATCGTTATCGTGTATGGTTGTTCTTGTACCCTCAGAGCATATTTTCTTGACCCTGGATTACAGCCTTACAAATTGTCCATACTGTACCGAATAGTTTTTCACTTATTTGTTGCCTGCACTTTTAGATAGTTAATTAAATGAATTCCCTCAAAATCTTGCTAGATTCCTTTTTCCGTAATTCTGAGACAGCCAAATGAAAACTTGGGAAAATTTTACGAGACTTTTCATGGAACTGACATAAACATTCAGGTGAGTGTTGTGAATCTTTCTACTTTGCTTTTGACTCTTCAGACTATGAGTCAATGCCTAATGGCATGGTTTTCACCATTATTCACCTACCCGCTCCAAAAAGAAATGATATTTCTCATAACATGAACCTGATATTTATCAATTACTGAATAATACGATAGTATTTAGTAACTGTAGATATAAGCAGAGGATACCTGCACAAGTCATTAACTGCCACAATCGAGTTTATAGTTGAAAGTGATACAGGTATGCTTTAGTTGACCCTTTAACGTTATGTGTTTAACTCAAGTATATGAAATTAAATTTTCCTTTTGTTCTGTTCCTAGCTGATTTCCTTGAGCGGCCGCTGTCCTCGGAGATGGTTATCTTTTACATCACTCAGGATACACAAAGGCATCCACTACTTCCTGAATTAAAATCAGGTCTTTTCATCATTATTGTTCCTTTTCTTTCATGTTTTATCTTATCAGGTGTGATTTTAATTTATTTCATCTTCACATGGAAATATTTGCATATAAGCCAATAGAAAAAGTAAAGTATTGTTTAATTTTTTTATATTCTATTTTAGTTTATCTTTTTGTATTTCAGTACATATCCTTTGCTGATGAGAGGTACTTCTAATTAGGTGGTTTTCGAGTAACTGGGAAAATGTCAACTCTGTGCTCTCTTTCAGATCCCATCACTGGTGAATTAATAGTAGAAACATCTGCAGTTCCTATTAATTCAATTGACATTCACTTGTGTCGTGTGGAATCTGTTATTCTTGGAGAGAGAATCATAACTGAAACCTCTGTGATCCAAACTACCCAAGTATGTGCCATCTCATCTTCTCAGCATAGTACTTTTTGAAAGAACAAAATTTCGTTTAAAATTTTGATTTTGTCTTTTATTTCATCATTAGATAGCAGATGGAGATGTCTGTCGCAGCATTACTCTGCCTATTTATGTTATACTACCCCGCCTTTTGACTTGCCCAACAGTATTTGCTGGGTGAGTTGCAAATACTATAACTCTACCATTTTTATCTTTTATATTTTTTATATTTTAACAACAACAAATGTGGGGTAGATTTGAACCTCTGACTTTAGAAAAAGGAGTAGATGCATCTGAAATACGCTCCTCATGATGGCTTCAATAACTGGACAGGGATATCTAAAGCATTTGTATTAAATTTGGAGTTTAGTTAGGCCTTTTCATTTCCCATTTGATTATAATGAATGTTAGCATTGTGTCAGAATGAATTTATTTTGTTGATGGTTGTAAACAACTTTCGTAAGTTGTCCCCCTTCAAAGTTCTCTCTGTGGTTGGTATCAGATCTTGTTGAAGTGCGGTTTCTTGGTCGGATGCGTGTCTATTTGTTTCTTTTCTGTCACTCTTATTTTTTATTTGCCATTTGTTCCGCTAATAACTTGTCCTATTTGTTTATGACAGTCCATTTTCAATTGAATTCCAAGTTTACATCGTTATAACCTTTCAGTCAGAGCTATCAAAGTTACATCCCAAGACTGATCCAAGAACTCCAAGACTATGGGTGAGCATCTCTCTCTGGGATTGTTTGGGCTTTTATCTTATTTAA

mRNA sequence

ATGCATTTTATGGGGAAAAAGGTTCGTGGAGGATCTGCGGGAGTTATTGAGTCAGTTTACGGTGTCATCAAGCCTATTGTGATAGTGAATAGGAGCATTGAGGTAAGACCATCTGGAAAGCTTGCTTCAGGTACAACCGAGATTCCTTTTTCCGTAATTCTGAGACAGCCAAATGAAAACTTGGGAAAATTTTACGAGACTTTTCATGGAACTGACATAAACATTCAGTATTTAGTAACTGTAGATATAAGCAGAGGATACCTGCACAAGTCATTAACTGCCACAATCGAGTTTATAGTTGAAAGTGATACAGCTGATTTCCTTGAGCGGCCGCTGTCCTCGGAGATGGTTATCTTTTACATCACTCAGGATACACAAAGGCATCCACTACTTCCTGAATTAAAATCAGATCCCATCACTGGTGAATTAATAGTAGAAACATCTGCAGTTCCTATTAATTCAATTGACATTCACTTGTGTCGTGTGGAATCTGTTATTCTTGGAGAGAGAATCATAACTGAAACCTCTGTGATCCAAACTACCCAAATAGCAGATGGAGATGTCTGTCGCAGCATTACTCTGCCTATTTATGTTATACTACCCCGCCTTTTGACTTGCCCAACAGTATTTGCTGGTCCATTTTCAATTGAATTCCAAGTTTACATCGTTATAACCTTTCAGTCAGAGCTATCAAAGTTACATCCCAAGACTGATCCAAGAACTCCAAGACTATGGGTGAGCATCTCTCTCTGGGATTGTTTGGGCTTTTATCTTATTTAA

Coding sequence (CDS)

ATGCATTTTATGGGGAAAAAGGTTCGTGGAGGATCTGCGGGAGTTATTGAGTCAGTTTACGGTGTCATCAAGCCTATTGTGATAGTGAATAGGAGCATTGAGGTAAGACCATCTGGAAAGCTTGCTTCAGGTACAACCGAGATTCCTTTTTCCGTAATTCTGAGACAGCCAAATGAAAACTTGGGAAAATTTTACGAGACTTTTCATGGAACTGACATAAACATTCAGTATTTAGTAACTGTAGATATAAGCAGAGGATACCTGCACAAGTCATTAACTGCCACAATCGAGTTTATAGTTGAAAGTGATACAGCTGATTTCCTTGAGCGGCCGCTGTCCTCGGAGATGGTTATCTTTTACATCACTCAGGATACACAAAGGCATCCACTACTTCCTGAATTAAAATCAGATCCCATCACTGGTGAATTAATAGTAGAAACATCTGCAGTTCCTATTAATTCAATTGACATTCACTTGTGTCGTGTGGAATCTGTTATTCTTGGAGAGAGAATCATAACTGAAACCTCTGTGATCCAAACTACCCAAATAGCAGATGGAGATGTCTGTCGCAGCATTACTCTGCCTATTTATGTTATACTACCCCGCCTTTTGACTTGCCCAACAGTATTTGCTGGTCCATTTTCAATTGAATTCCAAGTTTACATCGTTATAACCTTTCAGTCAGAGCTATCAAAGTTACATCCCAAGACTGATCCAAGAACTCCAAGACTATGGGTGAGCATCTCTCTCTGGGATTGTTTGGGCTTTTATCTTATTTAA

Protein sequence

MHFMGKKVRGGSAGVIESVYGVIKPIVIVNRSIEVRPSGKLASGTTEIPFSVILRQPNENLGKFYETFHGTDINIQYLVTVDISRGYLHKSLTATIEFIVESDTADFLERPLSSEMVIFYITQDTQRHPLLPELKSDPITGELIVETSAVPINSIDIHLCRVESVILGERIITETSVIQTTQIADGDVCRSITLPIYVILPRLLTCPTVFAGPFSIEFQVYIVITFQSELSKLHPKTDPRTPRLWVSISLWDCLGFYLI

Homology

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BLAST of HG10020729 vs. NCBI nr
Match: XP_038895698.1 (vacuolar protein sorting-associated protein 26C isoform X2 [Benincasa hispida])

HSP 1 Score: 462.2 bits (1188), Expect = 2.9e-126
Identity = 237/264 (89.77%), Postives = 244/264 (92.42%), Query Frame = 0


Query: 1   MHFMGKKVRGGSAGVIESVYGVIKPIVIVNRSIEVRPSGKLASGTTEIPFSVILRQPNEN 60
           MHFMGKKVRGGSAGVIESVYGVIKPI IVNR +EVRPSGKLASGTTEIPFSVILRQPNE 
Sbjct: 1   MHFMGKKVRGGSAGVIESVYGVIKPIAIVNRIVEVRPSGKLASGTTEIPFSVILRQPNEI 60

Query: 61  LGKFYETFHGTDINIQYLVTVDISRGYLHKSLTATIEFIVESDTADFLERPLSSEMVIFY 120
           LGKFYETFHGTDINIQYLVTVDISRGYLHKSL+ATIEFIVESDTADF+ERPLSSEMVIFY
Sbjct: 61  LGKFYETFHGTDINIQYLVTVDISRGYLHKSLSATIEFIVESDTADFVERPLSSEMVIFY 120

Query: 121 ITQDTQRHPLLPELK----------------SDPITGELIVETSAVPINSIDIHLCRVES 180
           ITQDTQRHPLLPELK                SDPITGELIVETSAVPINSIDIHLCRVES
Sbjct: 121 ITQDTQRHPLLPELKSGGFRVTGKMSTLCSLSDPITGELIVETSAVPINSIDIHLCRVES 180

Query: 181 VILGERIITETSVIQTTQIADGDVCRSITLPIYVILPRLLTCPTVFAGPFSIEFQVYIVI 240
           VILGERIITETSVIQTTQIADGDVCR ITLPIYVILPRLLTCPTVFAGPFSIEF+VYIVI
Sbjct: 181 VILGERIITETSVIQTTQIADGDVCRKITLPIYVILPRLLTCPTVFAGPFSIEFKVYIVI 240

Query: 241 TFQSELSKLHPKTDPRTPRLWVSI 249
           TF+SELSKLHPKTDPRTPRLW++I
Sbjct: 241 TFESELSKLHPKTDPRTPRLWLAI 264

[Close]

BLAST of HG10020729 vs. NCBI nr
Match: XP_038895697.1 (vacuolar protein sorting-associated protein 26C isoform X1 [Benincasa hispida])

HSP 1 Score: 447.2 bits (1149), Expect = 9.6e-122
Identity = 230/258 (89.15%), Postives = 238/258 (92.25%), Query Frame = 0


Query: 7   KVRGGSAGVIESVYGVIKPIVIVNRSIEVRPSGKLASGTTEIPFSVILRQPNENLGKFYE 66
           +VRGGSAGVIESVYGVIKPI IVNR +EVRPSGKLASGTTEIPFSVILRQPNE LGKFYE
Sbjct: 48  QVRGGSAGVIESVYGVIKPIAIVNRIVEVRPSGKLASGTTEIPFSVILRQPNEILGKFYE 107

Query: 67  TFHGTDINIQYLVTVDISRGYLHKSLTATIEFIVESDTADFLERPLSSEMVIFYITQDTQ 126
           TFHGTDINIQYLVTVDISRGYLHKSL+ATIEFIVESDTADF+ERPLSSEMVIFYITQDTQ
Sbjct: 108 TFHGTDINIQYLVTVDISRGYLHKSLSATIEFIVESDTADFVERPLSSEMVIFYITQDTQ 167

Query: 127 RHPLLPELK----------------SDPITGELIVETSAVPINSIDIHLCRVESVILGER 186
           RHPLLPELK                SDPITGELIVETSAVPINSIDIHLCRVESVILGER
Sbjct: 168 RHPLLPELKSGGFRVTGKMSTLCSLSDPITGELIVETSAVPINSIDIHLCRVESVILGER 227

Query: 187 IITETSVIQTTQIADGDVCRSITLPIYVILPRLLTCPTVFAGPFSIEFQVYIVITFQSEL 246
           IITETSVIQTTQIADGDVCR ITLPIYVILPRLLTCPTVFAGPFSIEF+VYIVITF+SEL
Sbjct: 228 IITETSVIQTTQIADGDVCRKITLPIYVILPRLLTCPTVFAGPFSIEFKVYIVITFESEL 287

Query: 247 SKLHPKTDPRTPRLWVSI 249
           SKLHPKTDPRTPRLW++I
Sbjct: 288 SKLHPKTDPRTPRLWLAI 305

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BLAST of HG10020729 vs. NCBI nr
Match: XP_004137506.1 (vacuolar protein sorting-associated protein 26C [Cucumis sativus] >KGN64179.1 hypothetical protein Csa_013429 [Cucumis sativus])

HSP 1 Score: 443.7 bits (1140), Expect = 1.1e-120
Identity = 228/258 (88.37%), Postives = 238/258 (92.25%), Query Frame = 0


Query: 7   KVRGGSAGVIESVYGVIKPIVIVNRSIEVRPSGKLASGTTEIPFSVILRQPNENLGKFYE 66
           +VRGGSAGVIESVYGVIKPI IVNRSI V PSGKLASGT EIPFSVILRQPNENLGK+YE
Sbjct: 49  QVRGGSAGVIESVYGVIKPISIVNRSILVSPSGKLASGTNEIPFSVILRQPNENLGKYYE 108

Query: 67  TFHGTDINIQYLVTVDISRGYLHKSLTATIEFIVESDTADFLERPLSSEMVIFYITQDTQ 126
           TFHGTDINIQYLVTVDISRGYLHKSL+AT+EFIVESDTADFLERPLSSEMVIFYITQDTQ
Sbjct: 109 TFHGTDINIQYLVTVDISRGYLHKSLSATMEFIVESDTADFLERPLSSEMVIFYITQDTQ 168

Query: 127 RHPLLPELK----------------SDPITGELIVETSAVPINSIDIHLCRVESVILGER 186
           RHPLLPEL+                SDP+TGELIVETSAVPINSIDIHLCRVESVILGER
Sbjct: 169 RHPLLPELRSGGFRVTGKMSTLCSLSDPLTGELIVETSAVPINSIDIHLCRVESVILGER 228

Query: 187 IITETSVIQTTQIADGDVCRSITLPIYVILPRLLTCPTVFAGPFSIEFQVYIVITFQSEL 246
           IITETSVIQTTQIADGDVCR+ITLPIYVILPRLLTCPTVFAGPFSIEF+VYIVITFQSEL
Sbjct: 229 IITETSVIQTTQIADGDVCRNITLPIYVILPRLLTCPTVFAGPFSIEFKVYIVITFQSEL 288

Query: 247 SKLHPKTDPRTPRLWVSI 249
           SKLHPKTDPRTPRLW++I
Sbjct: 289 SKLHPKTDPRTPRLWLAI 306

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BLAST of HG10020729 vs. NCBI nr
Match: XP_008464938.1 (PREDICTED: Down syndrome critical region protein 3 homolog isoform X1 [Cucumis melo])

HSP 1 Score: 443.4 bits (1139), Expect = 1.4e-120
Identity = 229/258 (88.76%), Postives = 239/258 (92.64%), Query Frame = 0


Query: 7   KVRGGSAGVIESVYGVIKPIVIVNRSIEVRPSGKLASGTTEIPFSVILRQPNENLGKFYE 66
           +VRGGSAGVIESVYGVIKPI+IVNRSI VRPSGKLASGT EIPFSVILRQP+ENLGKFYE
Sbjct: 49  QVRGGSAGVIESVYGVIKPILIVNRSILVRPSGKLASGTNEIPFSVILRQPSENLGKFYE 108

Query: 67  TFHGTDINIQYLVTVDISRGYLHKSLTATIEFIVESDTADFLERPLSSEMVIFYITQDTQ 126
           TFHGTDINIQYLVTVDISRGYLHKSL+AT+EFIVESDTADFLERPLSSEMVIFYITQDTQ
Sbjct: 109 TFHGTDINIQYLVTVDISRGYLHKSLSATMEFIVESDTADFLERPLSSEMVIFYITQDTQ 168

Query: 127 RHPLLPELK----------------SDPITGELIVETSAVPINSIDIHLCRVESVILGER 186
           RHPLLPEL+                SDPITGELIVETSAV INSIDIHLCRVESVILGER
Sbjct: 169 RHPLLPELRSGGFRVTGKMSTLCSLSDPITGELIVETSAVLINSIDIHLCRVESVILGER 228

Query: 187 IITETSVIQTTQIADGDVCRSITLPIYVILPRLLTCPTVFAGPFSIEFQVYIVITFQSEL 246
           IITETSVIQTTQIADGDVCR+ITLPIYVILPRLLTCPTVFAGPFSIEF+VYIVITFQSEL
Sbjct: 229 IITETSVIQTTQIADGDVCRNITLPIYVILPRLLTCPTVFAGPFSIEFKVYIVITFQSEL 288

Query: 247 SKLHPKTDPRTPRLWVSI 249
           SKLHPKTDPRTPRLW++I
Sbjct: 289 SKLHPKTDPRTPRLWLAI 306

[Close]

BLAST of HG10020729 vs. NCBI nr
Match: XP_022924207.1 (Down syndrome critical region protein 3 homolog isoform X1 [Cucurbita moschata] >XP_023520407.1 Down syndrome critical region protein 3 homolog isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 440.7 bits (1132), Expect = 9.0e-120
Identity = 227/258 (87.98%), Postives = 236/258 (91.47%), Query Frame = 0


Query: 7   KVRGGSAGVIESVYGVIKPIVIVNRSIEVRPSGKLASGTTEIPFSVILRQPNENLGKFYE 66
           +VRGGSAGVIESVYGVIKP+ IVNRSIEVRPSGKL SGTTEIPFSVILRQP+ENLGKFYE
Sbjct: 48  QVRGGSAGVIESVYGVIKPLSIVNRSIEVRPSGKLPSGTTEIPFSVILRQPSENLGKFYE 107

Query: 67  TFHGTDINIQYLVTVDISRGYLHKSLTATIEFIVESDTADFLERPLSSEMVIFYITQDTQ 126
           TFHGTDINIQYLVTV ISRGYLHKSL+ATIEFIVESDTADFLERPLSSEMVIFYITQDTQ
Sbjct: 108 TFHGTDINIQYLVTVGISRGYLHKSLSATIEFIVESDTADFLERPLSSEMVIFYITQDTQ 167

Query: 127 RHPLLPELK----------------SDPITGELIVETSAVPINSIDIHLCRVESVILGER 186
           RHPLLPELK                SDPITGEL VE SAVPI+SIDIHLCRVESVILGER
Sbjct: 168 RHPLLPELKSGGFRVTGKMATLCSLSDPITGELTVEASAVPISSIDIHLCRVESVILGER 227

Query: 187 IITETSVIQTTQIADGDVCRSITLPIYVILPRLLTCPTVFAGPFSIEFQVYIVITFQSEL 246
           IITETSVIQTTQIADGDVCR+ITLPIY ILPRLLTCPTVFAGPFSIEF+VYIVITFQSEL
Sbjct: 228 IITETSVIQTTQIADGDVCRNITLPIYAILPRLLTCPTVFAGPFSIEFKVYIVITFQSEL 287

Query: 247 SKLHPKTDPRTPRLWVSI 249
           SKLHPKTDPRTPRLW++I
Sbjct: 288 SKLHPKTDPRTPRLWLAI 305

[Close]

BLAST of HG10020729 vs. ExPASy Swiss-Prot
Match: Q5RF33 (Vacuolar protein sorting-associated protein 26C OS=Pongo abelii OX=9601 GN=VPS26C PE=2 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 2.6e-37
Identity = 94/229 (41.05%), Postives = 128/229 (55.90%), Query Frame = 0


Query: 12  SAGVIESVYGVIKPIVIVNRSIEVRPSGKLASGTTEIPFSVILRQPNENLGKFYETFHGT 71
           S GV E+ Y  +KPI I+N +IE+   GK  SG TEIPF   L      +   YET+HG 
Sbjct: 55  SVGVFEAFYNSVKPIQIINSNIEMVKPGKFPSGKTEIPFEFPLHVKGNKV--LYETYHGV 114

Query: 72  DINIQYLVTVDISRGYLHKSLTATIEFIVESDTADFLERPLSSEMVIFYIT----QDTQR 131
            +NIQY +  D+ R  L K LT T EFIV S      +   S   V F IT    Q+ + 
Sbjct: 115 FVNIQYTLRCDMKRSLLAKDLTKTCEFIVHSAPQ---KGKFSPSPVHFTITPETLQNARE 174

Query: 132 HPLLPE------------LKSDPITGELIVETSAVPINSIDIHLCRVESVILGERIITET 191
             LLP+            + + P+TGEL+VE+S   I S+++ L RVE+    E    + 
Sbjct: 175 RALLPKFLLRGHLNSTNCVITQPLTGELVVESSEAAIRSVELQLVRVETCGCAEGYARDA 234

Query: 192 SVIQTTQIADGDVCRSITLPIYVILPRLLTCPTVFAGPFSIEFQVYIVI 225
           + IQ  QIADGDVCR +++PIY++ PRL TCPT+    F +EF+V IV+
Sbjct: 235 TEIQNIQIADGDVCRGLSVPIYMVFPRLFTCPTLETTNFKVEFEVNIVV 278

[Close]

BLAST of HG10020729 vs. ExPASy Swiss-Prot
Match: O14972 (Vacuolar protein sorting-associated protein 26C OS=Homo sapiens OX=9606 GN=VPS26C PE=1 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 4.5e-37
Identity = 92/226 (40.71%), Postives = 126/226 (55.75%), Query Frame = 0


Query: 12  SAGVIESVYGVIKPIVIVNRSIEVRPSGKLASGTTEIPFSVILRQPNENLGKFYETFHGT 71
           S GV E+ Y  +KPI I+N +IE+   GK  SG TEIPF   L      +   YET+HG 
Sbjct: 55  SVGVFEAFYNSVKPIQIINSTIEMVKPGKFPSGKTEIPFEFPLHLKGNKV--LYETYHGV 114

Query: 72  DINIQYLVTVDISRGYLHKSLTATIEFIVESDTADFLERPLSSEMVIFYIT-QDTQRHPL 131
            +NIQY +  D+ R  L K LT T EFIV S        P   +  I   T Q+ +   L
Sbjct: 115 FVNIQYTLRCDMKRSLLAKDLTKTCEFIVHSAPQKGKFTPSPVDFTITPETLQNVKERAL 174

Query: 132 LPE------------LKSDPITGELIVETSAVPINSIDIHLCRVESVILGERIITETSVI 191
           LP+            + + P+TGEL+VE+S   I S+++ L RVE+    E    + + I
Sbjct: 175 LPKFLLRGHLNSTNCVITQPLTGELVVESSEAAIRSVELQLVRVETCGCAEGYARDATEI 234

Query: 192 QTTQIADGDVCRSITLPIYVILPRLLTCPTVFAGPFSIEFQVYIVI 225
           Q  QIADGDVCR +++PIY++ PRL TCPT+    F +EF+V IV+
Sbjct: 235 QNIQIADGDVCRGLSVPIYMVFPRLFTCPTLETTNFKVEFEVNIVV 278

[Close]

BLAST of HG10020729 vs. ExPASy Swiss-Prot
Match: O35075 (Vacuolar protein sorting-associated protein 26C OS=Mus musculus OX=10090 GN=Vps26c PE=1 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 4.9e-36
Identity = 90/234 (38.46%), Postives = 130/234 (55.56%), Query Frame = 0


Query: 12  SAGVIESVYGVIKPIVIVNRSIEVRPSGKLASGTTEIPFSVILRQPNENLGKFYETFHGT 71
           S GV E+ Y  +KPI I+N +I+V   GK+ SG TE+PF   L      +   YET+HG 
Sbjct: 55  SVGVFEAFYNSVKPIQIINSTIDVLKPGKIPSGKTEVPFEFPLLVKGSKV--LYETYHGV 114

Query: 72  DINIQYLVTVDISRGYLHKSLTATIEFIVESDTADFLERPLSSEMVIFYIT----QDTQR 131
            +NIQY +  D+ R  L K LT T EFIV S      +  L+   V F IT    Q+ + 
Sbjct: 115 FVNIQYTLRCDMRRSLLAKDLTKTCEFIVHSAPQ---KGKLTPSPVDFTITPETLQNVKE 174

Query: 132 HPLLPEL------------KSDPITGELIVETSAVPINSIDIHLCRVESVILGERIITET 191
              LP+              + P+TGEL+VE S   I SI++ L RVE+    E    + 
Sbjct: 175 RASLPKFFIRGHLNSTNCAITQPLTGELVVEHSDAAIRSIELQLVRVETCGCAEGYARDA 234

Query: 192 SVIQTTQIADGDVCRSITLPIYVILPRLLTCPTVFAGPFSIEFQVYIVITFQSE 230
           + IQ  QIADGD+CR++++P+Y++ PRL TCPT+    F +EF+V +V+   ++
Sbjct: 235 TEIQNIQIADGDICRNLSVPLYMVFPRLFTCPTLETTNFKVEFEVNVVVLLHAD 283

[Close]

BLAST of HG10020729 vs. ExPASy Swiss-Prot
Match: Q54DI8 (Vacuolar protein sorting-associated protein 26C OS=Dictyostelium discoideum OX=44689 GN=vps26c PE=3 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 6.9e-30
Identity = 82/238 (34.45%), Postives = 126/238 (52.94%), Query Frame = 0


Query: 12  SAGVIESVYGVIKPIVIVNRSIEV-RPSGKLASGTTEIPFSVILRQ-PNENLGKFYETFH 71
           S G+ E+ Y  +KPI +++ +I V    GK  +G TE+PF   L   PN+ L   Y+T+H
Sbjct: 55  SVGLFEAFYNSLKPITLMHYTISVTNGGGKFQAGITELPFEFTLEPLPNQQL---YDTYH 114

Query: 72  GTDINIQYLVTVDISRGYLHKSLTATIEFIVE--SDTADFLERPLSSEMVIFYITQDTQ- 131
           G  +NIQY +  D+ RG L K L+ TIEFIVE  S   + L +     ++ F IT D+  
Sbjct: 115 GVFVNIQYSIKCDVKRGILSKDLSKTIEFIVEVPSQNKEVLMKSTPESLITFNITPDSLV 174

Query: 132 -----RHPLLPELK------------SDPITGELIVETSAVPINSIDIHLCRVESVILGE 191
                    +P  K            ++   G +I+E++   I S+++ L RVE+    +
Sbjct: 175 NFKKISKADVPTFKISGGLVSAICNINEAFQGHMIIESADTVIKSVELQLVRVETCGCAD 234

Query: 192 RIITETSVIQTTQIADGDVCRSITLPIYVILPRLLTCPTVFAGPFSIEFQVYIVITFQ 228
               E + IQ  QIADGD+ R+  +P+Y++ PRL TC +     F IEF+V +VI  +
Sbjct: 235 GYAREVTEIQNIQIADGDIWRNFKIPLYMVFPRLFTCISTAGKTFKIEFEVNLVIMLE 289

[Close]

BLAST of HG10020729 vs. ExPASy TrEMBL
Match: A0A0A0LT45 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042860 PE=3 SV=1)

HSP 1 Score: 443.7 bits (1140), Expect = 5.2e-121
Identity = 228/258 (88.37%), Postives = 238/258 (92.25%), Query Frame = 0


Query: 7   KVRGGSAGVIESVYGVIKPIVIVNRSIEVRPSGKLASGTTEIPFSVILRQPNENLGKFYE 66
           +VRGGSAGVIESVYGVIKPI IVNRSI V PSGKLASGT EIPFSVILRQPNENLGK+YE
Sbjct: 49  QVRGGSAGVIESVYGVIKPISIVNRSILVSPSGKLASGTNEIPFSVILRQPNENLGKYYE 108

Query: 67  TFHGTDINIQYLVTVDISRGYLHKSLTATIEFIVESDTADFLERPLSSEMVIFYITQDTQ 126
           TFHGTDINIQYLVTVDISRGYLHKSL+AT+EFIVESDTADFLERPLSSEMVIFYITQDTQ
Sbjct: 109 TFHGTDINIQYLVTVDISRGYLHKSLSATMEFIVESDTADFLERPLSSEMVIFYITQDTQ 168

Query: 127 RHPLLPELK----------------SDPITGELIVETSAVPINSIDIHLCRVESVILGER 186
           RHPLLPEL+                SDP+TGELIVETSAVPINSIDIHLCRVESVILGER
Sbjct: 169 RHPLLPELRSGGFRVTGKMSTLCSLSDPLTGELIVETSAVPINSIDIHLCRVESVILGER 228

Query: 187 IITETSVIQTTQIADGDVCRSITLPIYVILPRLLTCPTVFAGPFSIEFQVYIVITFQSEL 246
           IITETSVIQTTQIADGDVCR+ITLPIYVILPRLLTCPTVFAGPFSIEF+VYIVITFQSEL
Sbjct: 229 IITETSVIQTTQIADGDVCRNITLPIYVILPRLLTCPTVFAGPFSIEFKVYIVITFQSEL 288

Query: 247 SKLHPKTDPRTPRLWVSI 249
           SKLHPKTDPRTPRLW++I
Sbjct: 289 SKLHPKTDPRTPRLWLAI 306

[Close]

BLAST of HG10020729 vs. ExPASy TrEMBL
Match: A0A1S3CMM2 (Down syndrome critical region protein 3 homolog isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502664 PE=3 SV=1)

HSP 1 Score: 443.4 bits (1139), Expect = 6.7e-121
Identity = 229/258 (88.76%), Postives = 239/258 (92.64%), Query Frame = 0


Query: 7   KVRGGSAGVIESVYGVIKPIVIVNRSIEVRPSGKLASGTTEIPFSVILRQPNENLGKFYE 66
           +VRGGSAGVIESVYGVIKPI+IVNRSI VRPSGKLASGT EIPFSVILRQP+ENLGKFYE
Sbjct: 49  QVRGGSAGVIESVYGVIKPILIVNRSILVRPSGKLASGTNEIPFSVILRQPSENLGKFYE 108

Query: 67  TFHGTDINIQYLVTVDISRGYLHKSLTATIEFIVESDTADFLERPLSSEMVIFYITQDTQ 126
           TFHGTDINIQYLVTVDISRGYLHKSL+AT+EFIVESDTADFLERPLSSEMVIFYITQDTQ
Sbjct: 109 TFHGTDINIQYLVTVDISRGYLHKSLSATMEFIVESDTADFLERPLSSEMVIFYITQDTQ 168

Query: 127 RHPLLPELK----------------SDPITGELIVETSAVPINSIDIHLCRVESVILGER 186
           RHPLLPEL+                SDPITGELIVETSAV INSIDIHLCRVESVILGER
Sbjct: 169 RHPLLPELRSGGFRVTGKMSTLCSLSDPITGELIVETSAVLINSIDIHLCRVESVILGER 228

Query: 187 IITETSVIQTTQIADGDVCRSITLPIYVILPRLLTCPTVFAGPFSIEFQVYIVITFQSEL 246
           IITETSVIQTTQIADGDVCR+ITLPIYVILPRLLTCPTVFAGPFSIEF+VYIVITFQSEL
Sbjct: 229 IITETSVIQTTQIADGDVCRNITLPIYVILPRLLTCPTVFAGPFSIEFKVYIVITFQSEL 288

Query: 247 SKLHPKTDPRTPRLWVSI 249
           SKLHPKTDPRTPRLW++I
Sbjct: 289 SKLHPKTDPRTPRLWLAI 306

[Close]

BLAST of HG10020729 vs. ExPASy TrEMBL
Match: A0A6J1E8A3 (Down syndrome critical region protein 3 homolog isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111431725 PE=3 SV=1)

HSP 1 Score: 440.7 bits (1132), Expect = 4.4e-120
Identity = 227/258 (87.98%), Postives = 236/258 (91.47%), Query Frame = 0


Query: 7   KVRGGSAGVIESVYGVIKPIVIVNRSIEVRPSGKLASGTTEIPFSVILRQPNENLGKFYE 66
           +VRGGSAGVIESVYGVIKP+ IVNRSIEVRPSGKL SGTTEIPFSVILRQP+ENLGKFYE
Sbjct: 48  QVRGGSAGVIESVYGVIKPLSIVNRSIEVRPSGKLPSGTTEIPFSVILRQPSENLGKFYE 107

Query: 67  TFHGTDINIQYLVTVDISRGYLHKSLTATIEFIVESDTADFLERPLSSEMVIFYITQDTQ 126
           TFHGTDINIQYLVTV ISRGYLHKSL+ATIEFIVESDTADFLERPLSSEMVIFYITQDTQ
Sbjct: 108 TFHGTDINIQYLVTVGISRGYLHKSLSATIEFIVESDTADFLERPLSSEMVIFYITQDTQ 167

Query: 127 RHPLLPELK----------------SDPITGELIVETSAVPINSIDIHLCRVESVILGER 186
           RHPLLPELK                SDPITGEL VE SAVPI+SIDIHLCRVESVILGER
Sbjct: 168 RHPLLPELKSGGFRVTGKMATLCSLSDPITGELTVEASAVPISSIDIHLCRVESVILGER 227

Query: 187 IITETSVIQTTQIADGDVCRSITLPIYVILPRLLTCPTVFAGPFSIEFQVYIVITFQSEL 246
           IITETSVIQTTQIADGDVCR+ITLPIY ILPRLLTCPTVFAGPFSIEF+VYIVITFQSEL
Sbjct: 228 IITETSVIQTTQIADGDVCRNITLPIYAILPRLLTCPTVFAGPFSIEFKVYIVITFQSEL 287

Query: 247 SKLHPKTDPRTPRLWVSI 249
           SKLHPKTDPRTPRLW++I
Sbjct: 288 SKLHPKTDPRTPRLWLAI 305

[Close]

BLAST of HG10020729 vs. ExPASy TrEMBL
Match: A0A6J1KM64 (Down syndrome critical region protein 3 homolog isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111495832 PE=3 SV=1)

HSP 1 Score: 436.4 bits (1121), Expect = 8.2e-119
Identity = 225/258 (87.21%), Postives = 234/258 (90.70%), Query Frame = 0


Query: 7   KVRGGSAGVIESVYGVIKPIVIVNRSIEVRPSGKLASGTTEIPFSVILRQPNENLGKFYE 66
           +VRGGSAGVIESVYGVIKPI IVNRSIEVRPSGKL SGTTEIPFSVILRQP+ENLGKFYE
Sbjct: 48  QVRGGSAGVIESVYGVIKPISIVNRSIEVRPSGKLPSGTTEIPFSVILRQPDENLGKFYE 107

Query: 67  TFHGTDINIQYLVTVDISRGYLHKSLTATIEFIVESDTADFLERPLSSEMVIFYITQDTQ 126
           TFHGTDINIQYLVTV ISRGYLHKSL+ATIEFIVESDTADFLERPLSSEMVIFYITQDTQ
Sbjct: 108 TFHGTDINIQYLVTVGISRGYLHKSLSATIEFIVESDTADFLERPLSSEMVIFYITQDTQ 167

Query: 127 RHPLLPELK----------------SDPITGELIVETSAVPINSIDIHLCRVESVILGER 186
           RHPLLPELK                SDPITGEL VE SAVPI+SIDIHLCRVESVILGER
Sbjct: 168 RHPLLPELKSGGFRVTGKMATLCSLSDPITGELTVEASAVPISSIDIHLCRVESVILGER 227

Query: 187 IITETSVIQTTQIADGDVCRSITLPIYVILPRLLTCPTVFAGPFSIEFQVYIVITFQSEL 246
           IITETSVIQTTQIADGDVCR+I LPIY ILPRLLTCPTVFAGPFSIEF+VY VITFQSEL
Sbjct: 228 IITETSVIQTTQIADGDVCRNIALPIYAILPRLLTCPTVFAGPFSIEFKVYTVITFQSEL 287

Query: 247 SKLHPKTDPRTPRLWVSI 249
           SK+HPKTDPRTPRLW++I
Sbjct: 288 SKVHPKTDPRTPRLWLAI 305

[Close]

BLAST of HG10020729 vs. ExPASy TrEMBL
Match: A0A6J1C810 (Down syndrome critical region protein 3 homolog isoform X1 OS=Momordica charantia OX=3673 GN=LOC111009075 PE=3 SV=1)

HSP 1 Score: 428.3 bits (1100), Expect = 2.2e-116
Identity = 220/258 (85.27%), Postives = 233/258 (90.31%), Query Frame = 0


Query: 7   KVRGGSAGVIESVYGVIKPIVIVNRSIEVRPSGKLASGTTEIPFSVILRQPNENLGKFYE 66
           ++RGGSAGVIESVYGVIKP  IVN+SIEVRPSGKLASGTTEIPFS+ILRQP+E LG+FYE
Sbjct: 48  QIRGGSAGVIESVYGVIKPTPIVNKSIEVRPSGKLASGTTEIPFSIILRQPSETLGRFYE 107

Query: 67  TFHGTDINIQYLVTVDISRGYLHKSLTATIEFIVESDTADFLERPLSSEMVIFYITQDTQ 126
           TFHGT+INIQYLVTVDISRGYLHKSL+ATIEFIVESDTAD LERPLSSEMVIFYITQDTQ
Sbjct: 108 TFHGTNINIQYLVTVDISRGYLHKSLSATIEFIVESDTADLLERPLSSEMVIFYITQDTQ 167

Query: 127 RHPLLPELK----------------SDPITGELIVETSAVPINSIDIHLCRVESVILGER 186
           RHPLLPELK                SDPITGEL VE SAVPINSIDIHLCRVESVILGER
Sbjct: 168 RHPLLPELKSGGFRVTGKMSTLCSLSDPITGELTVEASAVPINSIDIHLCRVESVILGER 227

Query: 187 IITETSVIQTTQIADGDVCRSITLPIYVILPRLLTCPTVFAGPFSIEFQVYIVITFQSEL 246
           IITETSVIQ+TQIADGDVCR+ITLPIYVI PRLLTCPTVFAGPFSIEF+VYIVITFQS L
Sbjct: 228 IITETSVIQSTQIADGDVCRNITLPIYVIPPRLLTCPTVFAGPFSIEFKVYIVITFQSAL 287

Query: 247 SKLHPKTDPRTPRLWVSI 249
           SKLH KTDPRTPRLW++I
Sbjct: 288 SKLHSKTDPRTPRLWLAI 305

[Close]

BLAST of HG10020729 vs. TAIR 10
Match: AT1G48550.1 (Vacuolar protein sorting-associated protein 26 )

HSP 1 Score: 344.4 bits (882), Expect = 8.2e-95
Identity = 171/259 (66.02%), Postives = 211/259 (81.47%), Query Frame = 0


Query: 7   KVRGGSAGVIESVYGVIKPIVIVNRSIEVRPSGKLASGTTEIPFSVILRQPNENL-GKFY 66
           +VRGGSAGVIES YGVIKPI IV ++IEV+ SGK+  GTTEIPFS+ LR+P E +  KFY
Sbjct: 52  QVRGGSAGVIESFYGVIKPIQIVKKTIEVKSSGKIPPGTTEIPFSLNLREPGEGIVEKFY 111

Query: 67  ETFHGTDINIQYLVTVDISRGYLHKSLTATIEFIVESDTADFLERPLSSEMVIFYITQDT 126
           ETFHGT+INIQYL+T DI RGYLHK L+AT+EFI+ES   D  ERP+  E+VIFYITQDT
Sbjct: 112 ETFHGTNINIQYLLTADIPRGYLHKPLSATMEFIIESGRVDLPERPIPPEIVIFYITQDT 171

Query: 127 QRHPLLPELKS----------------DPITGELIVETSAVPINSIDIHLCRVESVILGE 186
           QRHPLLP++K+                DP++GEL VE S+VPI SIDIHL RVES+I+GE
Sbjct: 172 QRHPLLPDIKTGGFRVTGKLATQCSLQDPLSGELTVEASSVPITSIDIHLLRVESIIVGE 231

Query: 187 RIITETSVIQTTQIADGDVCRSITLPIYVILPRLLTCPTVFAGPFSIEFQVYIVITFQSE 246
           RI+TETS+IQ+TQIADGDVCR++TLPIYV+LPRLL CP+VFAGPFS+EF+V I I+F+S+
Sbjct: 232 RIVTETSLIQSTQIADGDVCRNMTLPIYVLLPRLLMCPSVFAGPFSVEFKVCITISFKSK 291

Query: 247 LSKLHPKTDPRTPRLWVSI 249
           L+K  PK+DP  PRLW+++
Sbjct: 292 LAKAQPKSDPTAPRLWMAL 310

[Close]

BLAST of HG10020729 vs. TAIR 10
Match: AT1G48550.2 (Vacuolar protein sorting-associated protein 26 )

HSP 1 Score: 329.7 bits (844), Expect = 2.1e-90
Identity = 167/259 (64.48%), Postives = 207/259 (79.92%), Query Frame = 0


Query: 7   KVRGGSAGVIESVYGVIKPIVIVNRSIEVRPSGKLASGTTEIPFSVILRQPNENL-GKFY 66
           +VRGGSAGVIES YGVIKPI IV ++IEV+ SGK+  GTTEIPFS+ LR+P E +  KFY
Sbjct: 52  QVRGGSAGVIESFYGVIKPIQIVKKTIEVKSSGKIPPGTTEIPFSLNLREPGEGIVEKFY 111

Query: 67  ETFHGTDINIQYLVTVDISRGYLHKSLTATIEFIVESDTADFLERPLSSEMVIFYITQDT 126
           ETFHGT+INIQ     +I RGYLHK L+AT+EFI+ES   D  ERP+  E+VIFYITQDT
Sbjct: 112 ETFHGTNINIQ---VSNIPRGYLHKPLSATMEFIIESGRVDLPERPIPPEIVIFYITQDT 171

Query: 127 QRHPLLPELKS----------------DPITGELIVETSAVPINSIDIHLCRVESVILGE 186
           QRHPLLP++K+                DP++GEL VE S+VPI SIDIHL RVES+I+GE
Sbjct: 172 QRHPLLPDIKTGGFRVTGKLATQCSLQDPLSGELTVEASSVPITSIDIHLLRVESIIVGE 231

Query: 187 RIITETSVIQTTQIADGDVCRSITLPIYVILPRLLTCPTVFAGPFSIEFQVYIVITFQSE 246
           RI+TETS+IQ+TQIADGDVCR++TLPIYV+LPRLL CP+VFAGPFS+EF+V I I+F+S+
Sbjct: 232 RIVTETSLIQSTQIADGDVCRNMTLPIYVLLPRLLMCPSVFAGPFSVEFKVCITISFKSK 291

Query: 247 LSKLHPKTDPRTPRLWVSI 249
           L+K  PK+DP  PRLW+++
Sbjct: 292 LAKAQPKSDPTAPRLWMAL 307

The following BLAST results are available for this feature:

BLAST of HG10020729 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038895698.1	2.9e-126	89.77	vacuolar protein sorting-associated protein 26C isoform X2 [Benincasa hispida]	[more]
XP_038895697.1	9.6e-122	89.15	vacuolar protein sorting-associated protein 26C isoform X1 [Benincasa hispida]	[more]
XP_004137506.1	1.1e-120	88.37	vacuolar protein sorting-associated protein 26C [Cucumis sativus] >KGN64179.1 hy...	[more]
XP_008464938.1	1.4e-120	88.76	PREDICTED: Down syndrome critical region protein 3 homolog isoform X1 [Cucumis m...	[more]
XP_022924207.1	9.0e-120	87.98	Down syndrome critical region protein 3 homolog isoform X1 [Cucurbita moschata] ...	[more]

BLAST of HG10020729 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5RF33	2.6e-37	41.05	Vacuolar protein sorting-associated protein 26C OS=Pongo abelii OX=9601 GN=VPS26...	[more]
O14972	4.5e-37	40.71	Vacuolar protein sorting-associated protein 26C OS=Homo sapiens OX=9606 GN=VPS26...	[more]
O35075	4.9e-36	38.46	Vacuolar protein sorting-associated protein 26C OS=Mus musculus OX=10090 GN=Vps2...	[more]
Q54DI8	6.9e-30	34.45	Vacuolar protein sorting-associated protein 26C OS=Dictyostelium discoideum OX=4...	[more]

BLAST of HG10020729 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LT45	5.2e-121	88.37	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042860 PE=3 SV=1	[more]
A0A1S3CMM2	6.7e-121	88.76	Down syndrome critical region protein 3 homolog isoform X1 OS=Cucumis melo OX=36...	[more]
A0A6J1E8A3	4.4e-120	87.98	Down syndrome critical region protein 3 homolog isoform X1 OS=Cucurbita moschata...	[more]
A0A6J1KM64	8.2e-119	87.21	Down syndrome critical region protein 3 homolog isoform X1 OS=Cucurbita maxima O...	[more]
A0A6J1C810	2.2e-116	85.27	Down syndrome critical region protein 3 homolog isoform X1 OS=Momordica charanti...	[more]

BLAST of HG10020729 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G48550.1	8.2e-95	66.02	Vacuolar protein sorting-associated protein 26	[more]
AT1G48550.2	2.1e-90	64.48	Vacuolar protein sorting-associated protein 26	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014752	Arrestin-like, C-terminal	GENE3D	2.60.40.640		coord: 8..104 e-value: 1.8E-16 score: 61.9
IPR014752	Arrestin-like, C-terminal	GENE3D	2.60.40.640		coord: 132..234 e-value: 4.4E-22 score: 80.2
IPR028934	Vacuolar protein sorting protein 26 related	PFAM	PF03643	Vps26	coord: 13..225 e-value: 5.1E-26 score: 91.3
IPR028934	Vacuolar protein sorting protein 26 related	PANTHER	PTHR12233	VACUOLAR PROTEIN SORTING 26 RELATED	coord: 7..230
None	No IPR available	PANTHER	PTHR12233:SF2	VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 26C	coord: 7..230

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10020729.1	HG10020729.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0042147	retrograde transport, endosome to Golgi
biological_process	GO:0048768	root hair cell tip growth
cellular_component	GO:0005829	cytosol
cellular_component	GO:0010008	endosome membrane
cellular_component	GO:0030904	retromer complex