HG10020619 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10020619
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	transcription factor TCP13-like
Location	Chr05: 986317 .. 986898 (+)
RNA-Seq Expression	HG10020619
Synteny	HG10020619

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGGCAAAAGGAAGAAGGCATTTCTAAGAGGCAATCCAAGAATTTTTAGAGTTTCATCTTTGTTTGGAGGAAAAGATAGGCACAGCAAAGTTTGTACAATAAAAGGCTTAAGAGACAGAAGGATTAGGCTTTCAGTTCCAACTGCAATTCAACTTTACGATTTGCAAAACAGACTTGGCCTTAGCCAACCCAGCAAAGTAATAGATTGGCTTATTGATGTCACAAGACTTGAAATTGATAAGCTCCCACCACTCCATTTTCCAAAAGATTTTGACCCAAATGCCTCAATTCTTCATCATTCTTCATTGCTTCTTCCTCAGATTCCCCATTTTCATATTGCAGATGCTGCACTGAAGGCCAAAAATGAAGAAACTGATCACGGGCTTTTGCTTCATAAGTTGTCTTCTTTATCTTCTCTTCAAGTTCAAACCAATGCCATTAATGAAAACTGTTGCCATTTTGAACCTCCAAGCTTTCCATTACCATTAATGGATCAGACCAATCCAGCTTCTTTTTCCTTCTGTCCCTCGACGATGCCGTCGGAAGTTTCTTCTCATCTTCCCAACGGCAGAAATTAA

mRNA sequence

ATGGAGGGCAAAAGGAAGAAGGCATTTCTAAGAGGCAATCCAAGAATTTTTAGAGTTTCATCTTTGTTTGGAGGAAAAGATAGGCACAGCAAAGTTTGTACAATAAAAGGCTTAAGAGACAGAAGGATTAGGCTTTCAGTTCCAACTGCAATTCAACTTTACGATTTGCAAAACAGACTTGGCCTTAGCCAACCCAGCAAAGTAATAGATTGGCTTATTGATGTCACAAGACTTGAAATTGATAAGCTCCCACCACTCCATTTTCCAAAAGATTTTGACCCAAATGCCTCAATTCTTCATCATTCTTCATTGCTTCTTCCTCAGATTCCCCATTTTCATATTGCAGATGCTGCACTGAAGGCCAAAAATGAAGAAACTGATCACGGGCTTTTGCTTCATAAGTTGTCTTCTTTATCTTCTCTTCAAGTTCAAACCAATGCCATTAATGAAAACTGTTGCCATTTTGAACCTCCAAGCTTTCCATTACCATTAATGGATCAGACCAATCCAGCTTCTTTTTCCTTCTGTCCCTCGACGATGCCGTCGGAAGTTTCTTCTCATCTTCCCAACGGCAGAAATTAA

Coding sequence (CDS)

ATGGAGGGCAAAAGGAAGAAGGCATTTCTAAGAGGCAATCCAAGAATTTTTAGAGTTTCATCTTTGTTTGGAGGAAAAGATAGGCACAGCAAAGTTTGTACAATAAAAGGCTTAAGAGACAGAAGGATTAGGCTTTCAGTTCCAACTGCAATTCAACTTTACGATTTGCAAAACAGACTTGGCCTTAGCCAACCCAGCAAAGTAATAGATTGGCTTATTGATGTCACAAGACTTGAAATTGATAAGCTCCCACCACTCCATTTTCCAAAAGATTTTGACCCAAATGCCTCAATTCTTCATCATTCTTCATTGCTTCTTCCTCAGATTCCCCATTTTCATATTGCAGATGCTGCACTGAAGGCCAAAAATGAAGAAACTGATCACGGGCTTTTGCTTCATAAGTTGTCTTCTTTATCTTCTCTTCAAGTTCAAACCAATGCCATTAATGAAAACTGTTGCCATTTTGAACCTCCAAGCTTTCCATTACCATTAATGGATCAGACCAATCCAGCTTCTTTTTCCTTCTGTCCCTCGACGATGCCGTCGGAAGTTTCTTCTCATCTTCCCAACGGCAGAAATTAA

Protein sequence

MEGKRKKAFLRGNPRIFRVSSLFGGKDRHSKVCTIKGLRDRRIRLSVPTAIQLYDLQNRLGLSQPSKVIDWLIDVTRLEIDKLPPLHFPKDFDPNASILHHSSLLLPQIPHFHIADAALKAKNEETDHGLLLHKLSSLSSLQVQTNAINENCCHFEPPSFPLPLMDQTNPASFSFCPSTMPSEVSSHLPNGRN

Homology

[Close]

BLAST of HG10020619 vs. NCBI nr
Match: XP_038895251.1 (transcription factor PCF6 [Benincasa hispida])

HSP 1 Score: 362.5 bits (929), Expect = 2.3e-96
Identity = 175/193 (90.67%), Postives = 182/193 (94.30%), Query Frame = 0


Query: 1   MEGKRKKAFLRGNPRIFRVSSLFGGKDRHSKVCTIKGLRDRRIRLSVPTAIQLYDLQNRL 60
           MEGKRKKAFLRGNPRI RVSSLFGGKDRHSKVCT+KGLRDRRIRLSVPTAIQLYDLQN+L
Sbjct: 17  MEGKRKKAFLRGNPRILRVSSLFGGKDRHSKVCTVKGLRDRRIRLSVPTAIQLYDLQNKL 76

Query: 61  GLSQPSKVIDWLIDVTRLEIDKLPPLHFPKDFDPNASILHHSSLLLPQIPHFHIADAALK 120
           GLSQPSKVIDWLIDVTR EIDKLPPLHFPKDFDPNASILHHSSL LPQIPHF IADAA+ 
Sbjct: 77  GLSQPSKVIDWLIDVTRFEIDKLPPLHFPKDFDPNASILHHSSLFLPQIPHFDIADAAVT 136

Query: 121 AKNEETDHGLLLHKLSSLSSLQVQTNAINENCCHFEPPSFPLPLMDQTNPASFSFCPSTM 180
           AKNEETD  LLLHKLSSLS+LQVQTNAI ENCCHF+PPSFP PLMDQT+PASFSFCP TM
Sbjct: 137 AKNEETDQRLLLHKLSSLSALQVQTNAIKENCCHFQPPSFPFPLMDQTSPASFSFCPLTM 196

Query: 181 PSEVSSHLPNGRN 194
           PSEVSSHLP+ RN
Sbjct: 197 PSEVSSHLPDDRN 209

[Close]

BLAST of HG10020619 vs. NCBI nr
Match: XP_023001048.1 (transcription factor TCP13-like [Cucurbita maxima])

HSP 1 Score: 285.8 bits (730), Expect = 2.8e-73
Identity = 154/212 (72.64%), Postives = 163/212 (76.89%), Query Frame = 0


Query: 1   MEGKRKKA------FLRGNPRIFRVSSLFGGKDRHSKVCTIKGLRDRRIRLSVPTAIQLY 60
           MEGKRKK       FLRGNPRIFRVS LFGGKDRHSKVCT+KGLRDRRIRLS PTAIQLY
Sbjct: 24  MEGKRKKGPSRQGPFLRGNPRIFRVSPLFGGKDRHSKVCTMKGLRDRRIRLSAPTAIQLY 83

Query: 61  DLQNRLGLSQPSKVIDWLIDVTRLEIDKLPPLHFPKDFDPNASILHHSSLLLPQIPHFHI 120
           DLQNRLGLSQPSKVIDWL+DVTR +IDKLPPLHFPKDFDPNAS LH          HF I
Sbjct: 84  DLQNRLGLSQPSKVIDWLMDVTRFDIDKLPPLHFPKDFDPNASFLH----------HFDI 143

Query: 121 ADAALKAKNEETDHGLLLHKLS------SLSSLQVQTNAINENCCHFEPPSFPLPLMDQT 180
           ADAA KAK+EET   LLL K S      S S+LQ+QTNA+ ENCCHF+PPSFP PLMDQ 
Sbjct: 144 ADAAAKAKHEETGM-LLLQKSSPSPNHASFSALQLQTNAMTENCCHFDPPSFPFPLMDQA 203

Query: 181 NPASFS-------FCPSTMPSEVSSHLPNGRN 194
           NPASFS       F P TMP EVSS+LPNG N
Sbjct: 204 NPASFSSPSEQLLFRPLTMPPEVSSYLPNGGN 224

[Close]

BLAST of HG10020619 vs. NCBI nr
Match: KAG6584403.1 (Transcription factor TCP5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 284.3 bits (726), Expect = 8.0e-73
Identity = 153/212 (72.17%), Postives = 163/212 (76.89%), Query Frame = 0


Query: 1   MEGKRKKA------FLRGNPRIFRVSSLFGGKDRHSKVCTIKGLRDRRIRLSVPTAIQLY 60
           MEGKRKK       FLRGNPRIFRVS LFGGKDRHSKVCT+KGLRDRRIRLS PTAIQLY
Sbjct: 24  MEGKRKKGPSRQGPFLRGNPRIFRVSPLFGGKDRHSKVCTMKGLRDRRIRLSAPTAIQLY 83

Query: 61  DLQNRLGLSQPSKVIDWLIDVTRLEIDKLPPLHFPKDFDPNASILHHSSLLLPQIPHFHI 120
           DLQNRLGLSQPSKVIDWLIDVTR +IDKLPPLHFPKDFDPNAS LH          H  I
Sbjct: 84  DLQNRLGLSQPSKVIDWLIDVTRFDIDKLPPLHFPKDFDPNASFLH----------HLDI 143

Query: 121 ADAALKAKNEETDHGLLLHKLS------SLSSLQVQTNAINENCCHFEPPSFPLPLMDQT 180
           +DAA KAK+EET   LLL KLS      S S+LQ++TNA+ ENCCHF+PPSFP PLMDQ 
Sbjct: 144 SDAAAKAKHEETGM-LLLQKLSPSPNHASFSALQLRTNAMTENCCHFDPPSFPFPLMDQA 203

Query: 181 NPASFS-------FCPSTMPSEVSSHLPNGRN 194
           NPASFS       F P TMP EVSS+LPNG N
Sbjct: 204 NPASFSSPSEQLLFRPLTMPPEVSSYLPNGGN 224

[Close]

BLAST of HG10020619 vs. NCBI nr
Match: XP_023519980.1 (transcription factor TCP13-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 284.3 bits (726), Expect = 8.0e-73
Identity = 153/212 (72.17%), Postives = 162/212 (76.42%), Query Frame = 0


Query: 1   MEGKRKKA------FLRGNPRIFRVSSLFGGKDRHSKVCTIKGLRDRRIRLSVPTAIQLY 60
           MEGKRKK       FLRGNPRIFRVS LFGGKDRHSKVCT+KGLRDRRIRLS PTAIQLY
Sbjct: 24  MEGKRKKGPSRQGPFLRGNPRIFRVSPLFGGKDRHSKVCTMKGLRDRRIRLSAPTAIQLY 83

Query: 61  DLQNRLGLSQPSKVIDWLIDVTRLEIDKLPPLHFPKDFDPNASILHHSSLLLPQIPHFHI 120
           DLQNRLGLSQPSKVIDWLIDVTR +IDKLPPLHFPKDFDPNAS LH          H  I
Sbjct: 84  DLQNRLGLSQPSKVIDWLIDVTRFDIDKLPPLHFPKDFDPNASFLH----------HLDI 143

Query: 121 ADAALKAKNEETDHGLLLHKLS------SLSSLQVQTNAINENCCHFEPPSFPLPLMDQT 180
           ADA  KAK+EET   LLL KLS      S S+LQ+QTNA+ ENCCHF+PPSFP PLMDQ 
Sbjct: 144 ADATAKAKHEETGM-LLLQKLSPSPNHASFSALQLQTNAMTENCCHFDPPSFPFPLMDQA 203

Query: 181 NPASFS-------FCPSTMPSEVSSHLPNGRN 194
           NPASFS       F P T+P EVSS+LPNG N
Sbjct: 204 NPASFSSPSEQLLFRPMTVPPEVSSYLPNGGN 224

[Close]

BLAST of HG10020619 vs. NCBI nr
Match: KAG7019990.1 (Transcription factor TCP5, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 282.7 bits (722), Expect = 2.3e-72
Identity = 152/212 (71.70%), Postives = 163/212 (76.89%), Query Frame = 0


Query: 1   MEGKRKKA------FLRGNPRIFRVSSLFGGKDRHSKVCTIKGLRDRRIRLSVPTAIQLY 60
           MEGKRKK       FLRGNPRIFRVS LFGGKDRHSKVCT+KGLRDRRIRLS PTAIQLY
Sbjct: 147 MEGKRKKGPSRQGPFLRGNPRIFRVSPLFGGKDRHSKVCTMKGLRDRRIRLSAPTAIQLY 206

Query: 61  DLQNRLGLSQPSKVIDWLIDVTRLEIDKLPPLHFPKDFDPNASILHHSSLLLPQIPHFHI 120
           DLQNRLGLS+PSKVIDWLIDVTR +IDKLPPLHFPKDFDPNAS LH          H  I
Sbjct: 207 DLQNRLGLSRPSKVIDWLIDVTRFDIDKLPPLHFPKDFDPNASFLH----------HLDI 266

Query: 121 ADAALKAKNEETDHGLLLHKLS------SLSSLQVQTNAINENCCHFEPPSFPLPLMDQT 180
           +DAA KAK+EET   LLL KLS      S S+LQ++TNA+ ENCCHF+PPSFP PLMDQ 
Sbjct: 267 SDAAAKAKHEETGM-LLLQKLSPSPNHASFSALQLRTNAMTENCCHFDPPSFPFPLMDQA 326

Query: 181 NPASFS-------FCPSTMPSEVSSHLPNGRN 194
           NPASFS       F P TMP EVSS+LPNG N
Sbjct: 327 NPASFSSPSEQLLFRPLTMPPEVSSYLPNGGN 347

[Close]

BLAST of HG10020619 vs. ExPASy Swiss-Prot
Match: Q9FME3 (Transcription factor TCP5 OS=Arabidopsis thaliana OX=3702 GN=TCP5 PE=1 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.2e-31
Identity = 63/81 (77.78%), Postives = 72/81 (88.89%), Query Frame = 0


Query: 13  NPRIFRVSSLFGGKDRHSKVCTIKGLRDRRIRLSVPTAIQLYDLQNRLGLSQPSKVIDWL 72
           NPRI RVS  FGGKDRHSKVCT++GLRDRRIRLSVPTAIQLYDLQ+RLGLSQPSKVIDWL
Sbjct: 51  NPRIVRVSRTFGGKDRHSKVCTVRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVIDWL 110

Query: 73  IDVTRLEIDKLPPLHFPKDFD 94
           ++  + ++DKLPPL FP  F+
Sbjct: 111 LEAAKDDVDKLPPLQFPHGFN 131

[Close]

BLAST of HG10020619 vs. ExPASy Swiss-Prot
Match: Q9LEZ9 (Transcription factor TCP17 OS=Arabidopsis thaliana OX=3702 GN=TCP17 PE=1 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 5.1e-30
Identity = 65/93 (69.89%), Postives = 75/93 (80.65%), Query Frame = 0


Query: 13  NPRIFRVSSLFGGKDRHSKVCTIKGLRDRRIRLSVPTAIQLYDLQNRLGLSQPSKVIDWL 72
           NPRI RVS  FGGKDRHSKVCT++GLRDRRIRLSV TAIQ+YDLQ RLGLSQPSKVIDWL
Sbjct: 21  NPRIVRVSRAFGGKDRHSKVCTVRGLRDRRIRLSVMTAIQVYDLQERLGLSQPSKVIDWL 80

Query: 73  IDVTRLEIDKLPPLHFPKDF---DPNASILHHS 103
           ++V + ++D LPPL FP  F   +PN + L  S
Sbjct: 81  LEVAKNDVDLLPPLQFPPGFHQLNPNLTGLGES 113

[Close]

BLAST of HG10020619 vs. ExPASy Swiss-Prot
Match: Q9S7W5 (Transcription factor TCP13 OS=Arabidopsis thaliana OX=3702 GN=TCP13 PE=1 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 7.4e-29
Identity = 63/94 (67.02%), Postives = 73/94 (77.66%), Query Frame = 0


Query: 13  NPRIFRVSSLFGGKDRHSKVCTIKGLRDRRIRLSVPTAIQLYDLQNRLGLSQPSKVIDWL 72
           +PRI RVS  FGGKDRHSKVCT++GLRDRR+RLSVPTAIQLYDLQ RLG+ QPSK +DWL
Sbjct: 62  DPRIVRVSRAFGGKDRHSKVCTLRGLRDRRVRLSVPTAIQLYDLQERLGVDQPSKAVDWL 121

Query: 73  IDVTRLEIDKLPPLHFPKDFDPNASIL-HHSSLL 106
           +D  + EID+LPPL    +   N SI  HH S L
Sbjct: 122 LDAAKEEIDELPPLPISPE---NFSIFNHHQSFL 152

[Close]

BLAST of HG10020619 vs. ExPASy Swiss-Prot
Match: A2XMN1 (Transcription factor PCF6 OS=Oryza sativa subsp. indica OX=39946 GN=PCF6 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.7e-20
Identity = 62/136 (45.59%), Postives = 75/136 (55.15%), Query Frame = 0


Query: 15  RIFRVSSLFGGKDRHSKVCTIKGLRDRRIRLSVPTAIQLYDLQNRLGLSQPSKVIDWLID 74
           RI+RV +  GGKDRHSKV T KG+RDRR+RLSV TAIQ YDLQ+RLG  QPSK I+WLI+
Sbjct: 43  RIYRVRAT-GGKDRHSKVYTAKGIRDRRVRLSVATAIQFYDLQDRLGFDQPSKAIEWLIN 102

Query: 75  VTRLEIDKLPPLHFPKDFDPNASILHHSSLLLPQIPHFHIADAALKAKNEETDHGLLLHK 134
                ID LP L      DP A            IPH   ADAA   +  +     L +K
Sbjct: 103 AASPAIDTLPSL------DPAA---------FAAIPHAAAADAAPTRRRSQQQQQQLSNK 162

Query: 135 LSSLSSLQVQTNAINE 151
               S+ +    +  E
Sbjct: 163 SGCSSTSETSKGSDKE 162

[Close]

BLAST of HG10020619 vs. ExPASy Swiss-Prot
Match: Q93V43 (Transcription factor TCP2 OS=Arabidopsis thaliana OX=3702 GN=TCP2 PE=1 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 4.8e-20
Identity = 50/80 (62.50%), Postives = 56/80 (70.00%), Query Frame = 0


Query: 15  RIFRVSSLFGGKDRHSKVCTIKGLRDRRIRLSVPTAIQLYDLQNRLGLSQPSKVIDWLID 74
           RI RVS   GGKDRHSKV T KG RDRR+RLSV TA+Q YDLQ+RLG  QPSK ++WLI 
Sbjct: 32  RIIRVSRASGGKDRHSKVLTSKGPRDRRVRLSVSTALQFYDLQDRLGYDQPSKAVEWLIK 91

Query: 75  VTRLEIDKLPPL---HFPKD 92
                I +LP L   HFP D
Sbjct: 92  AAEDSISELPSLNNTHFPTD 111

[Close]

BLAST of HG10020619 vs. ExPASy TrEMBL
Match: A0A6J1KPD9 (transcription factor TCP13-like OS=Cucurbita maxima OX=3661 GN=LOC111495302 PE=4 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 1.3e-73
Identity = 154/212 (72.64%), Postives = 163/212 (76.89%), Query Frame = 0


Query: 1   MEGKRKKA------FLRGNPRIFRVSSLFGGKDRHSKVCTIKGLRDRRIRLSVPTAIQLY 60
           MEGKRKK       FLRGNPRIFRVS LFGGKDRHSKVCT+KGLRDRRIRLS PTAIQLY
Sbjct: 24  MEGKRKKGPSRQGPFLRGNPRIFRVSPLFGGKDRHSKVCTMKGLRDRRIRLSAPTAIQLY 83

Query: 61  DLQNRLGLSQPSKVIDWLIDVTRLEIDKLPPLHFPKDFDPNASILHHSSLLLPQIPHFHI 120
           DLQNRLGLSQPSKVIDWL+DVTR +IDKLPPLHFPKDFDPNAS LH          HF I
Sbjct: 84  DLQNRLGLSQPSKVIDWLMDVTRFDIDKLPPLHFPKDFDPNASFLH----------HFDI 143

Query: 121 ADAALKAKNEETDHGLLLHKLS------SLSSLQVQTNAINENCCHFEPPSFPLPLMDQT 180
           ADAA KAK+EET   LLL K S      S S+LQ+QTNA+ ENCCHF+PPSFP PLMDQ 
Sbjct: 144 ADAAAKAKHEETGM-LLLQKSSPSPNHASFSALQLQTNAMTENCCHFDPPSFPFPLMDQA 203

Query: 181 NPASFS-------FCPSTMPSEVSSHLPNGRN 194
           NPASFS       F P TMP EVSS+LPNG N
Sbjct: 204 NPASFSSPSEQLLFRPLTMPPEVSSYLPNGGN 224

[Close]

BLAST of HG10020619 vs. ExPASy TrEMBL
Match: A0A6J1E7C6 (transcription factor PCF8-like OS=Cucurbita moschata OX=3662 GN=LOC111431389 PE=4 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 5.6e-72
Identity = 153/212 (72.17%), Postives = 162/212 (76.42%), Query Frame = 0


Query: 1   MEGKRKKA------FLRGNPRIFRVSSLFGGKDRHSKVCTIKGLRDRRIRLSVPTAIQLY 60
           MEGKRKK       FLRGNPRIFRVS LFGGKDRHSKVCT+KGLRDRRIRLS PTAIQLY
Sbjct: 24  MEGKRKKGPSRQGPFLRGNPRIFRVSPLFGGKDRHSKVCTMKGLRDRRIRLSAPTAIQLY 83

Query: 61  DLQNRLGLSQPSKVIDWLIDVTRLEIDKLPPLHFPKDFDPNASILHHSSLLLPQIPHFHI 120
           DLQNRLGLSQPSKVIDWLIDVTR++IDKLPPLHFPKDFDPNAS L           H  I
Sbjct: 84  DLQNRLGLSQPSKVIDWLIDVTRVDIDKLPPLHFPKDFDPNASFL-----------HLDI 143

Query: 121 ADAALKAKNEETDHGLLLHKLS------SLSSLQVQTNAINENCCHFEPPSFPLPLMDQT 180
           ADAA KAK+EET   LLL KLS      S S+LQ+QTNA+ ENCCHF+PPSFP PLMDQ 
Sbjct: 144 ADAAAKAKHEETGM-LLLQKLSPSPNNASFSALQLQTNAMTENCCHFDPPSFPFPLMDQA 203

Query: 181 NPASFS-------FCPSTMPSEVSSHLPNGRN 194
           NPASFS       F P TMP EVSS+L NG N
Sbjct: 204 NPASFSSPSEQLLFRPLTMPPEVSSYLRNGGN 223

[Close]

BLAST of HG10020619 vs. ExPASy TrEMBL
Match: A0A5D3BIQ9 (Transcription factor TCP5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G001450 PE=4 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 1.5e-61
Identity = 133/184 (72.28%), Postives = 138/184 (75.00%), Query Frame = 0


Query: 1   MEGKRKKA--------FLRGNPRIFRVSSLFGGKDRHSKVCTIKGLRDRRIRLSVPTAIQ 60
           MEGKRKKA        FLRGNPRIFRVS  FGGKDRHSKVCTIKGLRDRRIRLS+PTAIQ
Sbjct: 17  MEGKRKKARTCSRQGQFLRGNPRIFRVSPFFGGKDRHSKVCTIKGLRDRRIRLSIPTAIQ 76

Query: 61  LYDLQNRLGLSQPSKVIDWLIDVTRLEIDKLPPLHFPKDFDPNASILHHSSLLLPQIPHF 120
           LYDLQN+LGLSQPSKVIDWLIDVTR EIDKLPPLHFPKDFDPNASILHHS +        
Sbjct: 77  LYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPLHFPKDFDPNASILHHSDI-------- 136

Query: 121 HIADAAL-KAKNEETDHGLLLHKLSSLSSLQVQTNAINENCCHFEPPSFPLPLMDQTNPA 176
              DAAL KAKNEETD  LL           VQTN IN +  HFEPPSFP P M QTN +
Sbjct: 137 -GGDAALMKAKNEETDQTLL-----------VQTNDINGDSSHFEPPSFPFPFMYQTNSS 180

[Close]

BLAST of HG10020619 vs. ExPASy TrEMBL
Match: A0A1S3BEN2 (transcription factor TCP5 OS=Cucumis melo OX=3656 GN=LOC103488791 PE=4 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 1.5e-61
Identity = 133/184 (72.28%), Postives = 138/184 (75.00%), Query Frame = 0


Query: 1   MEGKRKKA--------FLRGNPRIFRVSSLFGGKDRHSKVCTIKGLRDRRIRLSVPTAIQ 60
           MEGKRKKA        FLRGNPRIFRVS  FGGKDRHSKVCTIKGLRDRRIRLS+PTAIQ
Sbjct: 17  MEGKRKKARTCSRQGQFLRGNPRIFRVSPFFGGKDRHSKVCTIKGLRDRRIRLSIPTAIQ 76

Query: 61  LYDLQNRLGLSQPSKVIDWLIDVTRLEIDKLPPLHFPKDFDPNASILHHSSLLLPQIPHF 120
           LYDLQN+LGLSQPSKVIDWLIDVTR EIDKLPPLHFPKDFDPNASILHHS +        
Sbjct: 77  LYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPLHFPKDFDPNASILHHSDI-------- 136

Query: 121 HIADAAL-KAKNEETDHGLLLHKLSSLSSLQVQTNAINENCCHFEPPSFPLPLMDQTNPA 176
              DAAL KAKNEETD  LL           VQTN IN +  HFEPPSFP P M QTN +
Sbjct: 137 -GGDAALMKAKNEETDQTLL-----------VQTNDINGDSSHFEPPSFPFPFMYQTNSS 180

[Close]

BLAST of HG10020619 vs. ExPASy TrEMBL
Match: A0A0A0LTI3 (TCP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G039270 PE=4 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 2.0e-61
Identity = 132/183 (72.13%), Postives = 136/183 (74.32%), Query Frame = 0


Query: 2   EGKRKKA--------FLRGNPRIFRVSSLFGGKDRHSKVCTIKGLRDRRIRLSVPTAIQL 61
           +GK KKA        FLRGNPRIFRVS  FGGKDRHSKVCTIKGLRDRRIRLS+PTAIQL
Sbjct: 18  KGKMKKARTCSRQGQFLRGNPRIFRVSPFFGGKDRHSKVCTIKGLRDRRIRLSIPTAIQL 77

Query: 62  YDLQNRLGLSQPSKVIDWLIDVTRLEIDKLPPLHFPKDFDPNASILHHSSLLLPQIPHFH 121
           YDLQN+LGLSQPSKVIDWLIDVTR EIDKLPPL FPKDFDPNASILHHS           
Sbjct: 78  YDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPLPFPKDFDPNASILHHSD---------- 137

Query: 122 IADAALKAKNEETDHGLLLHKLSSLSSLQVQTNAINENCCHFEPPSFPLPLM-DQTNPAS 176
           I DAA KAKNEETDH LL           VQTN IN  C HFEPP+FP P M DQTN A 
Sbjct: 138 IGDAAFKAKNEETDHTLL-----------VQTNDINGVCSHFEPPTFPFPFMDDQTNSAP 179

[Close]

BLAST of HG10020619 vs. TAIR 10
Match: AT5G60970.1 (TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 )

HSP 1 Score: 137.9 bits (346), Expect = 8.7e-33
Identity = 63/81 (77.78%), Postives = 72/81 (88.89%), Query Frame = 0


Query: 13  NPRIFRVSSLFGGKDRHSKVCTIKGLRDRRIRLSVPTAIQLYDLQNRLGLSQPSKVIDWL 72
           NPRI RVS  FGGKDRHSKVCT++GLRDRRIRLSVPTAIQLYDLQ+RLGLSQPSKVIDWL
Sbjct: 51  NPRIVRVSRTFGGKDRHSKVCTVRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVIDWL 110

Query: 73  IDVTRLEIDKLPPLHFPKDFD 94
           ++  + ++DKLPPL FP  F+
Sbjct: 111 LEAAKDDVDKLPPLQFPHGFN 131

[Close]

BLAST of HG10020619 vs. TAIR 10
Match: AT5G08070.1 (TCP domain protein 17 )

HSP 1 Score: 132.5 bits (332), Expect = 3.6e-31
Identity = 65/93 (69.89%), Postives = 75/93 (80.65%), Query Frame = 0


Query: 13  NPRIFRVSSLFGGKDRHSKVCTIKGLRDRRIRLSVPTAIQLYDLQNRLGLSQPSKVIDWL 72
           NPRI RVS  FGGKDRHSKVCT++GLRDRRIRLSV TAIQ+YDLQ RLGLSQPSKVIDWL
Sbjct: 21  NPRIVRVSRAFGGKDRHSKVCTVRGLRDRRIRLSVMTAIQVYDLQERLGLSQPSKVIDWL 80

Query: 73  IDVTRLEIDKLPPLHFPKDF---DPNASILHHS 103
           ++V + ++D LPPL FP  F   +PN + L  S
Sbjct: 81  LEVAKNDVDLLPPLQFPPGFHQLNPNLTGLGES 113

[Close]

BLAST of HG10020619 vs. TAIR 10
Match: AT3G02150.1 (plastid transcription factor 1 )

HSP 1 Score: 128.6 bits (322), Expect = 5.3e-30
Identity = 63/94 (67.02%), Postives = 73/94 (77.66%), Query Frame = 0


Query: 13  NPRIFRVSSLFGGKDRHSKVCTIKGLRDRRIRLSVPTAIQLYDLQNRLGLSQPSKVIDWL 72
           +PRI RVS  FGGKDRHSKVCT++GLRDRR+RLSVPTAIQLYDLQ RLG+ QPSK +DWL
Sbjct: 62  DPRIVRVSRAFGGKDRHSKVCTLRGLRDRRVRLSVPTAIQLYDLQERLGVDQPSKAVDWL 121

Query: 73  IDVTRLEIDKLPPLHFPKDFDPNASIL-HHSSLL 106
           +D  + EID+LPPL    +   N SI  HH S L
Sbjct: 122 LDAAKEEIDELPPLPISPE---NFSIFNHHQSFL 152

[Close]

BLAST of HG10020619 vs. TAIR 10
Match: AT3G02150.2 (plastid transcription factor 1 )

HSP 1 Score: 128.6 bits (322), Expect = 5.3e-30
Identity = 63/94 (67.02%), Postives = 73/94 (77.66%), Query Frame = 0


Query: 13  NPRIFRVSSLFGGKDRHSKVCTIKGLRDRRIRLSVPTAIQLYDLQNRLGLSQPSKVIDWL 72
           +PRI RVS  FGGKDRHSKVCT++GLRDRR+RLSVPTAIQLYDLQ RLG+ QPSK +DWL
Sbjct: 62  DPRIVRVSRAFGGKDRHSKVCTLRGLRDRRVRLSVPTAIQLYDLQERLGVDQPSKAVDWL 121

Query: 73  IDVTRLEIDKLPPLHFPKDFDPNASIL-HHSSLL 106
           +D  + EID+LPPL    +   N SI  HH S L
Sbjct: 122 LDAAKEEIDELPPLPISPE---NFSIFNHHQSFL 152

[Close]

BLAST of HG10020619 vs. TAIR 10
Match: AT4G18390.1 (TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 )

HSP 1 Score: 99.4 bits (246), Expect = 3.4e-21
Identity = 50/80 (62.50%), Postives = 56/80 (70.00%), Query Frame = 0


Query: 15  RIFRVSSLFGGKDRHSKVCTIKGLRDRRIRLSVPTAIQLYDLQNRLGLSQPSKVIDWLID 74
           RI RVS   GGKDRHSKV T KG RDRR+RLSV TA+Q YDLQ+RLG  QPSK ++WLI 
Sbjct: 32  RIIRVSRASGGKDRHSKVLTSKGPRDRRVRLSVSTALQFYDLQDRLGYDQPSKAVEWLIK 91

Query: 75  VTRLEIDKLPPL---HFPKD 92
                I +LP L   HFP D
Sbjct: 92  AAEDSISELPSLNNTHFPTD 111

The following BLAST results are available for this feature:

BLAST of HG10020619 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038895251.1	2.3e-96	90.67	transcription factor PCF6 [Benincasa hispida]	[more]
XP_023001048.1	2.8e-73	72.64	transcription factor TCP13-like [Cucurbita maxima]	[more]
KAG6584403.1	8.0e-73	72.17	Transcription factor TCP5, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023519980.1	8.0e-73	72.17	transcription factor TCP13-like [Cucurbita pepo subsp. pepo]	[more]
KAG7019990.1	2.3e-72	71.70	Transcription factor TCP5, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of HG10020619 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FME3	1.2e-31	77.78	Transcription factor TCP5 OS=Arabidopsis thaliana OX=3702 GN=TCP5 PE=1 SV=1	[more]
Q9LEZ9	5.1e-30	69.89	Transcription factor TCP17 OS=Arabidopsis thaliana OX=3702 GN=TCP17 PE=1 SV=1	[more]
Q9S7W5	7.4e-29	67.02	Transcription factor TCP13 OS=Arabidopsis thaliana OX=3702 GN=TCP13 PE=1 SV=1	[more]
A2XMN1	1.7e-20	45.59	Transcription factor PCF6 OS=Oryza sativa subsp. indica OX=39946 GN=PCF6 PE=4 SV...	[more]
Q93V43	4.8e-20	62.50	Transcription factor TCP2 OS=Arabidopsis thaliana OX=3702 GN=TCP2 PE=1 SV=1	[more]

BLAST of HG10020619 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KPD9	1.3e-73	72.64	transcription factor TCP13-like OS=Cucurbita maxima OX=3661 GN=LOC111495302 PE=4...	[more]
A0A6J1E7C6	5.6e-72	72.17	transcription factor PCF8-like OS=Cucurbita moschata OX=3662 GN=LOC111431389 PE=...	[more]
A0A5D3BIQ9	1.5e-61	72.28	Transcription factor TCP5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3BEN2	1.5e-61	72.28	transcription factor TCP5 OS=Cucumis melo OX=3656 GN=LOC103488791 PE=4 SV=1	[more]
A0A0A0LTI3	2.0e-61	72.13	TCP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G039270 PE=4 SV...	[more]

BLAST of HG10020619 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G60970.1	8.7e-33	77.78	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5	[more]
AT5G08070.1	3.6e-31	69.89	TCP domain protein 17	[more]
AT3G02150.1	5.3e-30	67.02	plastid transcription factor 1	[more]
AT3G02150.2	5.3e-30	67.02	plastid transcription factor 1	[more]
AT4G18390.1	3.4e-21	62.50	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017887	Transcription factor TCP subgroup	PFAM	PF03634	TCP	coord: 25..99 e-value: 8.3E-24 score: 84.9
IPR017887	Transcription factor TCP subgroup	PROSITE	PS51369	TCP	coord: 25..83 score: 26.652945
IPR005333	Transcription factor, TCP	PANTHER	PTHR31072	TRANSCRIPTION FACTOR TCP4-RELATED	coord: 11..126
None	No IPR available	PANTHER	PTHR31072:SF119	TRANSCRIPTION FACTOR TCP17	coord: 11..126

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10020619.1	HG10020619.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0043565	sequence-specific DNA binding