HG10020342 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10020342
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Legume-specific protein
Location	Chr04: 31009542 .. 31009805 (+)
RNA-Seq Expression	HG10020342
Synteny	HG10020342

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGGTCTAATCCCCTTTGTTTACAAAGCGATCGTTCAATACAAGAATGAAAAACAAGTACCGGCGATCCGATCTTGGCTCTGCGACTCCCCTTCCACCTCCTACATCAGACTTCCCAGCGGCGATTCCGGCCGATTTCAATTCCAGTCCGACGGCTCACCTTCTTCAAAATCACCCTCTTCCACTGCCACCCAGATTCTGGTTTCTACCGGAGTTCAATCGCCGCTCCGCCATCTGACGTCTCGACGGGTTGCCGCCTAA

mRNA sequence

ATGGAAGGTCTAATCCCCTTTGTTTACAAAGCGATCGTTCAATACAAGAATGAAAAACAAGTACCGGCGATCCGATCTTGGCTCTGCGACTCCCCTTCCACCTCCTACATCAGACTTCCCAGCGGCGATTCCGGCCGATTTCAATTCCAGTCCGACGGCTCACCTTCTTCAAAATCACCCTCTTCCACTGCCACCCAGATTCTGGTTTCTACCGGAGTTCAATCGCCGCTCCGCCATCTGACGTCTCGACGGGTTGCCGCCTAA

Coding sequence (CDS)

ATGGAAGGTCTAATCCCCTTTGTTTACAAAGCGATCGTTCAATACAAGAATGAAAAACAAGTACCGGCGATCCGATCTTGGCTCTGCGACTCCCCTTCCACCTCCTACATCAGACTTCCCAGCGGCGATTCCGGCCGATTTCAATTCCAGTCCGACGGCTCACCTTCTTCAAAATCACCCTCTTCCACTGCCACCCAGATTCTGGTTTCTACCGGAGTTCAATCGCCGCTCCGCCATCTGACGTCTCGACGGGTTGCCGCCTAA

Protein sequence

MEGLIPFVYKAIVQYKNEKQVPAIRSWLCDSPSTSYIRLPSGDSGRFQFQSDGSPSSKSPSSTATQILVSTGVQSPLRHLTSRRVAA

Homology

[Close]

BLAST of HG10020342 vs. NCBI nr
Match: KAA0044116.1 (legume-specific protein [Cucumis melo var. makuwa] >TYK25022.1 legume-specific protein [Cucumis melo var. makuwa])

HSP 1 Score: 161.8 bits (408), Expect = 2.7e-36
Identity = 84/89 (94.38%), Postives = 86/89 (96.63%), Query Frame = 0


Query: 1  MEGLIPFVYKAIVQYKNEKQVPAIRSWLCDSPSTSYIRLPSGDSGRFQFQSDGSPSSKSP 60
          MEGLIPFVYKAIVQYKNEKQVPAIRSWLCDSPSTSYIRLPSGDSGRFQFQSD SPSSKSP
Sbjct: 1  MEGLIPFVYKAIVQYKNEKQVPAIRSWLCDSPSTSYIRLPSGDSGRFQFQSDASPSSKSP 60

Query: 61 --SSTATQILVSTGVQSPLRHLTSRRVAA 88
            S+TATQILVSTGVQSPLRHLT+RRVAA
Sbjct: 61 TSSTTATQILVSTGVQSPLRHLTTRRVAA 89

[Close]

BLAST of HG10020342 vs. NCBI nr
Match: KAE8650999.1 (hypothetical protein Csa_002313 [Cucumis sativus])

HSP 1 Score: 157.9 bits (398), Expect = 3.9e-35
Identity = 82/86 (95.35%), Postives = 83/86 (96.51%), Query Frame = 0


Query: 3   GLIPFVYKAIVQYKNEKQVPAIRSWLCDSPSTSYIRLPSGDSGRFQFQSDGSPSSKSP-S 62
           GLIPFVYKAIVQYKNEKQVPAIRSWLCDSPSTSYIRLPSGDSGRFQFQSD SPSSKSP S
Sbjct: 109 GLIPFVYKAIVQYKNEKQVPAIRSWLCDSPSTSYIRLPSGDSGRFQFQSDASPSSKSPTS 168

Query: 63  STATQILVSTGVQSPLRHLTSRRVAA 88
           ST TQILVSTGVQSPLRHLT+RRVAA
Sbjct: 169 STTTQILVSTGVQSPLRHLTTRRVAA 194

[Close]

BLAST of HG10020342 vs. NCBI nr
Match: KAG7017269.1 (hypothetical protein SDJN02_19132, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 147.9 bits (372), Expect = 4.1e-32
Identity = 78/89 (87.64%), Postives = 80/89 (89.89%), Query Frame = 0


Query: 1  MEGLIPFVYKAIVQYKNEKQVPAIRSWLCDSPSTSYIRLPSGDSGRFQ--FQSDGSPSSK 60
          MEG+IPFVYKAIVQYKNEKQVPAIRSWLCDSPSTSYIRLPSGDSGRFQ    S  SPSSK
Sbjct: 1  MEGIIPFVYKAIVQYKNEKQVPAIRSWLCDSPSTSYIRLPSGDSGRFQDGSYSAASPSSK 60

Query: 61 SPSSTATQILVSTGVQSPLRHLTSRRVAA 88
          S SST TQIL+STGVQSPLRHLT RRVAA
Sbjct: 61 SASSTTTQILISTGVQSPLRHLTPRRVAA 89

[Close]

BLAST of HG10020342 vs. NCBI nr
Match: KAG6580521.1 (hypothetical protein SDJN03_20523, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 146.4 bits (368), Expect = 1.2e-31
Identity = 77/89 (86.52%), Postives = 79/89 (88.76%), Query Frame = 0


Query: 1  MEGLIPFVYKAIVQYKNEKQVPAIRSWLCDSPSTSYIRLPSGDSGRFQ--FQSDGSPSSK 60
          MEG+IPFVYKAIVQYKNEKQVPAIRSWLCDSPSTSYIRLPSGDSGRFQ    S  SPSSK
Sbjct: 1  MEGIIPFVYKAIVQYKNEKQVPAIRSWLCDSPSTSYIRLPSGDSGRFQDGSYSAASPSSK 60

Query: 61 SPSSTATQILVSTGVQSPLRHLTSRRVAA 88
          S SST TQIL+STGVQSPLRHLT RRV A
Sbjct: 61 SASSTTTQILISTGVQSPLRHLTPRRVVA 89

[Close]

BLAST of HG10020342 vs. NCBI nr
Match: KAG6596392.1 (hypothetical protein SDJN03_09572, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 132.1 bits (331), Expect = 2.3e-27
Identity = 72/91 (79.12%), Postives = 75/91 (82.42%), Query Frame = 0


Query: 1  MEGLIPFVYKAIVQYKNEKQVPAIRSWLCDSPSTSYIRLPSGDSGRFQFQSDGS----PS 60
          MEGLIPFVY+AIV YKN+KQVP IRSWL DSPS SYIRLPSGDSGRF FQSDGS      
Sbjct: 1  MEGLIPFVYRAIVHYKNDKQVPPIRSWLTDSPSASYIRLPSGDSGRFLFQSDGSYTATSP 60

Query: 61 SKSPSSTATQILVSTGVQSPLRHLTSRRVAA 88
          SKS SSTATQILV+TGVQSPLR L   RVAA
Sbjct: 61 SKSVSSTATQILVATGVQSPLRQLAPSRVAA 91

[Close]

BLAST of HG10020342 vs. ExPASy TrEMBL
Match: A0A5D3DNC7 (Legume-specific protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G001410 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 1.3e-36
Identity = 84/89 (94.38%), Postives = 86/89 (96.63%), Query Frame = 0


Query: 1  MEGLIPFVYKAIVQYKNEKQVPAIRSWLCDSPSTSYIRLPSGDSGRFQFQSDGSPSSKSP 60
          MEGLIPFVYKAIVQYKNEKQVPAIRSWLCDSPSTSYIRLPSGDSGRFQFQSD SPSSKSP
Sbjct: 1  MEGLIPFVYKAIVQYKNEKQVPAIRSWLCDSPSTSYIRLPSGDSGRFQFQSDASPSSKSP 60

Query: 61 --SSTATQILVSTGVQSPLRHLTSRRVAA 88
            S+TATQILVSTGVQSPLRHLT+RRVAA
Sbjct: 61 TSSTTATQILVSTGVQSPLRHLTTRRVAA 89

[Close]

BLAST of HG10020342 vs. ExPASy TrEMBL
Match: A0A0A0LD26 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G733930 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 1.3e-36
Identity = 84/88 (95.45%), Postives = 85/88 (96.59%), Query Frame = 0


Query: 1  MEGLIPFVYKAIVQYKNEKQVPAIRSWLCDSPSTSYIRLPSGDSGRFQFQSDGSPSSKSP 60
          MEGLIPFVYKAIVQYKNEKQVPAIRSWLCDSPSTSYIRLPSGDSGRFQFQSD SPSSKSP
Sbjct: 1  MEGLIPFVYKAIVQYKNEKQVPAIRSWLCDSPSTSYIRLPSGDSGRFQFQSDASPSSKSP 60

Query: 61 -SSTATQILVSTGVQSPLRHLTSRRVAA 88
           SST TQILVSTGVQSPLRHLT+RRVAA
Sbjct: 61 TSSTTTQILVSTGVQSPLRHLTTRRVAA 88

[Close]

BLAST of HG10020342 vs. ExPASy TrEMBL
Match: K7MT87 (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_18G187300 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 3.5e-21
Identity = 62/94 (65.96%), Postives = 73/94 (77.66%), Query Frame = 0


Query: 1  MEGLIPFVYKAIVQYKNEKQVPAIRSWLCDSPSTSYIRLPSGDSGRFQFQ------SDGS 60
          MEGLIPFVYKAI+QYK +K    I SWLC+SPS SY+RLP+GDSGRFQ Q      S  S
Sbjct: 1  MEGLIPFVYKAIMQYKGDKDGHPIGSWLCESPSYSYMRLPAGDSGRFQIQAPASSFSAAS 60

Query: 61 PSSKSP-SSTATQILVSTGVQSPLRHLTSRRVAA 88
          PSS +P SS+ATQI+VS+GVQSP + LT RR+AA
Sbjct: 61 PSSTNPNSSSATQIIVSSGVQSPHQCLTHRRIAA 94

[Close]

BLAST of HG10020342 vs. ExPASy TrEMBL
Match: A0A0B2P904 (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_048924 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 2.3e-20
Identity = 61/94 (64.89%), Postives = 72/94 (76.60%), Query Frame = 0


Query: 1  MEGLIPFVYKAIVQYKNEKQVPAIRSWLCDSPSTSYIRLPSGDSGRFQFQ------SDGS 60
          MEGLIPFVYKAI+QYK +K    I SWLC+SPS SY+RLP+GDSGRFQ Q      S  S
Sbjct: 1  MEGLIPFVYKAIMQYKGDKDGHPIGSWLCESPSYSYMRLPAGDSGRFQIQAPASSFSAAS 60

Query: 61 PSSKSP-SSTATQILVSTGVQSPLRHLTSRRVAA 88
          PSS +P SS+ATQI+VS+GVQSP + LT R +AA
Sbjct: 61 PSSTNPNSSSATQIIVSSGVQSPHQCLTHRPIAA 94

[Close]

BLAST of HG10020342 vs. ExPASy TrEMBL
Match: C6SZB5 (Uncharacterized protein OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.5e-19
Identity = 60/94 (63.83%), Postives = 71/94 (75.53%), Query Frame = 0


Query: 1  MEGLIPFVYKAIVQYKNEKQVPAIRSWLCDSPSTSYIRLPSGDSGRFQFQ------SDGS 60
          ME LIPFVYKAI+QYK  K    I SWLC+SPS SY+RLP+GDSGRFQ +      S  S
Sbjct: 1  MESLIPFVYKAIMQYKGGKDGHPIGSWLCESPSYSYMRLPAGDSGRFQIRAPASSFSAAS 60

Query: 61 PSSKSP-SSTATQILVSTGVQSPLRHLTSRRVAA 88
          PSS +P SS+ATQI+VS+GVQSP + LT RR+AA
Sbjct: 61 PSSTNPNSSSATQIIVSSGVQSPHQCLTHRRIAA 94

[Close]

BLAST of HG10020342 vs. TAIR 10
Match: AT2G37750.1 (unknown protein; Has 21 Blast hits to 21 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 48.1 bits (113), Expect = 4.1e-06
Identity = 39/86 (45.35%), Postives = 46/86 (53.49%), Query Frame = 0


Query: 1  MEGLIPFVYKAIVQ--YKNEKQVPAIRSWLCDSPSTSYIRLPSGDSGRF-----QFQSDG 60
          MEGLIP VYKA++Q  Y NE Q            S+ Y+RLP GDSGRF          G
Sbjct: 1  MEGLIPLVYKAVMQIRYGNESQ---------QLSSSYYVRLP-GDSGRFVRSDLDVSGPG 60

Query: 61 SPSSK--SPSSTATQILVSTGVQSPL 78
          S SS   S S++ T   V  GVQSP+
Sbjct: 61 SNSSNRASSSTSTTTFAVYAGVQSPV 76

[Close]

BLAST of HG10020342 vs. TAIR 10
Match: AT5G02090.1 (unknown protein; Has 30 Blast hits to 30 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 45.8 bits (107), Expect = 2.0e-05
Identity = 25/50 (50.00%), Postives = 31/50 (62.00%), Query Frame = 0


Query: 1  MEGLIPFVYKAIVQYKNEKQVPAIRSWLCDSPSTS--YIRLPSGDSGRFQ 49
          MEGLIPF+YKAIV YK E    ++      SPS +  Y+RLP   S RF+
Sbjct: 1  MEGLIPFLYKAIVMYKREGSFSSVLLSDHHSPSNAGYYMRLPGDSSSRFR 50

The following BLAST results are available for this feature:

BLAST of HG10020342 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0044116.1	2.7e-36	94.38	legume-specific protein [Cucumis melo var. makuwa] >TYK25022.1 legume-specific p...	[more]
KAE8650999.1	3.9e-35	95.35	hypothetical protein Csa_002313 [Cucumis sativus]	[more]
KAG7017269.1	4.1e-32	87.64	hypothetical protein SDJN02_19132, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6580521.1	1.2e-31	86.52	hypothetical protein SDJN03_20523, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6596392.1	2.3e-27	79.12	hypothetical protein SDJN03_09572, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of HG10020342 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10020342 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DNC7	1.3e-36	94.38	Legume-specific protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0LD26	1.3e-36	95.45	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G733930 PE=4 SV=1	[more]
K7MT87	3.5e-21	65.96	Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_18G187300 PE=4 SV=1	[more]
A0A0B2P904	2.3e-20	64.89	Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_048924 PE=4 SV=1	[more]
C6SZB5	1.5e-19	63.83	Uncharacterized protein OS=Glycine max OX=3847 PE=2 SV=1	[more]

BLAST of HG10020342 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G37750.1	4.1e-06	45.35	unknown protein; Has 21 Blast hits to 21 proteins in 7 species: Archae - 0; Bact...	[more]
AT5G02090.1	2.0e-05	50.00	unknown protein; Has 30 Blast hits to 30 proteins in 10 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34670	EXPRESSED PROTEIN	coord: 1..87
None	No IPR available	PANTHER	PTHR34670:SF10	LEGUME-SPECIFIC PROTEIN	coord: 1..87

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10020342.1	HG10020342.1	mRNA