HG10020329 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10020329
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Light-harvesting complex-like protein OHP1, chloroplastic
Location	Chr04: 30912360 .. 30912909 (-)
RNA-Seq Expression	HG10020329
Synteny	HG10020329

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGACTCTGTCTCTTTCAAATTGGGTCTGTCCGTGCCAATAACAGCAGGGCTCGTGCTCCTTTCAGGGTTCAGGCCGCAAAGCCTCCGGCTGGAGTACGCTGTCTATCCTCTTCAAATTTGTGGACTTTTTCCCATTTCTGTTTCACCTGTTGAAAAAAATCGTTTACATCTCAAAAGCTTAAAGAAATTCAGAATAATTAATTCATGTGGTCTTGCGAATTACCTTTTCATTTCTGTTTTGAAGGTTGAATTGCCAAAAGTAGAGCCGAAATTCGAAGCCCCGTTTCTTGGATTCACTAAAACTGCTGAAATCTGGAATTCCAGAGCCTGTATGATAGGCCTCATTGGAACTTTCGTAGTGGAGCTGGTGAGGTTTTCTTTTTCTTTTTTTAATATAAAGAAAAACTTCTTTATTGTACCTTCAATGTCCAAGTTTACGGGGTTTATTTGTTTTTTTTTTTTTTCTGATTTTTCAGATATTGAACAAGAGTATACTTCAGGTGATTGGAGTTGATGTTGGGAAAGGCCTGGATCTTCCTCTTTGA

mRNA sequence

ATGGCCGACTCTGTCTCTTTCAAATTGGGTCTGTCCGTGCCAATAACAGCAGGGCTCGTGCTCCTTTCAGGGTTCAGGCCGCAAAGCCTCCGGCTGGAGTACGCTGTCTATCCTCTTCAAATTTGTGGACTTTTTCCCATTTCTGTTTCACCTGTTGAAAAAAATCGTTTACATCTCAAAAGCTTAAAGAAATTCAGAATAATTAATTCATGTGGTCTTGCGAATTACCTTTTCATTTCTGTTTTGAAGGTTGAATTGCCAAAAGTAGAGCCGAAATTCGAAGCCCCGTTTCTTGGATTCACTAAAACTGCTGAAATCTGGAATTCCAGAGCCTGTATGATAGGCCTCATTGGAACTTTCGTAGTGGAGCTGATATTGAACAAGAGTATACTTCAGGTGATTGGAGTTGATGTTGGGAAAGGCCTGGATCTTCCTCTTTGA

Coding sequence (CDS)

ATGGCCGACTCTGTCTCTTTCAAATTGGGTCTGTCCGTGCCAATAACAGCAGGGCTCGTGCTCCTTTCAGGGTTCAGGCCGCAAAGCCTCCGGCTGGAGTACGCTGTCTATCCTCTTCAAATTTGTGGACTTTTTCCCATTTCTGTTTCACCTGTTGAAAAAAATCGTTTACATCTCAAAAGCTTAAAGAAATTCAGAATAATTAATTCATGTGGTCTTGCGAATTACCTTTTCATTTCTGTTTTGAAGGTTGAATTGCCAAAAGTAGAGCCGAAATTCGAAGCCCCGTTTCTTGGATTCACTAAAACTGCTGAAATCTGGAATTCCAGAGCCTGTATGATAGGCCTCATTGGAACTTTCGTAGTGGAGCTGATATTGAACAAGAGTATACTTCAGGTGATTGGAGTTGATGTTGGGAAAGGCCTGGATCTTCCTCTTTGA

Protein sequence

MADSVSFKLGLSVPITAGLVLLSGFRPQSLRLEYAVYPLQICGLFPISVSPVEKNRLHLKSLKKFRIINSCGLANYLFISVLKVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILNKSILQVIGVDVGKGLDLPL

Homology

[Close]

BLAST of HG10020329 vs. NCBI nr
Match: XP_008442523.1 (PREDICTED: high-light-induced protein, chloroplastic [Cucumis melo] >KAA0044105.1 high-light-induced protein [Cucumis melo var. makuwa] >TYK25033.1 high-light-induced protein [Cucumis melo var. makuwa])

HSP 1 Score: 127.5 bits (319), Expect = 9.5e-26
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 84  VELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILNKSILQVIGVDVGKGLD 143
           VELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILNKSILQVIGVDVGKGLD
Sbjct: 58  VELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILNKSILQVIGVDVGKGLD 117

Query: 144 LPL 147
           LPL
Sbjct: 118 LPL 120

[Close]

BLAST of HG10020329 vs. NCBI nr
Match: RVW87355.1 (Light-harvesting complex-like protein OHP1, chloroplastic [Vitis vinifera])

HSP 1 Score: 123.6 bits (309), Expect = 1.4e-24
Identity = 59/64 (92.19%), Postives = 62/64 (96.88%), Query Frame = 0


Query: 83  KVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILNKSILQVIGVDVGKGL 142
           KVELPKVEPKFEAPFLGFT+TAEIWNSRACMIGLIG F+VELILNK ILQVIGVD+GKGL
Sbjct: 45  KVELPKVEPKFEAPFLGFTRTAEIWNSRACMIGLIGIFIVELILNKGILQVIGVDIGKGL 104

Query: 143 DLPL 147
           DLPL
Sbjct: 105 DLPL 108

[Close]

BLAST of HG10020329 vs. NCBI nr
Match: XP_038905156.1 (light-harvesting complex-like protein OHP1, chloroplastic [Benincasa hispida])

HSP 1 Score: 123.2 bits (308), Expect = 1.8e-24
Identity = 60/63 (95.24%), Postives = 61/63 (96.83%), Query Frame = 0


Query: 84  VELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILNKSILQVIGVDVGKGLD 143
           VELPKVEPKFEAPFLGFTKTAE+WNSRACMIGLIG FVVELILNK ILQVIGVDVGKGLD
Sbjct: 57  VELPKVEPKFEAPFLGFTKTAEVWNSRACMIGLIGIFVVELILNKGILQVIGVDVGKGLD 116

Query: 144 LPL 147
           LPL
Sbjct: 117 LPL 119

[Close]

BLAST of HG10020329 vs. NCBI nr
Match: XP_042511423.1 (light-harvesting complex-like protein OHP1, chloroplastic [Macadamia integrifolia])

HSP 1 Score: 122.9 bits (307), Expect = 2.3e-24
Identity = 59/63 (93.65%), Postives = 61/63 (96.83%), Query Frame = 0


Query: 84  VELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILNKSILQVIGVDVGKGLD 143
           VELPKVEPKF APFLGFTKTAEIWNSRACMIGLIGTF+VELILNK ILQ+IGVDVGKGLD
Sbjct: 58  VELPKVEPKFTAPFLGFTKTAEIWNSRACMIGLIGTFIVELILNKGILQIIGVDVGKGLD 117

Query: 144 LPL 147
           LPL
Sbjct: 118 LPL 120

[Close]

BLAST of HG10020329 vs. NCBI nr
Match: XP_039173619.1 (uncharacterized protein LOC104426439 [Eucalyptus grandis])

HSP 1 Score: 122.5 bits (306), Expect = 3.1e-24
Identity = 57/67 (85.07%), Postives = 66/67 (98.51%), Query Frame = 0


Query: 80  SVLKVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILNKSILQVIGVDVG 139
           ++L+VE+PKVEPKF+APFLGFT+TAEIWNSRACMIGLIGTF+VELI+NK ILQVIGV+VG
Sbjct: 156 ALLRVEVPKVEPKFQAPFLGFTRTAEIWNSRACMIGLIGTFIVELIINKGILQVIGVEVG 215

Query: 140 KGLDLPL 147
           KGLDLPL
Sbjct: 216 KGLDLPL 222

[Close]

BLAST of HG10020329 vs. ExPASy Swiss-Prot
Match: O81208 (Light-harvesting complex-like protein OHP1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=OHP1 PE=1 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.9e-21
Identity = 48/63 (76.19%), Postives = 57/63 (90.48%), Query Frame = 0


Query: 84  VELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILNKSILQVIGVDVGKGLD 143
           V +PK +PK +  FLGFT+TAEIWNSRACMIGLIGTF+VELILNK IL++IGV++GKGLD
Sbjct: 48  VIVPKAQPKSQPAFLGFTQTAEIWNSRACMIGLIGTFIVELILNKGILELIGVEIGKGLD 107

Query: 144 LPL 147
           LPL
Sbjct: 108 LPL 110

[Close]

BLAST of HG10020329 vs. ExPASy TrEMBL
Match: A0A5A7TRS8 (High-light-induced protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G001530 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 4.6e-26
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 84  VELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILNKSILQVIGVDVGKGLD 143
           VELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILNKSILQVIGVDVGKGLD
Sbjct: 58  VELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILNKSILQVIGVDVGKGLD 117

Query: 144 LPL 147
           LPL
Sbjct: 118 LPL 120

[Close]

BLAST of HG10020329 vs. ExPASy TrEMBL
Match: A0A1S3B5V9 (high-light-induced protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103486373 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 4.6e-26
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 84  VELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILNKSILQVIGVDVGKGLD 143
           VELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILNKSILQVIGVDVGKGLD
Sbjct: 58  VELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILNKSILQVIGVDVGKGLD 117

Query: 144 LPL 147
           LPL
Sbjct: 118 LPL 120

[Close]

BLAST of HG10020329 vs. ExPASy TrEMBL
Match: A0A438HSC8 (Light-harvesting complex-like protein OHP1, chloroplastic OS=Vitis vinifera OX=29760 GN=OHP1_1 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 6.7e-25
Identity = 59/64 (92.19%), Postives = 62/64 (96.88%), Query Frame = 0


Query: 83  KVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILNKSILQVIGVDVGKGL 142
           KVELPKVEPKFEAPFLGFT+TAEIWNSRACMIGLIG F+VELILNK ILQVIGVD+GKGL
Sbjct: 45  KVELPKVEPKFEAPFLGFTRTAEIWNSRACMIGLIGIFIVELILNKGILQVIGVDIGKGL 104

Query: 143 DLPL 147
           DLPL
Sbjct: 105 DLPL 108

[Close]

BLAST of HG10020329 vs. ExPASy TrEMBL
Match: A0A0A0LAI0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G734070 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 1.5e-24
Identity = 60/63 (95.24%), Postives = 61/63 (96.83%), Query Frame = 0


Query: 84  VELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILNKSILQVIGVDVGKGLD 143
           VELPKVEPKF+APFLGFTKTAEIWNSRACMIGLIG FVVELILNK ILQVIGVDVGKGLD
Sbjct: 58  VELPKVEPKFQAPFLGFTKTAEIWNSRACMIGLIGIFVVELILNKGILQVIGVDVGKGLD 117

Query: 144 LPL 147
           LPL
Sbjct: 118 LPL 120

[Close]

BLAST of HG10020329 vs. ExPASy TrEMBL
Match: A0A1U8A7L6 (light-harvesting complex-like protein OHP1, chloroplastic OS=Nelumbo nucifera OX=4432 GN=LOC104601073 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 1.9e-24
Identity = 58/63 (92.06%), Postives = 62/63 (98.41%), Query Frame = 0


Query: 84  VELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILNKSILQVIGVDVGKGLD 143
           VE+PKVEPKF++PFLGFTKTAEIWNSRACMIGLIGTF+VELILNK ILQVIGVDVGKGLD
Sbjct: 53  VEVPKVEPKFQSPFLGFTKTAEIWNSRACMIGLIGTFIVELILNKGILQVIGVDVGKGLD 112

Query: 144 LPL 147
           LPL
Sbjct: 113 LPL 115

[Close]

BLAST of HG10020329 vs. TAIR 10
Match: AT5G02120.1 (one helix protein )

HSP 1 Score: 103.6 bits (257), Expect = 1.4e-22
Identity = 48/63 (76.19%), Postives = 57/63 (90.48%), Query Frame = 0


Query: 84  VELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILNKSILQVIGVDVGKGLD 143
           V +PK +PK +  FLGFT+TAEIWNSRACMIGLIGTF+VELILNK IL++IGV++GKGLD
Sbjct: 48  VIVPKAQPKSQPAFLGFTQTAEIWNSRACMIGLIGTFIVELILNKGILELIGVEIGKGLD 107

Query: 144 LPL 147
           LPL
Sbjct: 108 LPL 110

The following BLAST results are available for this feature:

BLAST of HG10020329 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008442523.1	9.5e-26	100.00	PREDICTED: high-light-induced protein, chloroplastic [Cucumis melo] >KAA0044105....	[more]
RVW87355.1	1.4e-24	92.19	Light-harvesting complex-like protein OHP1, chloroplastic [Vitis vinifera]	[more]
XP_038905156.1	1.8e-24	95.24	light-harvesting complex-like protein OHP1, chloroplastic [Benincasa hispida]	[more]
XP_042511423.1	2.3e-24	93.65	light-harvesting complex-like protein OHP1, chloroplastic [Macadamia integrifoli...	[more]
XP_039173619.1	3.1e-24	85.07	uncharacterized protein LOC104426439 [Eucalyptus grandis]	[more]

BLAST of HG10020329 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O81208	1.9e-21	76.19	Light-harvesting complex-like protein OHP1, chloroplastic OS=Arabidopsis thalian...	[more]

BLAST of HG10020329 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TRS8	4.6e-26	100.00	High-light-induced protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A1S3B5V9	4.6e-26	100.00	high-light-induced protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC10348637...	[more]
A0A438HSC8	6.7e-25	92.19	Light-harvesting complex-like protein OHP1, chloroplastic OS=Vitis vinifera OX=2...	[more]
A0A0A0LAI0	1.5e-24	95.24	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G734070 PE=4 SV=1	[more]
A0A1U8A7L6	1.9e-24	92.06	light-harvesting complex-like protein OHP1, chloroplastic OS=Nelumbo nucifera OX...	[more]

BLAST of HG10020329 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G02120.1	1.4e-22	76.19	one helix protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR14154:SF51	LIGHT-HARVESTING COMPLEX-LIKE PROTEIN OHP1, CHLOROPLASTIC	coord: 69..143
None	No IPR available	PANTHER	PTHR14154	UPF0041 BRAIN PROTEIN 44-RELATED	coord: 69..143
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 92..136

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10020329.1	HG10020329.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007049	cell cycle
biological_process	GO:0051301	cell division
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane