HG10020293 (gene) Bottle gourd (Hangzhou Gourd) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGAATTTCCCCTACAACACCGCCAATTTCGACAACCTTCTTCTTCAAACTCTCATGGGGAGGCTCCAAATTGGGCCTCCAAACAACAACAATCCCCTTCCCTCCCAATCCCTCGAAGAACTTCTCTTCGACGCCGCCGATCTCTTCGACGATGACAACGACGAAAACAAAACCCAGCTCGCGAAAGAGGAATTGAAGCTCGAGCTTGAGATTATTCGCGTTATTTTCTCCGGAAATACCGATTCCCTAAAACCCAATTCCGGTCAGGCCGTCACAATCGGCGAGCACCACATATGCGTGGGGTTTCAAGAGGAGAAGGATTCAGATTATCGAGTTTGGGAATGGCACGGGCATATCATGTTGTTTGATGAAGAAAATGGGTACTCGCCGGAGTATATCTATGGGAACTACTTTGAGAGGCTTCAGGGAAAGTTCAACCGTGAGTTGAATAAACGAAGAGAGGAAGAAGAGGAGGAGGACGAGGAGGAGGAAGAAGAAGATGAAAAAGAGGAGAAGGTGGGCAACTTGGGACTTCGGGAGCTGATTGATGGCGGTGGTTCGAGTGCCGGTCGGATTCTTCATCGTAATGTCAACGCCAGTTCTCAAAGGTTCCGCATAATTTACTGTCAATTTTGCTGA ATGAATTTCCCCTACAACACCGCCAATTTCGACAACCTTCTTCTTCAAACTCTCATGGGGAGGCTCCAAATTGGGCCTCCAAACAACAACAATCCCCTTCCCTCCCAATCCCTCGAAGAACTTCTCTTCGACGCCGCCGATCTCTTCGACGATGACAACGACGAAAACAAAACCCAGCTCGCGAAAGAGGAATTGAAGCTCGAGCTTGAGATTATTCGCGTTATTTTCTCCGGAAATACCGATTCCCTAAAACCCAATTCCGGTCAGGCCGTCACAATCGGCGAGCACCACATATGCGTGGGGTTTCAAGAGGAGAAGGATTCAGATTATCGAGTTTGGGAATGGCACGGGCATATCATGTTGTTTGATGAAGAAAATGGGTACTCGCCGGAGTATATCTATGGGAACTACTTTGAGAGGCTTCAGGGAAAGTTCAACCGTGAGTTGAATAAACGAAGAGAGGAAGAAGAGGAGGAGGACGAGGAGGAGGAAGAAGAAGATGAAAAAGAGGAGAAGGTGGGCAACTTGGGACTTCGGGAGCTGATTGATGGCGGTGGTTCGAGTGCCGGTCGGATTCTTCATCGTAATGTCAACGCCAGTTCTCAAAGGTTCCGCATAATTTACTGTCAATTTTGCTGA ATGAATTTCCCCTACAACACCGCCAATTTCGACAACCTTCTTCTTCAAACTCTCATGGGGAGGCTCCAAATTGGGCCTCCAAACAACAACAATCCCCTTCCCTCCCAATCCCTCGAAGAACTTCTCTTCGACGCCGCCGATCTCTTCGACGATGACAACGACGAAAACAAAACCCAGCTCGCGAAAGAGGAATTGAAGCTCGAGCTTGAGATTATTCGCGTTATTTTCTCCGGAAATACCGATTCCCTAAAACCCAATTCCGGTCAGGCCGTCACAATCGGCGAGCACCACATATGCGTGGGGTTTCAAGAGGAGAAGGATTCAGATTATCGAGTTTGGGAATGGCACGGGCATATCATGTTGTTTGATGAAGAAAATGGGTACTCGCCGGAGTATATCTATGGGAACTACTTTGAGAGGCTTCAGGGAAAGTTCAACCGTGAGTTGAATAAACGAAGAGAGGAAGAAGAGGAGGAGGACGAGGAGGAGGAAGAAGAAGATGAAAAAGAGGAGAAGGTGGGCAACTTGGGACTTCGGGAGCTGATTGATGGCGGTGGTTCGAGTGCCGGTCGGATTCTTCATCGTAATGTCAACGCCAGTTCTCAAAGGTTCCGCATAATTTACTGTCAATTTTGCTGA MNFPYNTANFDNLLLQTLMGRLQIGPPNNNNPLPSQSLEELLFDAADLFDDDNDENKTQLAKEELKLELEIIRVIFSGNTDSLKPNSGQAVTIGEHHICVGFQEEKDSDYRVWEWHGHIMLFDEENGYSPEYIYGNYFERLQGKFNRELNKRREEEEEEDEEEEEEDEKEEKVGNLGLRELIDGGGSSAGRILHRNVNASSQRFRIIYCQFC Homology
BLAST of HG10020293 vs. NCBI nr
Match: XP_022145740.1 (uncharacterized protein LOC111015123 [Momordica charantia]) HSP 1 Score: 344.7 bits (883), Expect = 5.5e-91 Identity = 178/201 (88.56%), Postives = 188/201 (93.53%), Query Frame = 0
BLAST of HG10020293 vs. NCBI nr
Match: XP_038905389.1 (AT-rich interactive domain-containing protein 4B isoform X2 [Benincasa hispida] >XP_038905390.1 AT-rich interactive domain-containing protein 4B isoform X2 [Benincasa hispida]) HSP 1 Score: 333.6 bits (854), Expect = 1.3e-87 Identity = 176/206 (85.44%), Postives = 186/206 (90.29%), Query Frame = 0
BLAST of HG10020293 vs. NCBI nr
Match: XP_038905388.1 (AT-rich interactive domain-containing protein 4B isoform X1 [Benincasa hispida]) HSP 1 Score: 331.3 bits (848), Expect = 6.3e-87 Identity = 175/205 (85.37%), Postives = 185/205 (90.24%), Query Frame = 0
BLAST of HG10020293 vs. NCBI nr
Match: KAG6596424.1 (hypothetical protein SDJN03_09604, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 327.8 bits (839), Expect = 7.0e-86 Identity = 171/204 (83.82%), Postives = 181/204 (88.73%), Query Frame = 0
BLAST of HG10020293 vs. NCBI nr
Match: XP_022934613.1 (uncharacterized protein LOC111441746 [Cucurbita moschata]) HSP 1 Score: 325.9 bits (834), Expect = 2.6e-85 Identity = 169/199 (84.92%), Postives = 179/199 (89.95%), Query Frame = 0
BLAST of HG10020293 vs. ExPASy TrEMBL
Match: A0A6J1CVB7 (uncharacterized protein LOC111015123 OS=Momordica charantia OX=3673 GN=LOC111015123 PE=4 SV=1) HSP 1 Score: 344.7 bits (883), Expect = 2.7e-91 Identity = 178/201 (88.56%), Postives = 188/201 (93.53%), Query Frame = 0
BLAST of HG10020293 vs. ExPASy TrEMBL
Match: A0A6J1F855 (uncharacterized protein LOC111441746 OS=Cucurbita moschata OX=3662 GN=LOC111441746 PE=4 SV=1) HSP 1 Score: 325.9 bits (834), Expect = 1.3e-85 Identity = 169/199 (84.92%), Postives = 179/199 (89.95%), Query Frame = 0
BLAST of HG10020293 vs. ExPASy TrEMBL
Match: A0A6J1KW97 (uncharacterized protein LOC111498761 OS=Cucurbita maxima OX=3661 GN=LOC111498761 PE=4 SV=1) HSP 1 Score: 325.5 bits (833), Expect = 1.7e-85 Identity = 168/199 (84.42%), Postives = 178/199 (89.45%), Query Frame = 0
BLAST of HG10020293 vs. ExPASy TrEMBL
Match: A0A6J1J2Z9 (uncharacterized protein LOC111481390 OS=Cucurbita maxima OX=3661 GN=LOC111481390 PE=4 SV=1) HSP 1 Score: 316.6 bits (810), Expect = 7.8e-83 Identity = 169/205 (82.44%), Postives = 180/205 (87.80%), Query Frame = 0
BLAST of HG10020293 vs. ExPASy TrEMBL
Match: A0A6J1F6Q3 (uncharacterized protein LOC111441374 OS=Cucurbita moschata OX=3662 GN=LOC111441374 PE=4 SV=1) HSP 1 Score: 315.5 bits (807), Expect = 1.7e-82 Identity = 169/205 (82.44%), Postives = 182/205 (88.78%), Query Frame = 0
BLAST of HG10020293 vs. TAIR 10
Match: AT3G53630.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G18692.1); Has 42 Blast hits to 42 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 231.1 bits (588), Expect = 8.3e-61 Identity = 126/197 (63.96%), Postives = 152/197 (77.16%), Query Frame = 0
BLAST of HG10020293 vs. TAIR 10
Match: AT4G18692.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G53342.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 52.4 bits (124), Expect = 5.3e-07 Identity = 37/74 (50.00%), Postives = 48/74 (64.86%), Query Frame = 0
BLAST of HG10020293 vs. TAIR 10
Match: AT3G53342.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G18692.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 51.2 bits (121), Expect = 1.2e-06 Identity = 37/74 (50.00%), Postives = 47/74 (63.51%), Query Frame = 0
BLAST of HG10020293 vs. TAIR 10
Match: AT1G55710.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G53342.1); Has 19 Blast hits to 19 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 45.4 bits (106), Expect = 6.4e-05 Identity = 37/72 (51.39%), Postives = 44/72 (61.11%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
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