HG10019955 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10019955
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	squamosa promoter-binding-like protein 9
Location	Chr04: 27284443 .. 27285081 (-)
RNA-Seq Expression	HG10019955
Synteny	HG10019955

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATAGAAAACAGCAGCAGAGTCGGAAGCTTTCTAATGGATTTCAGTGCATATCCAAAGCTAACAGGAAAAGATGTCTGGTCGTCTGGTACAAAAGCATCTGAACGGGTACCCGGAAACCAAAGCATCAGTTCCATGGGAAAATACGTCCCACATCCCTGGCAGAGCAACTCTGAGAACAATCCATCTGAACTTCTCTTGCCAGTTTCTTCTGCAGGTGGAACCAGTTTTTCTGGTCCTGGGAATCCTTCTGGAGGATGCATCAATGGAGTTACTGACTCATCCTGTGCTCTCTCTCTTCTGTCAAACCAAACATGGGGCTCCAGAAACCGAACAACGGCTGTCGAGGTAAATGCCTTGTTGAATGCTGAAGGTGCACTTGTGGCTCAAACACCAACAGCTCATGCTGCTACCAATCATTTTCCGACCATGTCGTGGGGTTTCAAGGGGAATGAAACTCCTGCTAGCAGCTCCCTGGACCTGACATCTGATCTCGGTCTGAATCATCAAGTTTCACAGGCTCTTACCAGTTCTTTCTCTGGTGATGTCCAGTTTCCTCATCAAGTTAGGAGGTCATACATGGAACTTGGACATTCGGGTACCTTTGACTCAACCCAGCATCTACACTGGTCACTTTGA

mRNA sequence

ATGATAGAAAACAGCAGCAGAGTCGGAAGCTTTCTAATGGATTTCAGTGCATATCCAAAGCTAACAGGAAAAGATGTCTGGTCGTCTGGTACAAAAGCATCTGAACGGGTACCCGGAAACCAAAGCATCAGTTCCATGGGAAAATACGTCCCACATCCCTGGCAGAGCAACTCTGAGAACAATCCATCTGAACTTCTCTTGCCAGTTTCTTCTGCAGGTGGAACCAGTTTTTCTGGTCCTGGGAATCCTTCTGGAGGATGCATCAATGGAGTTACTGACTCATCCTGTGCTCTCTCTCTTCTGTCAAACCAAACATGGGGCTCCAGAAACCGAACAACGGCTGTCGAGGTAAATGCCTTGTTGAATGCTGAAGGTGCACTTGTGGCTCAAACACCAACAGCTCATGCTGCTACCAATCATTTTCCGACCATGTCGTGGGGTTTCAAGGGGAATGAAACTCCTGCTAGCAGCTCCCTGGACCTGACATCTGATCTCGGTCTGAATCATCAAGTTTCACAGGCTCTTACCAGTTCTTTCTCTGGTGATGTCCAGTTTCCTCATCAAGTTAGGAGGTCATACATGGAACTTGGACATTCGGGTACCTTTGACTCAACCCAGCATCTACACTGGTCACTTTGA

Coding sequence (CDS)

ATGATAGAAAACAGCAGCAGAGTCGGAAGCTTTCTAATGGATTTCAGTGCATATCCAAAGCTAACAGGAAAAGATGTCTGGTCGTCTGGTACAAAAGCATCTGAACGGGTACCCGGAAACCAAAGCATCAGTTCCATGGGAAAATACGTCCCACATCCCTGGCAGAGCAACTCTGAGAACAATCCATCTGAACTTCTCTTGCCAGTTTCTTCTGCAGGTGGAACCAGTTTTTCTGGTCCTGGGAATCCTTCTGGAGGATGCATCAATGGAGTTACTGACTCATCCTGTGCTCTCTCTCTTCTGTCAAACCAAACATGGGGCTCCAGAAACCGAACAACGGCTGTCGAGGTAAATGCCTTGTTGAATGCTGAAGGTGCACTTGTGGCTCAAACACCAACAGCTCATGCTGCTACCAATCATTTTCCGACCATGTCGTGGGGTTTCAAGGGGAATGAAACTCCTGCTAGCAGCTCCCTGGACCTGACATCTGATCTCGGTCTGAATCATCAAGTTTCACAGGCTCTTACCAGTTCTTTCTCTGGTGATGTCCAGTTTCCTCATCAAGTTAGGAGGTCATACATGGAACTTGGACATTCGGGTACCTTTGACTCAACCCAGCATCTACACTGGTCACTTTGA

Protein sequence

MIENSSRVGSFLMDFSAYPKLTGKDVWSSGTKASERVPGNQSISSMGKYVPHPWQSNSENNPSELLLPVSSAGGTSFSGPGNPSGGCINGVTDSSCALSLLSNQTWGSRNRTTAVEVNALLNAEGALVAQTPTAHAATNHFPTMSWGFKGNETPASSSLDLTSDLGLNHQVSQALTSSFSGDVQFPHQVRRSYMELGHSGTFDSTQHLHWSL

Homology

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BLAST of HG10019955 vs. NCBI nr
Match: XP_038905618.1 (squamosa promoter-binding-like protein 17 [Benincasa hispida])

HSP 1 Score: 373.2 bits (957), Expect = 1.4e-99
Identity = 189/212 (89.15%), Postives = 197/212 (92.92%), Query Frame = 0


Query: 1   MIENSSRVGSFLMDFSAYPKLTGKDVWSSGTKASERVPGNQSISSMGKYVPHPWQSNSEN 60
           + EN++RVGSFLMDFSAYPKLTGKDVWSSGTK SERVPGNQS++SMGKY+PHPWQSNS+N
Sbjct: 172 IFENNNRVGSFLMDFSAYPKLTGKDVWSSGTKTSERVPGNQSMTSMGKYIPHPWQSNSQN 231

Query: 61  NPSELLLPVSSAGGTSFSGPGNPSGGCINGVTDSSCALSLLSNQTWGSRNRTTAVEVNAL 120
           NPSELLLPV SAGGTS SGPGNPSG CINGVTDSSCALSLLSNQTWGSRNRTTAVEVNAL
Sbjct: 232 NPSELLLPV-SAGGTSCSGPGNPSGECINGVTDSSCALSLLSNQTWGSRNRTTAVEVNAL 291

Query: 121 LNAEGALVAQTPTAHAATNHFPTMSWGFKGNETPASSSLDLTSDLGLNHQVSQALTSSFS 180
           LNAEGALVAQT TAH A NHFPTMSWGFKGNE PASSSLDLTSDLGLN Q+SQ LT SFS
Sbjct: 292 LNAEGALVAQT-TAHGAANHFPTMSWGFKGNEAPASSSLDLTSDLGLN-QISQTLTGSFS 351

Query: 181 GDVQFPHQVRRSYMELGHSGTFDSTQHLHWSL 213
           GDVQFPHQ RR YMELGHSG FDSTQHLHWSL
Sbjct: 352 GDVQFPHQGRRPYMELGHSGAFDSTQHLHWSL 380

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BLAST of HG10019955 vs. NCBI nr
Match: XP_004136576.1 (squamosa promoter-binding-like protein 9 [Cucumis sativus] >KGN59315.1 hypothetical protein Csa_001653 [Cucumis sativus])

HSP 1 Score: 362.5 bits (929), Expect = 2.6e-96
Identity = 184/213 (86.38%), Postives = 192/213 (90.14%), Query Frame = 0


Query: 1   MIENSSRVGSFLMDFSAYPKLTGKDVWSSGTKASERVPGNQSISSMGKYVPHPWQSNSEN 60
           + ENS+RVGSFLMDFSAYPKL GKDVWS+GTKASERVPGN ++SSMGKYVPHPWQSNSEN
Sbjct: 172 IFENSNRVGSFLMDFSAYPKLAGKDVWSTGTKASERVPGNPNVSSMGKYVPHPWQSNSEN 231

Query: 61  NPSELLLPVSSAGGTSFSGPGNPSGG-CINGVTDSSCALSLLSNQTWGSRNRTTAVEVNA 120
           N  ELLLPV SAGGTSFSGPGNPSGG CIN VTDSSCALSLLSN++WGSRNRTT +EVNA
Sbjct: 232 NQPELLLPV-SAGGTSFSGPGNPSGGECINSVTDSSCALSLLSNESWGSRNRTTTIEVNA 291

Query: 121 LLNAEGALVAQTPTAHAATNHFPTMSWGFKGNETPASSSLDLTSDLGLNHQVSQALTSSF 180
           LLNAEG LVAQT TA AATNHFPTMSWGFKGNE P SS  DLTSDLGLNHQVS ALTSSF
Sbjct: 292 LLNAEGTLVAQT-TADAATNHFPTMSWGFKGNEAPTSSFRDLTSDLGLNHQVSHALTSSF 351

Query: 181 SGDVQFPHQVRRSYMELGHSGTFDSTQHLHWSL 213
           SGDVQFPH  RR YMELGHSG FDSTQHLHWSL
Sbjct: 352 SGDVQFPHLARRPYMELGHSGAFDSTQHLHWSL 382

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BLAST of HG10019955 vs. NCBI nr
Match: KAA0043720.1 (squamosa promoter-binding-like protein 9 isoform X1 [Cucumis melo var. makuwa] >TYK25413.1 squamosa promoter-binding-like protein 9 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 360.9 bits (925), Expect = 7.4e-96
Identity = 185/213 (86.85%), Postives = 191/213 (89.67%), Query Frame = 0


Query: 1   MIENSSRVGSFLMDFSAYPKLTGKDVWSSGTKASERVPGNQSISSMGKYVPHPWQSNSEN 60
           + ENS+RVGSFLMDFSAYPKL GKDVW SGTKASERV GN+SI S+GKYVPHPWQSNSEN
Sbjct: 71  IFENSNRVGSFLMDFSAYPKLAGKDVWLSGTKASERVLGNRSIGSIGKYVPHPWQSNSEN 130

Query: 61  NPSELLLPVSSAGGTSFSGPGNPSGG-CINGVTDSSCALSLLSNQTWGSRNRTTAVEVNA 120
           N  ELLLPV SAGGTSFSGPGNPSGG CIN VTDSSCALSLLSN++WGSRNRTT VEVNA
Sbjct: 131 NQPELLLPV-SAGGTSFSGPGNPSGGECINSVTDSSCALSLLSNESWGSRNRTTTVEVNA 190

Query: 121 LLNAEGALVAQTPTAHAATNHFPTMSWGFKGNETPASSSLDLTSDLGLNHQVSQALTSSF 180
           LLNAEG LVAQT T HAATNHFPTMSWGFKGNE P SS LDLTSDLGLNHQVS ALTSSF
Sbjct: 191 LLNAEGTLVAQT-TTHAATNHFPTMSWGFKGNEAPPSSFLDLTSDLGLNHQVSHALTSSF 250

Query: 181 SGDVQFPHQVRRSYMELGHSGTFDSTQHLHWSL 213
           SGDVQFPH  RR YMELGHSG FDSTQHLHWSL
Sbjct: 251 SGDVQFPHLARRPYMELGHSGAFDSTQHLHWSL 281

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BLAST of HG10019955 vs. NCBI nr
Match: XP_016899769.1 (PREDICTED: squamosa promoter-binding-like protein 9 isoform X2 [Cucumis melo])

HSP 1 Score: 360.9 bits (925), Expect = 7.4e-96
Identity = 185/213 (86.85%), Postives = 191/213 (89.67%), Query Frame = 0


Query: 1   MIENSSRVGSFLMDFSAYPKLTGKDVWSSGTKASERVPGNQSISSMGKYVPHPWQSNSEN 60
           + ENS+RVGSFLMDFSAYPKL GKDVW SGTKASERV GN+SI S+GKYVPHPWQSNSEN
Sbjct: 139 IFENSNRVGSFLMDFSAYPKLAGKDVWLSGTKASERVLGNRSIGSIGKYVPHPWQSNSEN 198

Query: 61  NPSELLLPVSSAGGTSFSGPGNPSGG-CINGVTDSSCALSLLSNQTWGSRNRTTAVEVNA 120
           N  ELLLPV SAGGTSFSGPGNPSGG CIN VTDSSCALSLLSN++WGSRNRTT VEVNA
Sbjct: 199 NQPELLLPV-SAGGTSFSGPGNPSGGECINSVTDSSCALSLLSNESWGSRNRTTTVEVNA 258

Query: 121 LLNAEGALVAQTPTAHAATNHFPTMSWGFKGNETPASSSLDLTSDLGLNHQVSQALTSSF 180
           LLNAEG LVAQT T HAATNHFPTMSWGFKGNE P SS LDLTSDLGLNHQVS ALTSSF
Sbjct: 259 LLNAEGTLVAQT-TTHAATNHFPTMSWGFKGNEAPPSSFLDLTSDLGLNHQVSHALTSSF 318

Query: 181 SGDVQFPHQVRRSYMELGHSGTFDSTQHLHWSL 213
           SGDVQFPH  RR YMELGHSG FDSTQHLHWSL
Sbjct: 319 SGDVQFPHLARRPYMELGHSGAFDSTQHLHWSL 349

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BLAST of HG10019955 vs. NCBI nr
Match: XP_008443072.1 (PREDICTED: squamosa promoter-binding-like protein 9 isoform X1 [Cucumis melo])

HSP 1 Score: 360.9 bits (925), Expect = 7.4e-96
Identity = 185/213 (86.85%), Postives = 191/213 (89.67%), Query Frame = 0


Query: 1   MIENSSRVGSFLMDFSAYPKLTGKDVWSSGTKASERVPGNQSISSMGKYVPHPWQSNSEN 60
           + ENS+RVGSFLMDFSAYPKL GKDVW SGTKASERV GN+SI S+GKYVPHPWQSNSEN
Sbjct: 172 IFENSNRVGSFLMDFSAYPKLAGKDVWLSGTKASERVLGNRSIGSIGKYVPHPWQSNSEN 231

Query: 61  NPSELLLPVSSAGGTSFSGPGNPSGG-CINGVTDSSCALSLLSNQTWGSRNRTTAVEVNA 120
           N  ELLLPV SAGGTSFSGPGNPSGG CIN VTDSSCALSLLSN++WGSRNRTT VEVNA
Sbjct: 232 NQPELLLPV-SAGGTSFSGPGNPSGGECINSVTDSSCALSLLSNESWGSRNRTTTVEVNA 291

Query: 121 LLNAEGALVAQTPTAHAATNHFPTMSWGFKGNETPASSSLDLTSDLGLNHQVSQALTSSF 180
           LLNAEG LVAQT T HAATNHFPTMSWGFKGNE P SS LDLTSDLGLNHQVS ALTSSF
Sbjct: 292 LLNAEGTLVAQT-TTHAATNHFPTMSWGFKGNEAPPSSFLDLTSDLGLNHQVSHALTSSF 351

Query: 181 SGDVQFPHQVRRSYMELGHSGTFDSTQHLHWSL 213
           SGDVQFPH  RR YMELGHSG FDSTQHLHWSL
Sbjct: 352 SGDVQFPHLARRPYMELGHSGAFDSTQHLHWSL 382

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BLAST of HG10019955 vs. ExPASy Swiss-Prot
Match: Q7EXZ2 (Squamosa promoter-binding-like protein 14 OS=Oryza sativa subsp. japonica OX=39947 GN=SPL14 PE=2 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.5e-06
Identity = 66/232 (28.45%), Postives = 100/232 (43.10%), Query Frame = 0


Query: 7   RVGSFLMDFS----------AYPKLTGKDVWSSGTKASERVPGNQSISSMGKYVPHPWQS 66
           R  SF +DFS          A+P +   D  S G +    V  +   S++  Y  + +  
Sbjct: 198 RFRSFTLDFSYPRVPSSVRNAWPAIQPGDRISGGIQWHRNVAPHGHSSAVAGYGANTYSG 257

Query: 67  NSENNPSELLLPVSSAGGTSFSGPGNPSGGCINGV---TDSSCALSLLSNQTWGSRNRTT 126
                        SS+G   F+GP  P GGC+ GV   TDSSCALSLLS Q W +   + 
Sbjct: 258 QGS----------SSSGPPVFAGPNLPPGGCLAGVGAATDSSCALSLLSTQPWDTTTHSA 317

Query: 127 AVEVN------ALLNAEGALVAQTPTAHAATNHFPTMSWGFKGNETPASS-SLDLTSDLG 186
           A   N         + +G  VA  P+A A +   P+   G +G+E    S +  L  ++ 
Sbjct: 318 AASHNQAAAMSTTTSFDGNPVA--PSAMAGSYMAPSPWTGSRGHEGGGRSVAHQLPHEVS 377

Query: 187 LNH-QVSQALTSSFSGDVQFPHQ----VRRSYMELGHSGTFDSTQH-LHWSL 213
           L+      +  + FSG+++   Q         ++ G   TFD T + + WSL
Sbjct: 378 LDEVHPGPSHHAHFSGELELALQGNGPAPAPRIDPGSGSTFDQTSNTMDWSL 417

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BLAST of HG10019955 vs. ExPASy Swiss-Prot
Match: A3C057 (Squamosa promoter-binding-like protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=SPL17 PE=2 SV=2)

HSP 1 Score: 49.7 bits (117), Expect = 4.8e-05
Identity = 46/122 (37.70%), Postives = 64/122 (52.46%), Query Frame = 0


Query: 3   ENSSRVGSFLMDFSAYPKLTG--KDVWSSGTKASERVPGNQSISSMGKYVPHPWQSNSEN 62
           E   R  SF++DFS YP++    +D W +  + S+R+ G  SI   G +  HP +S    
Sbjct: 166 EEPGRSRSFVVDFS-YPRVPSSVRDAWPA-IQPSDRMSG--SIQWQGGHELHPHRSAVAG 225

Query: 63  NPSELLLPVSSAGGTSFSGP--GNP-----SGGCINGV-TDSSCALSLLSNQTWGSRNRT 115
                    SS GG++   P   +P     SGGC+ GV TDSSCALSLLS Q W +   T
Sbjct: 226 YSDHHAF--SSHGGSAAGAPMLHHPAFELTSGGCLAGVATDSSCALSLLSTQPWDTTQST 281

[Close]

BLAST of HG10019955 vs. ExPASy TrEMBL
Match: A0A0A0LBC1 (SBP-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G809420 PE=4 SV=1)

HSP 1 Score: 362.5 bits (929), Expect = 1.2e-96
Identity = 184/213 (86.38%), Postives = 192/213 (90.14%), Query Frame = 0


Query: 1   MIENSSRVGSFLMDFSAYPKLTGKDVWSSGTKASERVPGNQSISSMGKYVPHPWQSNSEN 60
           + ENS+RVGSFLMDFSAYPKL GKDVWS+GTKASERVPGN ++SSMGKYVPHPWQSNSEN
Sbjct: 172 IFENSNRVGSFLMDFSAYPKLAGKDVWSTGTKASERVPGNPNVSSMGKYVPHPWQSNSEN 231

Query: 61  NPSELLLPVSSAGGTSFSGPGNPSGG-CINGVTDSSCALSLLSNQTWGSRNRTTAVEVNA 120
           N  ELLLPV SAGGTSFSGPGNPSGG CIN VTDSSCALSLLSN++WGSRNRTT +EVNA
Sbjct: 232 NQPELLLPV-SAGGTSFSGPGNPSGGECINSVTDSSCALSLLSNESWGSRNRTTTIEVNA 291

Query: 121 LLNAEGALVAQTPTAHAATNHFPTMSWGFKGNETPASSSLDLTSDLGLNHQVSQALTSSF 180
           LLNAEG LVAQT TA AATNHFPTMSWGFKGNE P SS  DLTSDLGLNHQVS ALTSSF
Sbjct: 292 LLNAEGTLVAQT-TADAATNHFPTMSWGFKGNEAPTSSFRDLTSDLGLNHQVSHALTSSF 351

Query: 181 SGDVQFPHQVRRSYMELGHSGTFDSTQHLHWSL 213
           SGDVQFPH  RR YMELGHSG FDSTQHLHWSL
Sbjct: 352 SGDVQFPHLARRPYMELGHSGAFDSTQHLHWSL 382

[Close]

BLAST of HG10019955 vs. ExPASy TrEMBL
Match: A0A5D3DP42 (Squamosa promoter-binding-like protein 9 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G005550 PE=4 SV=1)

HSP 1 Score: 360.9 bits (925), Expect = 3.6e-96
Identity = 185/213 (86.85%), Postives = 191/213 (89.67%), Query Frame = 0


Query: 1   MIENSSRVGSFLMDFSAYPKLTGKDVWSSGTKASERVPGNQSISSMGKYVPHPWQSNSEN 60
           + ENS+RVGSFLMDFSAYPKL GKDVW SGTKASERV GN+SI S+GKYVPHPWQSNSEN
Sbjct: 71  IFENSNRVGSFLMDFSAYPKLAGKDVWLSGTKASERVLGNRSIGSIGKYVPHPWQSNSEN 130

Query: 61  NPSELLLPVSSAGGTSFSGPGNPSGG-CINGVTDSSCALSLLSNQTWGSRNRTTAVEVNA 120
           N  ELLLPV SAGGTSFSGPGNPSGG CIN VTDSSCALSLLSN++WGSRNRTT VEVNA
Sbjct: 131 NQPELLLPV-SAGGTSFSGPGNPSGGECINSVTDSSCALSLLSNESWGSRNRTTTVEVNA 190

Query: 121 LLNAEGALVAQTPTAHAATNHFPTMSWGFKGNETPASSSLDLTSDLGLNHQVSQALTSSF 180
           LLNAEG LVAQT T HAATNHFPTMSWGFKGNE P SS LDLTSDLGLNHQVS ALTSSF
Sbjct: 191 LLNAEGTLVAQT-TTHAATNHFPTMSWGFKGNEAPPSSFLDLTSDLGLNHQVSHALTSSF 250

Query: 181 SGDVQFPHQVRRSYMELGHSGTFDSTQHLHWSL 213
           SGDVQFPH  RR YMELGHSG FDSTQHLHWSL
Sbjct: 251 SGDVQFPHLARRPYMELGHSGAFDSTQHLHWSL 281

[Close]

BLAST of HG10019955 vs. ExPASy TrEMBL
Match: A0A1S3B7Z5 (squamosa promoter-binding-like protein 9 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486778 PE=4 SV=1)

HSP 1 Score: 360.9 bits (925), Expect = 3.6e-96
Identity = 185/213 (86.85%), Postives = 191/213 (89.67%), Query Frame = 0


Query: 1   MIENSSRVGSFLMDFSAYPKLTGKDVWSSGTKASERVPGNQSISSMGKYVPHPWQSNSEN 60
           + ENS+RVGSFLMDFSAYPKL GKDVW SGTKASERV GN+SI S+GKYVPHPWQSNSEN
Sbjct: 172 IFENSNRVGSFLMDFSAYPKLAGKDVWLSGTKASERVLGNRSIGSIGKYVPHPWQSNSEN 231

Query: 61  NPSELLLPVSSAGGTSFSGPGNPSGG-CINGVTDSSCALSLLSNQTWGSRNRTTAVEVNA 120
           N  ELLLPV SAGGTSFSGPGNPSGG CIN VTDSSCALSLLSN++WGSRNRTT VEVNA
Sbjct: 232 NQPELLLPV-SAGGTSFSGPGNPSGGECINSVTDSSCALSLLSNESWGSRNRTTTVEVNA 291

Query: 121 LLNAEGALVAQTPTAHAATNHFPTMSWGFKGNETPASSSLDLTSDLGLNHQVSQALTSSF 180
           LLNAEG LVAQT T HAATNHFPTMSWGFKGNE P SS LDLTSDLGLNHQVS ALTSSF
Sbjct: 292 LLNAEGTLVAQT-TTHAATNHFPTMSWGFKGNEAPPSSFLDLTSDLGLNHQVSHALTSSF 351

Query: 181 SGDVQFPHQVRRSYMELGHSGTFDSTQHLHWSL 213
           SGDVQFPH  RR YMELGHSG FDSTQHLHWSL
Sbjct: 352 SGDVQFPHLARRPYMELGHSGAFDSTQHLHWSL 382

[Close]

BLAST of HG10019955 vs. ExPASy TrEMBL
Match: A0A1S4DUW0 (squamosa promoter-binding-like protein 9 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103486778 PE=4 SV=1)

HSP 1 Score: 360.9 bits (925), Expect = 3.6e-96
Identity = 185/213 (86.85%), Postives = 191/213 (89.67%), Query Frame = 0


Query: 1   MIENSSRVGSFLMDFSAYPKLTGKDVWSSGTKASERVPGNQSISSMGKYVPHPWQSNSEN 60
           + ENS+RVGSFLMDFSAYPKL GKDVW SGTKASERV GN+SI S+GKYVPHPWQSNSEN
Sbjct: 139 IFENSNRVGSFLMDFSAYPKLAGKDVWLSGTKASERVLGNRSIGSIGKYVPHPWQSNSEN 198

Query: 61  NPSELLLPVSSAGGTSFSGPGNPSGG-CINGVTDSSCALSLLSNQTWGSRNRTTAVEVNA 120
           N  ELLLPV SAGGTSFSGPGNPSGG CIN VTDSSCALSLLSN++WGSRNRTT VEVNA
Sbjct: 199 NQPELLLPV-SAGGTSFSGPGNPSGGECINSVTDSSCALSLLSNESWGSRNRTTTVEVNA 258

Query: 121 LLNAEGALVAQTPTAHAATNHFPTMSWGFKGNETPASSSLDLTSDLGLNHQVSQALTSSF 180
           LLNAEG LVAQT T HAATNHFPTMSWGFKGNE P SS LDLTSDLGLNHQVS ALTSSF
Sbjct: 259 LLNAEGTLVAQT-TTHAATNHFPTMSWGFKGNEAPPSSFLDLTSDLGLNHQVSHALTSSF 318

Query: 181 SGDVQFPHQVRRSYMELGHSGTFDSTQHLHWSL 213
           SGDVQFPH  RR YMELGHSG FDSTQHLHWSL
Sbjct: 319 SGDVQFPHLARRPYMELGHSGAFDSTQHLHWSL 349

[Close]

BLAST of HG10019955 vs. ExPASy TrEMBL
Match: A0A6J1F585 (squamosa promoter-binding-like protein 17 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111442278 PE=4 SV=1)

HSP 1 Score: 325.9 bits (834), Expect = 1.3e-85
Identity = 183/223 (82.06%), Postives = 193/223 (86.55%), Query Frame = 0


Query: 1   MIENSSRVGSFLMDFSAYPKLTGKDVW-SSGTKA-SERVPGNQSISSMGKYVPHPWQSNS 60
           + ENSSRVGSFLMDFSAYPKLTGKDVW SSG KA SERVPGNQ I+SMGKY+P+PWQS  
Sbjct: 173 IFENSSRVGSFLMDFSAYPKLTGKDVWSSSGMKASSERVPGNQGITSMGKYIPNPWQS-- 232

Query: 61  ENNPSELLLPVSSAGGTSFSGPGNPSGGCINGVTDSSCALSLLSNQTWGSRNRTTAVEVN 120
             NPSELLLPVSSAGGTS+SGPGNPSG CINGVTDSSCALSLLSNQTWGSRNR+T +EVN
Sbjct: 233 --NPSELLLPVSSAGGTSYSGPGNPSGECINGVTDSSCALSLLSNQTWGSRNRSTPLEVN 292

Query: 121 -ALLNAEGALVAQTPTAHAATNHFP----TMSWGFKGNETPASSSLDLTSDLGLNHQVSQ 180
            ALLNAEGALVAQT +AHAATNHFP      SW FKGNE+PAS SLDL SDLGLNHQVSQ
Sbjct: 293 AALLNAEGALVAQTTSAHAATNHFPMSMSMSSWSFKGNESPASISLDLASDLGLNHQVSQ 352

Query: 181 AL-TSSFSGDVQFPHQ-VRRSYMELGHS-GTFDST-QHLHWSL 213
           AL TSSFSGDVQFP+Q  RR YMELG S G FDST QHLHWSL
Sbjct: 353 ALTTSSFSGDVQFPNQGSRRPYMELGQSAGAFDSTQQHLHWSL 391

[Close]

BLAST of HG10019955 vs. TAIR 10
Match: AT2G42200.1 (squamosa promoter binding protein-like 9 )

HSP 1 Score: 42.4 bits (98), Expect = 5.4e-04
Identity = 51/173 (29.48%), Postives = 71/173 (41.04%), Query Frame = 0


Query: 54  WQSNSENNPSELLLPVSSAGGTSFSGPG--NPSGGCINGVTDSSCALSLLS--------- 113
           WQ N  N  S+  +     GGTSFS P   +       G+ DS+CALSLLS         
Sbjct: 207 WQINPMNVFSQGSV---GGGGTSFSSPEIMDTKLESYKGIGDSNCALSLLSNPHQPHDNN 266

Query: 114 -NQTWGSRNRTTAVEVNALLNAEGALVAQTPTAHAATNHFPTMSWGFKGNETPASSSLDL 173
            N    + N       ++        +AQ P A  + + +    W FK N+   S  L+L
Sbjct: 267 NNNNNNNNNNNNTWRASSGFGPMTVTMAQPPPA-PSQHQYLNPPWVFKDNDNDMSPVLNL 326

Query: 174 TSDLGL-NHQVSQALTSSFSGDVQFPHQVRRSYMELGHSGTFD-STQHLHWSL 213
                  N Q+S              HQ RR YME  ++  +D S+ H +WSL
Sbjct: 327 GRYTEPDNCQISSGTAMGEFELSDHHHQSRRQYMEDENTRAYDSSSHHTNWSL 375

The following BLAST results are available for this feature:

BLAST of HG10019955 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038905618.1	1.4e-99	89.15	squamosa promoter-binding-like protein 17 [Benincasa hispida]	[more]
XP_004136576.1	2.6e-96	86.38	squamosa promoter-binding-like protein 9 [Cucumis sativus] >KGN59315.1 hypotheti...	[more]
KAA0043720.1	7.4e-96	86.85	squamosa promoter-binding-like protein 9 isoform X1 [Cucumis melo var. makuwa] >...	[more]
XP_016899769.1	7.4e-96	86.85	PREDICTED: squamosa promoter-binding-like protein 9 isoform X2 [Cucumis melo]	[more]
XP_008443072.1	7.4e-96	86.85	PREDICTED: squamosa promoter-binding-like protein 9 isoform X1 [Cucumis melo]	[more]

BLAST of HG10019955 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q7EXZ2	2.5e-06	28.45	Squamosa promoter-binding-like protein 14 OS=Oryza sativa subsp. japonica OX=399...	[more]
A3C057	4.8e-05	37.70	Squamosa promoter-binding-like protein 17 OS=Oryza sativa subsp. japonica OX=399...	[more]

BLAST of HG10019955 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LBC1	1.2e-96	86.38	SBP-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G809420 PE...	[more]
A0A5D3DP42	3.6e-96	86.85	Squamosa promoter-binding-like protein 9 isoform X1 OS=Cucumis melo var. makuwa ...	[more]
A0A1S3B7Z5	3.6e-96	86.85	squamosa promoter-binding-like protein 9 isoform X1 OS=Cucumis melo OX=3656 GN=L...	[more]
A0A1S4DUW0	3.6e-96	86.85	squamosa promoter-binding-like protein 9 isoform X2 OS=Cucumis melo OX=3656 GN=L...	[more]
A0A6J1F585	1.3e-85	82.06	squamosa promoter-binding-like protein 17 isoform X1 OS=Cucurbita moschata OX=36...	[more]

BLAST of HG10019955 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G42200.1	5.4e-04	29.48	squamosa promoter binding protein-like 9	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31251:SF128	SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 17	coord: 1..212
IPR044817	Squamosa promoter-binding-like protein	PANTHER	PTHR31251	SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4	coord: 1..212

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10019955.1	HG10019955.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046872	metal ion binding