HG10019930 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10019930
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Unknown protein
Location	Chr04: 27047300 .. 27047665 (-)
RNA-Seq Expression	HG10019930
Synteny	HG10019930

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGAATGATAACAGTAGCAGAGGGAAGAATGCAAACAAAGGCCACATCAGCAACGGCGGCGGCGACATACAGTCTCCGGCGGTGTCGTCGTTGACGGAGGAGATATCGATATCGCAAGAGAAAAATGATGTTTTTCTGAATATGCAAAAGGGAAAGAGATCAGAGAGTGAAGAAGAAAGTCCAAGATTCAGAAAAGAAACCAAAAAGAATGAAAATGAAGAAAATAAAGAAAGTTTGGAAAATAATTCAGAAATGGAGTGGGTCCCAGGGATGAACATTCCAGGACCAATTCCTCATCTTTTTCCCATTATTCAGGAGCAATTCAATCTTCATAATTTCTTCAATGATCCACGTCTTGATTGA

mRNA sequence

ATGATGAATGATAACAGTAGCAGAGGGAAGAATGCAAACAAAGGCCACATCAGCAACGGCGGCGGCGACATACAGTCTCCGGCGGTGTCGTCGTTGACGGAGGAGATATCGATATCGCAAGAGAAAAATGATGTTTTTCTGAATATGCAAAAGGGAAAGAGATCAGAGAGTGAAGAAGAAAGTCCAAGATTCAGAAAAGAAACCAAAAAGAATGAAAATGAAGAAAATAAAGAAAGTTTGGAAAATAATTCAGAAATGGAGTGGGTCCCAGGGATGAACATTCCAGGACCAATTCCTCATCTTTTTCCCATTATTCAGGAGCAATTCAATCTTCATAATTTCTTCAATGATCCACGTCTTGATTGA

Coding sequence (CDS)

ATGATGAATGATAACAGTAGCAGAGGGAAGAATGCAAACAAAGGCCACATCAGCAACGGCGGCGGCGACATACAGTCTCCGGCGGTGTCGTCGTTGACGGAGGAGATATCGATATCGCAAGAGAAAAATGATGTTTTTCTGAATATGCAAAAGGGAAAGAGATCAGAGAGTGAAGAAGAAAGTCCAAGATTCAGAAAAGAAACCAAAAAGAATGAAAATGAAGAAAATAAAGAAAGTTTGGAAAATAATTCAGAAATGGAGTGGGTCCCAGGGATGAACATTCCAGGACCAATTCCTCATCTTTTTCCCATTATTCAGGAGCAATTCAATCTTCATAATTTCTTCAATGATCCACGTCTTGATTGA

Protein sequence

MMNDNSSRGKNANKGHISNGGGDIQSPAVSSLTEEISISQEKNDVFLNMQKGKRSESEEESPRFRKETKKNENEENKESLENNSEMEWVPGMNIPGPIPHLFPIIQEQFNLHNFFNDPRLD

Homology

[Close]

BLAST of HG10019930 vs. NCBI nr
Match: KGN59339.1 (hypothetical protein Csa_002297 [Cucumis sativus])

HSP 1 Score: 108.2 bits (269), Expect = 5.0e-20
Identity = 65/117 (55.56%), Postives = 84/117 (71.79%), Query Frame = 0


Query: 10  KNANKGHISNGGGDIQSPAVSSLTEEISISQEKNDVFLNMQKGKRSESEEESPR----FR 69
           K+AN G+I N  GD+ SP +SSL+EE+ +S+ +NDV   MQK  +SE ++ESPR      
Sbjct: 126 KSANNGNIGN-DGDVNSPTLSSLSEEMILSEGENDVLQKMQKRLKSE-DQESPRIIISIT 185

Query: 70  KETKKNENEENKESLENNSE-MEWVPGMNIPGPIPHLFPIIQEQFNLHNFFNDPRLD 122
           +  KK+E EE KESLENNSE M W+PG+ IPGPIP + PIIQ+QFNLH   +DP LD
Sbjct: 186 ESKKKSEKEETKESLENNSEIMGWIPGIEIPGPIPDIDPIIQQQFNLHTILDDPFLD 240

[Close]

BLAST of HG10019930 vs. NCBI nr
Match: TYK25435.1 (hypothetical protein E5676_scaffold352G005790 [Cucumis melo var. makuwa])

HSP 1 Score: 105.9 bits (263), Expect = 2.5e-19
Identity = 65/115 (56.52%), Postives = 80/115 (69.57%), Query Frame = 0


Query: 11  NANKGHISNGGGDIQSPAVSSLTEEISISQEKNDVFLNMQKGKRSESEEESPR---FRKE 70
           + NKGH+SN   D+ SP +SSL+ E+ IS+ +NDV   MQK   SE ++ESPR     + 
Sbjct: 188 STNKGHVSNDAKDVDSPTLSSLS-EVLISEGENDVLQKMQKRLESE-DQESPRIITISES 247

Query: 71  TKKNENEENKESLENNSE-MEWVPGMNIPGPIPHLFPIIQEQFNLHNFFNDPRLD 122
            KK+E EE KESLENNSE M WVPG+ IPGPIP L PII +QFNLH   +DP LD
Sbjct: 248 KKKSEKEETKESLENNSEIMGWVPGIEIPGPIPDLDPIIHQQFNLHTILDDPLLD 300

[Close]

BLAST of HG10019930 vs. ExPASy TrEMBL
Match: A0A0A0LEJ7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G812110 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 2.4e-20
Identity = 65/117 (55.56%), Postives = 84/117 (71.79%), Query Frame = 0


Query: 10  KNANKGHISNGGGDIQSPAVSSLTEEISISQEKNDVFLNMQKGKRSESEEESPR----FR 69
           K+AN G+I N  GD+ SP +SSL+EE+ +S+ +NDV   MQK  +SE ++ESPR      
Sbjct: 126 KSANNGNIGN-DGDVNSPTLSSLSEEMILSEGENDVLQKMQKRLKSE-DQESPRIIISIT 185

Query: 70  KETKKNENEENKESLENNSE-MEWVPGMNIPGPIPHLFPIIQEQFNLHNFFNDPRLD 122
           +  KK+E EE KESLENNSE M W+PG+ IPGPIP + PIIQ+QFNLH   +DP LD
Sbjct: 186 ESKKKSEKEETKESLENNSEIMGWIPGIEIPGPIPDIDPIIQQQFNLHTILDDPFLD 240

[Close]

BLAST of HG10019930 vs. ExPASy TrEMBL
Match: A0A5D3DPL9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G005790 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 1.2e-19
Identity = 65/115 (56.52%), Postives = 80/115 (69.57%), Query Frame = 0


Query: 11  NANKGHISNGGGDIQSPAVSSLTEEISISQEKNDVFLNMQKGKRSESEEESPR---FRKE 70
           + NKGH+SN   D+ SP +SSL+ E+ IS+ +NDV   MQK   SE ++ESPR     + 
Sbjct: 188 STNKGHVSNDAKDVDSPTLSSLS-EVLISEGENDVLQKMQKRLESE-DQESPRIITISES 247

Query: 71  TKKNENEENKESLENNSE-MEWVPGMNIPGPIPHLFPIIQEQFNLHNFFNDPRLD 122
            KK+E EE KESLENNSE M WVPG+ IPGPIP L PII +QFNLH   +DP LD
Sbjct: 248 KKKSEKEETKESLENNSEIMGWVPGIEIPGPIPDLDPIIHQQFNLHTILDDPLLD 300

The following BLAST results are available for this feature:

BLAST of HG10019930 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN59339.1	5.0e-20	55.56	hypothetical protein Csa_002297 [Cucumis sativus]	[more]
TYK25435.1	2.5e-19	56.52	hypothetical protein E5676_scaffold352G005790 [Cucumis melo var. makuwa]	[more]

BLAST of HG10019930 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10019930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LEJ7	2.4e-20	55.56	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G812110 PE=4 SV=1	[more]
A0A5D3DPL9	1.2e-19	56.52	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of HG10019930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 63..83
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..88
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..46
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 47..82

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10019930.1	HG10019930.1	mRNA