HG10019912 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10019912
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	DNA topoisomerase
Location	Chr04: 26840691 .. 26841443 (-)
RNA-Seq Expression	HG10019912
Synteny	HG10019912

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCAGCGGCCGTCCGATTACCGTCCTCAATGTGGCAGAGAAGCCATCGGTGGCGAAATCCGTGGCCACCATACTCTCCAGGAACCAGGGTCTTCGAGTTCGCGAAGGTCGCTCTCGCTACAACAAGATTTTCGAGTTCAACTACGCCATTCGAGGCCAGTCTTGCAATATGCTCGTCACCTCCGTCACTGGCCACCTCATGGAGCTCGATTTTGAAGAACGGTACCGGAAATGGCACTCCTGCGATCCAGTTCAGCTCTTCCACGCTCCCATCCGCAAATTTGTCCCCGAGGTCTGTCTCGTTTTCTTCATACTTGCATCTTCATTTGCCTTGCTTCCTAGACAGCATTCTCGCGTTTGATGTTTGCATAATGGATAACAATAGATGCAATTTGTATGTAGCATTCAGTGCATTGTCAGTTTAGCTTGTAGCAGTTTCTGAAAGGAGGACCAGTGGTCTTTACCAGTAGCCTTATCTCAGACAAAAATTCCGTGTAAGGGTCGGCGTTGTAAGCTGATACAATTTTTACCAATTTCTATGAAAATTTCCCTCCTCTTTGCCTCAAAGTGGTCCTGGATCATCCTATCTCTGATCTTAGTTATGGCCTTTTGGAAAGGTCTACAGTTAGGCCAATTTCCGCCTACGGCAAGTTTCAAGTGGCTGTTCTTGATTTTCGTCAGTGCATCTTCCTTTCGGGGTTACCACATCAGAGTTGCAGTCGTTGAAGGTTTTCGCTTAACAACTAGCTGA

mRNA sequence

ATGTCCAGCGGCCGTCCGATTACCGTCCTCAATGTGGCAGAGAAGCCATCGGTGGCGAAATCCGTGGCCACCATACTCTCCAGGAACCAGGGTCTTCGAGTTCGCGAAGGTCGCTCTCGCTACAACAAGATTTTCGAGTTCAACTACGCCATTCGAGGCCAGTCTTGCAATATGCTCGTCACCTCCGTCACTGGCCACCTCATGGAGCTCGATTTTGAAGAACGGTACCGGAAATGGCACTCCTGCGATCCAGTTCAGCTCTTCCACGCTCCCATCCGCAAATTTGTCCCCGAGTGGTCCTGGATCATCCTATCTCTGATCTTAGTTATGGCCTTTTGGAAAGGTCTACAGTTAGGCCAATTTCCGCCTACGGCAAGTTTCAAGTGGCTGTTCTTGATTTTCGTCAGTGCATCTTCCTTTCGGGGTTACCACATCAGAGTTGCAGTCGTTGAAGGTTTTCGCTTAACAACTAGCTGA

Coding sequence (CDS)

ATGTCCAGCGGCCGTCCGATTACCGTCCTCAATGTGGCAGAGAAGCCATCGGTGGCGAAATCCGTGGCCACCATACTCTCCAGGAACCAGGGTCTTCGAGTTCGCGAAGGTCGCTCTCGCTACAACAAGATTTTCGAGTTCAACTACGCCATTCGAGGCCAGTCTTGCAATATGCTCGTCACCTCCGTCACTGGCCACCTCATGGAGCTCGATTTTGAAGAACGGTACCGGAAATGGCACTCCTGCGATCCAGTTCAGCTCTTCCACGCTCCCATCCGCAAATTTGTCCCCGAGTGGTCCTGGATCATCCTATCTCTGATCTTAGTTATGGCCTTTTGGAAAGGTCTACAGTTAGGCCAATTTCCGCCTACGGCAAGTTTCAAGTGGCTGTTCTTGATTTTCGTCAGTGCATCTTCCTTTCGGGGTTACCACATCAGAGTTGCAGTCGTTGAAGGTTTTCGCTTAACAACTAGCTGA

Protein sequence

MSSGRPITVLNVAEKPSVAKSVATILSRNQGLRVREGRSRYNKIFEFNYAIRGQSCNMLVTSVTGHLMELDFEERYRKWHSCDPVQLFHAPIRKFVPEWSWIILSLILVMAFWKGLQLGQFPPTASFKWLFLIFVSASSFRGYHIRVAVVEGFRLTTS

Homology

[Close]

BLAST of HG10019912 vs. NCBI nr
Match: XP_038904102.1 (DNA topoisomerase 3-alpha isoform X2 [Benincasa hispida])

HSP 1 Score: 194.5 bits (493), Expect = 6.9e-46
Identity = 92/98 (93.88%), Postives = 96/98 (97.96%), Query Frame = 0


Query: 1  MSSGRPITVLNVAEKPSVAKSVATILSRNQGLRVREGRSRYNKIFEFNYAIRGQSCNMLV 60
          MS GRPITVLNVAEKPSVAKSVATILSRNQGLRVR+GRSRYNKIFEFNYAIRGQSCNM+V
Sbjct: 1  MSGGRPITVLNVAEKPSVAKSVATILSRNQGLRVRDGRSRYNKIFEFNYAIRGQSCNMIV 60

Query: 61 TSVTGHLMELDFEERYRKWHSCDPVQLFHAPIRKFVPE 99
          TSVTGHLMEL+FEERYRKWHSCDPVQLFHAP+RK VPE
Sbjct: 61 TSVTGHLMELEFEERYRKWHSCDPVQLFHAPVRKVVPE 98

[Close]

BLAST of HG10019912 vs. NCBI nr
Match: XP_038904101.1 (DNA topoisomerase 3-alpha isoform X1 [Benincasa hispida])

HSP 1 Score: 194.5 bits (493), Expect = 6.9e-46
Identity = 92/98 (93.88%), Postives = 96/98 (97.96%), Query Frame = 0


Query: 1  MSSGRPITVLNVAEKPSVAKSVATILSRNQGLRVREGRSRYNKIFEFNYAIRGQSCNMLV 60
          MS GRPITVLNVAEKPSVAKSVATILSRNQGLRVR+GRSRYNKIFEFNYAIRGQSCNM+V
Sbjct: 1  MSGGRPITVLNVAEKPSVAKSVATILSRNQGLRVRDGRSRYNKIFEFNYAIRGQSCNMIV 60

Query: 61 TSVTGHLMELDFEERYRKWHSCDPVQLFHAPIRKFVPE 99
          TSVTGHLMEL+FEERYRKWHSCDPVQLFHAP+RK VPE
Sbjct: 61 TSVTGHLMELEFEERYRKWHSCDPVQLFHAPVRKVVPE 98

[Close]

BLAST of HG10019912 vs. NCBI nr
Match: XP_022154286.1 (DNA topoisomerase 3-alpha [Momordica charantia])

HSP 1 Score: 193.4 bits (490), Expect = 1.5e-45
Identity = 91/98 (92.86%), Postives = 95/98 (96.94%), Query Frame = 0


Query: 1  MSSGRPITVLNVAEKPSVAKSVATILSRNQGLRVREGRSRYNKIFEFNYAIRGQSCNMLV 60
          MS GRPITVLNVAEKPSVAK+VATILSRNQGLRVR+GRSRYNKIFEFNYAIRGQSCNMLV
Sbjct: 1  MSGGRPITVLNVAEKPSVAKAVATILSRNQGLRVRDGRSRYNKIFEFNYAIRGQSCNMLV 60

Query: 61 TSVTGHLMELDFEERYRKWHSCDPVQLFHAPIRKFVPE 99
          TSVTGHLMEL+FEERYRKWHSCDP  LFHAP+RKFVPE
Sbjct: 61 TSVTGHLMELEFEERYRKWHSCDPADLFHAPVRKFVPE 98

[Close]

BLAST of HG10019912 vs. NCBI nr
Match: XP_022934066.1 (DNA topoisomerase 3-alpha isoform X1 [Cucurbita moschata])

HSP 1 Score: 191.8 bits (486), Expect = 4.4e-45
Identity = 91/98 (92.86%), Postives = 96/98 (97.96%), Query Frame = 0


Query: 1  MSSGRPITVLNVAEKPSVAKSVATILSRNQGLRVREGRSRYNKIFEFNYAIRGQSCNMLV 60
          M+ GRPITVLNVAEKPSVAKSVATILSRNQGLRVREGRSRYNKIFEFNYAIRGQSCNMLV
Sbjct: 1  MAGGRPITVLNVAEKPSVAKSVATILSRNQGLRVREGRSRYNKIFEFNYAIRGQSCNMLV 60

Query: 61 TSVTGHLMELDFEERYRKWHSCDPVQLFHAPIRKFVPE 99
          TSVTGHLMEL+FEERYRKWHSCDPV+LF+AP+RK VPE
Sbjct: 61 TSVTGHLMELEFEERYRKWHSCDPVELFNAPVRKLVPE 98

[Close]

BLAST of HG10019912 vs. NCBI nr
Match: XP_022934067.1 (DNA topoisomerase 3-alpha isoform X2 [Cucurbita moschata])

HSP 1 Score: 191.8 bits (486), Expect = 4.4e-45
Identity = 91/98 (92.86%), Postives = 96/98 (97.96%), Query Frame = 0


Query: 1  MSSGRPITVLNVAEKPSVAKSVATILSRNQGLRVREGRSRYNKIFEFNYAIRGQSCNMLV 60
          M+ GRPITVLNVAEKPSVAKSVATILSRNQGLRVREGRSRYNKIFEFNYAIRGQSCNMLV
Sbjct: 1  MAGGRPITVLNVAEKPSVAKSVATILSRNQGLRVREGRSRYNKIFEFNYAIRGQSCNMLV 60

Query: 61 TSVTGHLMELDFEERYRKWHSCDPVQLFHAPIRKFVPE 99
          TSVTGHLMEL+FEERYRKWHSCDPV+LF+AP+RK VPE
Sbjct: 61 TSVTGHLMELEFEERYRKWHSCDPVELFNAPVRKLVPE 98

[Close]

BLAST of HG10019912 vs. ExPASy Swiss-Prot
Match: C7J0A2 (DNA topoisomerase 3-alpha OS=Oryza sativa subsp. japonica OX=39947 GN=TOP3A PE=3 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 7.4e-35
Identity = 69/96 (71.88%), Postives = 85/96 (88.54%), Query Frame = 0


Query: 4   GRPITVLNVAEKPSVAKSVATILSR-NQGLRVREGRSRYNKIFEFNYAIRGQSCNMLVTS 63
           G  I VLNVAEKPSVAKSVA ILSR + G+R REGRSRYN++FEF+Y+I G++C+MLVTS
Sbjct: 7   GGAIRVLNVAEKPSVAKSVAEILSRPSGGMRSREGRSRYNRVFEFDYSIGGRACHMLVTS 66

Query: 64  VTGHLMELDFEERYRKWHSCDPVQLFHAPIRKFVPE 99
           VTGHLMEL+F++R+R+WHSCDP  LFHAP+RK VP+
Sbjct: 67  VTGHLMELEFDDRFRRWHSCDPADLFHAPVRKSVPQ 102

[Close]

BLAST of HG10019912 vs. ExPASy Swiss-Prot
Match: Q9LVP1 (DNA topoisomerase 3-alpha OS=Arabidopsis thaliana OX=3702 GN=TOP3A PE=1 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.3e-34
Identity = 71/95 (74.74%), Postives = 78/95 (82.11%), Query Frame = 0


Query: 4  GRPITVLNVAEKPSVAKSVATILSRNQGLRVREGRSRYNKIFEFNYAIRGQSCNMLVTSV 63
          G P+TVLNVAEKPSVAKSVA ILSR    R REGRSRYNKIFEF+YAI GQ C ML+TSV
Sbjct: 6  GGPVTVLNVAEKPSVAKSVAGILSRGT-FRTREGRSRYNKIFEFDYAINGQPCRMLMTSV 65

Query: 64 TGHLMELDFEERYRKWHSCDPVQLFHAPIRKFVPE 99
           GHLMEL+F +RYRKWHSCDP  L+ AP+ K VPE
Sbjct: 66 IGHLMELEFADRYRKWHSCDPADLYQAPVMKHVPE 99

[Close]

BLAST of HG10019912 vs. ExPASy Swiss-Prot
Match: Q8T2T7 (DNA topoisomerase 3 OS=Dictyostelium discoideum OX=44689 GN=top3 PE=3 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 6.5e-23
Identity = 54/90 (60.00%), Postives = 66/90 (73.33%), Query Frame = 0


Query: 9  VLNVAEKPSVAKSVATILSRNQGLRVREGRSRYNKIFEFNYAIRG-QSCNMLVTSVTGHL 68
          +LNVAEKPS AK +A ILS N+   VREG S+YNK+++F Y I     C M  TSVTGHL
Sbjct: 5  ILNVAEKPSAAKEIAAILS-NKRATVREGFSKYNKLWDFKYNILNFNDCEMTFTSVTGHL 64

Query: 69 MELDFEERYRKWHSCDPVQLFHAPIRKFVP 98
          ME+D  E+++ W SCDP+QLF APIRK VP
Sbjct: 65 MEIDVVEQFKPWASCDPIQLFDAPIRKTVP 93

[Close]

BLAST of HG10019912 vs. ExPASy Swiss-Prot
Match: Q13472 (DNA topoisomerase 3-alpha OS=Homo sapiens OX=9606 GN=TOP3A PE=1 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 8.8e-20
Identity = 47/90 (52.22%), Postives = 66/90 (73.33%), Query Frame = 0


Query: 9   VLNVAEKPSVAKSVATILSRNQGLRVREGRSRYNKIFEFNYAIRGQSCNMLVTSVTGHLM 68
           VL VAEK   AK +A +LS N  +R REG S++NKI+EF+Y + GQ+  M++TSV+GHL+
Sbjct: 36  VLCVAEKNDAAKGIADLLS-NGRMRRREGLSKFNKIYEFDYHLYGQNVTMVMTSVSGHLL 95

Query: 69  ELDFEERYRKWHSCDPVQLFHAPIRKFVPE 99
             DF+ ++RKW SC+P+ LF A I K+ PE
Sbjct: 96  AHDFQMQFRKWQSCNPLVLFEAEIEKYCPE 124

[Close]

BLAST of HG10019912 vs. ExPASy Swiss-Prot
Match: O70157 (DNA topoisomerase 3-alpha OS=Mus musculus OX=10090 GN=Top3a PE=2 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.5e-19
Identity = 46/90 (51.11%), Postives = 66/90 (73.33%), Query Frame = 0


Query: 9   VLNVAEKPSVAKSVATILSRNQGLRVREGRSRYNKIFEFNYAIRGQSCNMLVTSVTGHLM 68
           VL VAEK   AK +A +LS N  +R +EG S++NKI+EF+Y + GQ+  M++TSV+GHL+
Sbjct: 36  VLCVAEKNDAAKGIADLLS-NGRMRRKEGLSKFNKIYEFDYHLYGQNVTMIMTSVSGHLL 95

Query: 69  ELDFEERYRKWHSCDPVQLFHAPIRKFVPE 99
             DF+ ++RKW SC+P+ LF A I K+ PE
Sbjct: 96  AHDFQMQFRKWQSCNPLVLFEAEIEKYCPE 124

[Close]

BLAST of HG10019912 vs. ExPASy TrEMBL
Match: A0A6J1DNA0 (DNA topoisomerase OS=Momordica charantia OX=3673 GN=LOC111021577 PE=3 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 7.4e-46
Identity = 91/98 (92.86%), Postives = 95/98 (96.94%), Query Frame = 0


Query: 1  MSSGRPITVLNVAEKPSVAKSVATILSRNQGLRVREGRSRYNKIFEFNYAIRGQSCNMLV 60
          MS GRPITVLNVAEKPSVAK+VATILSRNQGLRVR+GRSRYNKIFEFNYAIRGQSCNMLV
Sbjct: 1  MSGGRPITVLNVAEKPSVAKAVATILSRNQGLRVRDGRSRYNKIFEFNYAIRGQSCNMLV 60

Query: 61 TSVTGHLMELDFEERYRKWHSCDPVQLFHAPIRKFVPE 99
          TSVTGHLMEL+FEERYRKWHSCDP  LFHAP+RKFVPE
Sbjct: 61 TSVTGHLMELEFEERYRKWHSCDPADLFHAPVRKFVPE 98

[Close]

BLAST of HG10019912 vs. ExPASy TrEMBL
Match: A0A6J1IXM8 (DNA topoisomerase OS=Cucurbita maxima OX=3661 GN=LOC111481572 PE=3 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 2.2e-45
Identity = 91/98 (92.86%), Postives = 96/98 (97.96%), Query Frame = 0


Query: 1  MSSGRPITVLNVAEKPSVAKSVATILSRNQGLRVREGRSRYNKIFEFNYAIRGQSCNMLV 60
          M+ GRPITVLNVAEKPSVAKSVATILSRNQGLRVREGRSRYNKIFEFNYAIRGQSCNMLV
Sbjct: 1  MAGGRPITVLNVAEKPSVAKSVATILSRNQGLRVREGRSRYNKIFEFNYAIRGQSCNMLV 60

Query: 61 TSVTGHLMELDFEERYRKWHSCDPVQLFHAPIRKFVPE 99
          TSVTGHLMEL+FEERYRKWHSCDPV+LF+AP+RK VPE
Sbjct: 61 TSVTGHLMELEFEERYRKWHSCDPVELFNAPVRKLVPE 98

[Close]

BLAST of HG10019912 vs. ExPASy TrEMBL
Match: A0A6J1J603 (DNA topoisomerase OS=Cucurbita maxima OX=3661 GN=LOC111481572 PE=3 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 2.2e-45
Identity = 91/98 (92.86%), Postives = 96/98 (97.96%), Query Frame = 0


Query: 1  MSSGRPITVLNVAEKPSVAKSVATILSRNQGLRVREGRSRYNKIFEFNYAIRGQSCNMLV 60
          M+ GRPITVLNVAEKPSVAKSVATILSRNQGLRVREGRSRYNKIFEFNYAIRGQSCNMLV
Sbjct: 1  MAGGRPITVLNVAEKPSVAKSVATILSRNQGLRVREGRSRYNKIFEFNYAIRGQSCNMLV 60

Query: 61 TSVTGHLMELDFEERYRKWHSCDPVQLFHAPIRKFVPE 99
          TSVTGHLMEL+FEERYRKWHSCDPV+LF+AP+RK VPE
Sbjct: 61 TSVTGHLMELEFEERYRKWHSCDPVELFNAPVRKLVPE 98

[Close]

BLAST of HG10019912 vs. ExPASy TrEMBL
Match: A0A6J1F1M3 (DNA topoisomerase OS=Cucurbita moschata OX=3662 GN=LOC111441350 PE=3 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 2.2e-45
Identity = 91/98 (92.86%), Postives = 96/98 (97.96%), Query Frame = 0


Query: 1  MSSGRPITVLNVAEKPSVAKSVATILSRNQGLRVREGRSRYNKIFEFNYAIRGQSCNMLV 60
          M+ GRPITVLNVAEKPSVAKSVATILSRNQGLRVREGRSRYNKIFEFNYAIRGQSCNMLV
Sbjct: 1  MAGGRPITVLNVAEKPSVAKSVATILSRNQGLRVREGRSRYNKIFEFNYAIRGQSCNMLV 60

Query: 61 TSVTGHLMELDFEERYRKWHSCDPVQLFHAPIRKFVPE 99
          TSVTGHLMEL+FEERYRKWHSCDPV+LF+AP+RK VPE
Sbjct: 61 TSVTGHLMELEFEERYRKWHSCDPVELFNAPVRKLVPE 98

[Close]

BLAST of HG10019912 vs. ExPASy TrEMBL
Match: A0A6J1F0T9 (DNA topoisomerase OS=Cucurbita moschata OX=3662 GN=LOC111441350 PE=3 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 2.2e-45
Identity = 91/98 (92.86%), Postives = 96/98 (97.96%), Query Frame = 0


Query: 1  MSSGRPITVLNVAEKPSVAKSVATILSRNQGLRVREGRSRYNKIFEFNYAIRGQSCNMLV 60
          M+ GRPITVLNVAEKPSVAKSVATILSRNQGLRVREGRSRYNKIFEFNYAIRGQSCNMLV
Sbjct: 1  MAGGRPITVLNVAEKPSVAKSVATILSRNQGLRVREGRSRYNKIFEFNYAIRGQSCNMLV 60

Query: 61 TSVTGHLMELDFEERYRKWHSCDPVQLFHAPIRKFVPE 99
          TSVTGHLMEL+FEERYRKWHSCDPV+LF+AP+RK VPE
Sbjct: 61 TSVTGHLMELEFEERYRKWHSCDPVELFNAPVRKLVPE 98

[Close]

BLAST of HG10019912 vs. TAIR 10
Match: AT5G63920.1 (topoisomerase 3alpha )

HSP 1 Score: 147.5 bits (371), Expect = 9.0e-36
Identity = 71/95 (74.74%), Postives = 78/95 (82.11%), Query Frame = 0


Query: 4  GRPITVLNVAEKPSVAKSVATILSRNQGLRVREGRSRYNKIFEFNYAIRGQSCNMLVTSV 63
          G P+TVLNVAEKPSVAKSVA ILSR    R REGRSRYNKIFEF+YAI GQ C ML+TSV
Sbjct: 6  GGPVTVLNVAEKPSVAKSVAGILSRGT-FRTREGRSRYNKIFEFDYAINGQPCRMLMTSV 65

Query: 64 TGHLMELDFEERYRKWHSCDPVQLFHAPIRKFVPE 99
           GHLMEL+F +RYRKWHSCDP  L+ AP+ K VPE
Sbjct: 66 IGHLMELEFADRYRKWHSCDPADLYQAPVMKHVPE 99

[Close]

BLAST of HG10019912 vs. TAIR 10
Match: AT2G32000.1 (DNA topoisomerase, type IA, core )

HSP 1 Score: 73.2 bits (178), Expect = 2.1e-13
Identity = 39/88 (44.32%), Postives = 55/88 (62.50%), Query Frame = 0


Query: 7  ITVLNVAEKPSVAKSVATILSRNQGLRVREGRSRYNKIFEFNYAIRGQSCNMLVTSVTGH 66
          + VL VAEKPS+A S+A++LS  Q +  R G +   ++ EF+   RG   +  VTSV GH
Sbjct: 5  LRVLMVAEKPSIALSIASVLSHGQ-MSTRRGST---EVHEFDGMFRGFKAHYRVTSVIGH 64

Query: 67 LMELDFEERYRKWHSCDPVQLFHAPIRK 95
          +  +DF E+Y+ W + DP  LF API K
Sbjct: 65 VFSVDFPEKYQNWATIDPQDLFDAPIIK 88

The following BLAST results are available for this feature:

BLAST of HG10019912 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038904102.1	6.9e-46	93.88	DNA topoisomerase 3-alpha isoform X2 [Benincasa hispida]	[more]
XP_038904101.1	6.9e-46	93.88	DNA topoisomerase 3-alpha isoform X1 [Benincasa hispida]	[more]
XP_022154286.1	1.5e-45	92.86	DNA topoisomerase 3-alpha [Momordica charantia]	[more]
XP_022934066.1	4.4e-45	92.86	DNA topoisomerase 3-alpha isoform X1 [Cucurbita moschata]	[more]
XP_022934067.1	4.4e-45	92.86	DNA topoisomerase 3-alpha isoform X2 [Cucurbita moschata]	[more]

BLAST of HG10019912 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
C7J0A2	7.4e-35	71.88	DNA topoisomerase 3-alpha OS=Oryza sativa subsp. japonica OX=39947 GN=TOP3A PE=3...	[more]
Q9LVP1	1.3e-34	74.74	DNA topoisomerase 3-alpha OS=Arabidopsis thaliana OX=3702 GN=TOP3A PE=1 SV=1	[more]
Q8T2T7	6.5e-23	60.00	DNA topoisomerase 3 OS=Dictyostelium discoideum OX=44689 GN=top3 PE=3 SV=1	[more]
Q13472	8.8e-20	52.22	DNA topoisomerase 3-alpha OS=Homo sapiens OX=9606 GN=TOP3A PE=1 SV=1	[more]
O70157	1.5e-19	51.11	DNA topoisomerase 3-alpha OS=Mus musculus OX=10090 GN=Top3a PE=2 SV=1	[more]

BLAST of HG10019912 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DNA0	7.4e-46	92.86	DNA topoisomerase OS=Momordica charantia OX=3673 GN=LOC111021577 PE=3 SV=1	[more]
A0A6J1IXM8	2.2e-45	92.86	DNA topoisomerase OS=Cucurbita maxima OX=3661 GN=LOC111481572 PE=3 SV=1	[more]
A0A6J1J603	2.2e-45	92.86	DNA topoisomerase OS=Cucurbita maxima OX=3661 GN=LOC111481572 PE=3 SV=1	[more]
A0A6J1F1M3	2.2e-45	92.86	DNA topoisomerase OS=Cucurbita moschata OX=3662 GN=LOC111441350 PE=3 SV=1	[more]
A0A6J1F0T9	2.2e-45	92.86	DNA topoisomerase OS=Cucurbita moschata OX=3662 GN=LOC111441350 PE=3 SV=1	[more]

BLAST of HG10019912 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G63920.1	9.0e-36	74.74	topoisomerase 3alpha	[more]
AT2G32000.1	2.1e-13	44.32	DNA topoisomerase, type IA, core	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.40.50.140		coord: 2..107 e-value: 2.1E-29 score: 104.8
None	No IPR available	PANTHER	PTHR11390:SF21	DNA TOPOISOMERASE 3-ALPHA	coord: 8..98
IPR000380	DNA topoisomerase, type IA	PANTHER	PTHR11390	PROKARYOTIC DNA TOPOISOMERASE	coord: 8..98
IPR023405	DNA topoisomerase, type IA, core domain	SUPERFAMILY	56712	Prokaryotic type I DNA topoisomerase	coord: 8..103

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10019912.1	HG10019912.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006265	DNA topological change
cellular_component	GO:0005694	chromosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003917	DNA topoisomerase type I (single strand cut, ATP-independent) activity
molecular_function	GO:0008270	zinc ion binding