HG10019891 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10019891
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptionregulation of nuclear pre-mRNA domain-containing protein 1B-like
LocationChr04: 26557454 .. 26564151 (-)
RNA-Seq ExpressionHG10019891
SyntenyHG10019891
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAAAGATAGACAAAAGTCTTCAATCTTGGCAAAACGACTTCTATCTAAGGGAGATAGGCTTACCTTTAAAATTGCCACCCAAACTAACCTTCCCGCCTACATTTACCCCCTTCTTTTTGCCTTCCAAAGTTGCTGCTCTCTTTGAAAGCTCTTACGAAATTTCCTACGGTGTGGGGTGTGGGAATAGGGGTAAGGAGCTCTCACATCTCCTAAAGTGGAACTAGGTAAAAAAAAAAAAAAAACTTAATTGGAAGTGGGGGCTTGGCATTATTTTGATTTGCAGCTTTAGAACAAAGCTCTCTTAACCAAATGGATTTGGAGCTTCTCATGTGAAAAAGATGCGTCATGGAGAGAAGTGTTCAATGCTAAATTTGGTACCACCTCTTTCAATTTGAAATTGGGAAACCTTTTTAAGGTATCCCCCAAAAGTCCATGGAAGTCTATCCTTAAGCATTGAGATCTTTTTTAGGAGAACATTGTGATCTCCAAAGCTTTTACTTTAGGAAGATAATTGGGTAGGAGACAACCCTTTAGTTGTTCTTTATCTAGAATTATATGTAGTCTCCTTAAAGAAAGAATAAACTATTGTAGAGTGTTGGGATAATGTTAATCAGACATGGAATTGTAGAGTGTTGGGATAATATTAATCAGTCATGGAATTGTAGAGTGTTGGGATAATGTTAATCAGACATGAATCTAGGCCTTAGAAGAGGGATTTTTGACTGGGAACTGCAGCATTGAGTGAGCTTATCAAATTGGGCCCTCTCCACCTCGATGTGTAGCATATGTTTGGGGAGTGAAGAGTCCCTTGACCACCTCTTTTCAAGCGCTTTGGAAATCAAAGAGTCCAAAAAGGATTAATATTATTGTTTGTGCGTTATTGTTTGGTTCCCTCAATTGCTCATCTATTTTACAACATAAGCTACAGTCACACTATCTTTCCCCATCTATTTAACCTCTTTGCTTAGCACAGTGATGATTTGCAACACCTACTTTTTGATTGCTCCTTCTCTAGTTGCTGTTGGCAAAAATTACTCTCGTCCTTCAATCTTCATTGGGTTTTCAGCAACACAGTCCAGTATAATGTGCTTCAGATCTTGGTGGACCCTTGGTTATCTTCCAAAGCGCATCTATTATGGTCTAATGTCGTTAAGGCGTTGATTTCCGAAATATGGTTTGAACGAAATCAAAGGGTTTTTCATGAAAAAGCGACAACTTGGTCAGATCGTTATGGATCCATTCGACTCCTAGCTTCTATGTGGTGTTCTCTCTCCAAGGCCTTTGAGGACTACTCCATCGAGGATATTTGCCTAATTGGAATGCTTTTATTGTTTTACCTTAATTTTGTTTTATGTTTTGAGAGACTCTTGTCGTGGATTTGGTTGTATTTCTCTTTGATGTATTCCTTTTTGTTGTACTTCTCTCAATTGGGATGTGATGAGGGCGCTAGGGGTGTGTCAACCTAGTTGAGATAGCTGGGTGTGCCTATCGATCCCCGTTCTCAAAGTTGCAACTAGCTCTTATGTATCTCTGTACTTTGAGCATTTGTCTCTTTTCTTTTCATTACATCAATGAATGGCTTTGTTTATGTTTTTTTTAATAAAAAAAATAGGCTTTTTAAGAAATTTGGCCTCTCGTTTTACTTCCTCTTAAGATGGAAGATTGGATGACTAAATGTTTCAGGGGGTTGAGATTTCGTGGAAAAGCTAGAATCTTTTGGTGTTATGCAACTAGAGCACTTCTTTGGTCAACTTGGAAAGAAAGGAATCAATGGATCTTTAAAGATAAATCATTTGATGTGCATTGTTTTCGGGCTAGTGTAAAATATACGTCTTCTTGGGTATGAGAAATGATAGAATCTTTAGGCGTCAGGAGAGGCTTTCAAGTAATATTTGGTCCCTTGCTAGATTCTACGTTTCTCTTTAGGCTTCTGTGACTAAGTGTTTTTGTAATTATACTCTTAGTCTTCTTTTACTTGATTGGAGCCCTTTTGTGTAGGCCGACTTCCTTTTGTGGGTTCTTTTTTTGTATGCCCATGTATTCTTTCCTTTGTTTCATAGTGAAAGTGTGGTTTTTCATCAACATATGTATATACACACACTCATGTCTCCTTGGTGATGTTCTAACCCTAAGAAATTCTTTTGTGATTATAGCCTTCTCATAAAAAAATGAGTGGTTGGTTGTTAATGCTCGATTTGGCCAAGGCTTTTGATTGTGTGGATTGGGGTTTCCTTGAAGAAGTGTTCTGGCTAAAAGGCTTTCACTATCAATGGATTCAATGGAATATGAGTTGTATTAGAAGCCCTAAATATTTAGTCTTTATCAATGGGAAACTGAGTGTCCTCATGGAAGAATGTTGGCTACACGAGGTTTAAGGCAAGGCGATCCACTTTCTCCATTCCTTTTTCTAATTGGAAGTGAGATTTTTGGTGGTTTACTCGAAGTTCATTTCAAAGGGGCTCATGAAGGATTTAGAGTTTGCAAAGACGAATTCGTGTTTTTCTCCTTCAATTTGCCGATGCGACATTATTATTTTGCTAAGATGATGATGACATGTTTGATATACTAGTCCAAACAATGGAGCTATTTGAGTGGTGCTCGAGATTGAAAATCAATTGGGAAAATGATTGTGTGTGGTATTAATATGGATGCTTCAAAAGTTAGTGTATTTGCATCATGTTTCCAGTGTAAGGTTGAAGCCTTGCCGATCATTTATTTGGGTATTCGTCTTGGTGGTCATCCAAATCAGAAACTTTTTGGCAACTGGTCATAGACAACATAAAGAAAAAACTTGATAAATGGAAACATTTTTCTTTATCGCGTGGTGATCATCTAACTCTCTGTTCCTCTTTATTATCAAGCATTTTGTCGTACTATTTGTCTCTATTTTTGATGCCTCCATCAGTTAGCCTTCACATTGATCGTCTGCTGCGTTCTTTCTCTTGGGAAGGAACTAATAGTATTAAAATAAATCACTTGGTCCGCTGGAGTCTTGTGTCAAATTCACATCTGGGTGGTGGACTTGGGTTTGGAGATTTAAAACTCAGAAGCATGGCCTTGTTAGAAAAATCGGAATGAAGATTTATGATTGAACCCCATTCTTTTTGGCAGAAAGTTATTTTCAGTATTCATTGTTCTTCAAATTTTTGTTGGATTTTGGTTCAATGAATAATTTGAATCTTAGGAGCTCTTGGTTGAATATTTCAAAGCTTTGGAAGGATTTCGATTCACTTGCTCATTTTAAATTGGGAAATGGTAGAAGAGTTCTATTTTGGATTGATATTTGGATGGGCAACTCTTATTTGAAATCTTCCTTTCCCAGGTTGTTTGCTGTATGTTCCTCTCCTACTGGGACTTTTTTCTTTCTTTCTTTCTTCTTCTTCTTCTCCTCCTTTTTTTTTACTTTTATGTTAAATTTTAAAATAATTTTTAAAATTTTTATTTTCAAAATTCTTAATTAATTAATTTATTATTACTATTATTTTTTTTTATAGATCATTGGGACAGCCAAATTGGTGCTGGGCAAATTTCTTTTCGAAGATCTTTGAAGGAGAAGAAGTATTTGACTTCGAGTCTTTGTTAGCCACTGGTTTCACGGCCTCTCTTGGTCCCAATGATGATCGCTGTGATTGGTCCCTTGAACCTTAAGGAATTTTTCAGTAAAATCTTTATCCAAACATTTGCTTCGTTACCAACGAATAAGGTGGAATTCTCAGTTCTTTAGAAGTCTAGATGTCCCAAAGGATTAATATTTTGATTTGGATTATATTGAATGGTAATGATCTTAATACCTCAAAGGTCTTGCAAAGGAAGAATCCGAAGAAATATCTCATGCCATCATTTTCCCGCCTTTGTTATTCGGCTGATGAAACTCTTCTTCCTCTCTTCTTTGATTGCCTTTATGCTAGACAAATTGGGGCTCATTTGTTTGCAATCCTCAATTCTCATTGGGTATTCTCTAATATATATATATATATTTATATTTTGAAATGGAAACAAGATTTTCATTGAATTAATGAAATGAGACTAATGCTCAATGAGAAATAGAGGAAACAAAGCATAAAACTCAAACTTGCCAATATAAAACAAGAAATATAAGACTAAACTCACTAAAATGTGGATAACATTGGACTTGAAAACAAGATTTAAAGCCCATTGAAGATTAGAAAAGTAGAAAAGCTTCCTCCAAAATTCTATTGAGAACCAACATTCAAAGAAAATATGTGGAGGGTCTTCAATATCCGCTGAACAAAGAGGACAAATTGAGGCCGAGAGTGATTAACTTGGAAGCTTCATTTTAGGAGAAACTGAGCAATTAAGCTCCCCAAGATCAAAACCCAAAAATAATGTTAACTCCTTGAACAACAAGAAATTCACATGCTTTATGGAAATGAACCTGAAGAATCCAATTATGCAAACAACAGCTCCAAATAAAAATTCCTTGATAATTCTGATCATGAACCCAATTGTAAACGCACAGCTTCATAAAAAGGCCACCGAAATGTATTCTCTAATATATTTAGGACTAATGTTCCAGTATTGCTTGCTCAGTGGTTCCCTGCTACATTCCAAAGCCAGTTTGATTTGGATAAATGCTGTCAAAGCAATTCATTCAGAATTATGGTTGGAAAGGAATCAAACACATCTTCCATGATAAATCTCTCACCTTTTAAGTGTTGAATTGGCTCGTGTAAAAGTGTCTACTTGGTGCTCTCTTTCCAAATTTTTAGTGAGATTTTCTATTTAAGATTTTTGCCTTAATTGGAATGTTTTTATCTCTCATGATTAATTATGTATTAGTAGCTCTTTATTATACTTTTCTTTTTTCTTTTTTCACCCTGTGTCAAATTTTGTATCGTTGGAGCAGTATTCTCTTTTCATGATATCAATGAAAATCTTGTTTCTTGTTTCAAAAATATTATAGCCTTCTCATGATATCTTTGGATTCTTGTTAGTTTTCCTTGGTAGTTTTCTTTCACTTCCTTGGAGTTTGTTTCCTTTGAACATGATGAAACTGTTCTTGGAGAAATCTTGGAACAAAAGTATTACATTAGAACATTTTTGTATCTTTTCATTATTTCAATGAGAAGTTTGAAAAGATATCCTCGGATTAGAAGGCTTTTTTTTTTTTTTTTTTTTTTTTTTATAGTTTTTCCAATATGAGATCCTCAACATGCTCCCTCAAGATTGGGTTCATCATTCTTGGGTTGAATATATTTTTTTGGCCTGAATATCCGTTTGAGCTTTGTGGATTATGATACCATATTAGATAAACACGATGTTCCATCTCAAAACGAATTAGCAACGAGGCAATAACTCGTCTACTTATACATATTGTGAGTTCTCCTCATTTTTCCAATGTGGGATCCTTAACACCAATGAAGTTTAATCAATTTAATAAAAAGAAAAAAGTTCAAGTGGTGGTTATTTTAAAATTGGGCCAACTGTGAGTGGCTACATTTGGCCAAAGTAAAAATCTGCAAGGTGGCTAACTCTTTGATAGCAACACAACAAGGTGGGTTTTTTTTCTTCTTTTTGTTTGTTCCAATGTTTTGAAAGGCTTAAGTGGCCTTAAGGTGTTTTTTCATGGAGGGGTGAGGCGTATGCCTTGAGACAGTATGAAGCATAAGCCTCATTTTAAATTAAAAAAACAACTATTTTAATCATAAAACATAAAACTTGATGCAGTAGGATCAGGTTAATCTTGGGTAATTCTTTGGTTAATCCTTTTTACTATCTTTTTGTGTTAATTCTCTACAAATAGAGAATCTCCCTCTCGTGTACTTCAACTTGATCAAAGTAAAGATACTTGGTTTGATTCTAGGAGAAAACTCTCCTTTTATGTCTTAGGCTACACCGAATATCGAGGGAGGTTTTTATAAAACAATCTCACGTGATCAAAGTGCCCTGTGAGGAAAGACAAATTACAGTATTTATTCTCATTGCAGATGAAGTTGTTCATGATTGGAGGAGAAGGAGAAGGGAGGGGGACTTCATTACTAAGCATGGAGGCTGATGATTTTGTGATTGCGATTTTTTTGATGTTGGCATTAAGCTTGATGATCGATTGCTTCATATTGTTGAGTGACGAGCATTTTCATTGCTCTTGTTTGGGAACTTTGGATTGAGAGTAGTTGTTGCCTTGTATTCTTTTTCTTTTTAGGCTTTAAATTTATTGGATTGTAAGGCGTTTTGGATGTGATAGTTCTTGTGTTTAGATGGAGCTTTTCTTTTTCCTGCATTCTTTTTGTGATTTTTTTTTTTGTTGGGTACATACTGAATGAGGAGTGGTTCTTATACTGTATACTCTTTGGAGAATGTTTTATACTCAAATCTATACTCTTTGTTAATTAATTTCTGTTGGTGGGTTGCAATTGTTATGAATCTGTTTATCTTTAATATCAAATTAGCTTTATCAAGATGGTGCATTTCCCACCGGAAAAAGGCCAAGCAGATTGTTGAAACATGGGATAAATTGTTCAACTCATCTCAGAAAGAGCAGCGTGTTTCATTTCTGTACTTGGCGAATGACATTTTGCAGAACAGCAGGCGCAAGGGGAGTGAATTTGTGAATGAATTCTGGAAAGTTCTTCCTGGTGCTCTCAAGTATGTCTATGATCATGGCGATGAAGGTGGAAAGAAAGCAGTTGCCAGACTTGTACGTCTTCTTTTTACTTGTGTAGAAAAAAAATGA

mRNA sequence

ATGGTAAAGATAGACAAAAGTCTTCAATCTTGGCAAAACGACTTCTATCTAAGGGAGATAGGCTTACCTTTAAAATTGCCACCCAAACTAACCTTCCCGCCTACATTTACCCCCTTCTTTTTGCCTTCCAAAGTTGCTGCTCTCTTTGAAAGCTCTTACGAAATTTCCTACGGTGTGGGGTGTGGGAATAGGGCTTTATCAAGATGGTGCATTTCCCACCGGAAAAAGGCCAAGCAGATTGTTGAAACATGGGATAAATTGTTCAACTCATCTCAGAAAGAGCAGCGTGTTTCATTTCTGTACTTGGCGAATGACATTTTGCAGAACAGCAGGCGCAAGGGGAGTGAATTTGTGAATGAATTCTGGAAAGTTCTTCCTGGTGCTCTCAAGTATGTCTATGATCATGGCGATGAAGGTGGAAAGAAAGCAGTTGCCAGACTTGTACGTCTTCTTTTTACTTGTGTAGAAAAAAAATGA

Coding sequence (CDS)

ATGGTAAAGATAGACAAAAGTCTTCAATCTTGGCAAAACGACTTCTATCTAAGGGAGATAGGCTTACCTTTAAAATTGCCACCCAAACTAACCTTCCCGCCTACATTTACCCCCTTCTTTTTGCCTTCCAAAGTTGCTGCTCTCTTTGAAAGCTCTTACGAAATTTCCTACGGTGTGGGGTGTGGGAATAGGGCTTTATCAAGATGGTGCATTTCCCACCGGAAAAAGGCCAAGCAGATTGTTGAAACATGGGATAAATTGTTCAACTCATCTCAGAAAGAGCAGCGTGTTTCATTTCTGTACTTGGCGAATGACATTTTGCAGAACAGCAGGCGCAAGGGGAGTGAATTTGTGAATGAATTCTGGAAAGTTCTTCCTGGTGCTCTCAAGTATGTCTATGATCATGGCGATGAAGGTGGAAAGAAAGCAGTTGCCAGACTTGTACGTCTTCTTTTTACTTGTGTAGAAAAAAAATGA

Protein sequence

MVKIDKSLQSWQNDFYLREIGLPLKLPPKLTFPPTFTPFFLPSKVAALFESSYEISYGVGCGNRALSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYDHGDEGGKKAVARLVRLLFTCVEKK
Homology
[Close]
BLAST of HG10019891 vs. NCBI nr
Match: XP_038904543.1 (regulation of nuclear pre-mRNA domain-containing protein 1B-like [Benincasa hispida])

HSP 1 Score: 173.3 bits (438), Expect = 1.6e-39
Identity = 82/86 (95.35%), Postives = 84/86 (97.67%), Query Frame = 0 

Query: 65  ALSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV 124
           +LSRWCISHRKKAKQIVETWDK FNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV
Sbjct: 27  SLSRWCISHRKKAKQIVETWDKSFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV 86

Query: 125 LPGALKYVYDHGDEGGKKAVARLVRL 151
           LPGALKYVYDHGDEGGKKAVARLV +
Sbjct: 87  LPGALKYVYDHGDEGGKKAVARLVNI 112

[Close]
BLAST of HG10019891 vs. NCBI nr
Match: XP_004136608.1 (regulation of nuclear pre-mRNA domain-containing protein 1B [Cucumis sativus] >XP_031739391.1 regulation of nuclear pre-mRNA domain-containing protein 1B [Cucumis sativus] >KAE8651160.1 hypothetical protein Csa_001803 [Cucumis sativus])

HSP 1 Score: 172.2 bits (435), Expect = 3.6e-39
Identity = 81/86 (94.19%), Postives = 84/86 (97.67%), Query Frame = 0 

Query: 65  ALSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV 124
           +LS+WCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV
Sbjct: 27  SLSKWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV 86

Query: 125 LPGALKYVYDHGDEGGKKAVARLVRL 151
           LPGALKYVYDHGDE GKKAVARLV +
Sbjct: 87  LPGALKYVYDHGDESGKKAVARLVNI 112

[Close]
BLAST of HG10019891 vs. NCBI nr
Match: XP_008443180.1 (PREDICTED: regulation of nuclear pre-mRNA domain-containing protein 1B-like [Cucumis melo])

HSP 1 Score: 172.2 bits (435), Expect = 3.6e-39
Identity = 81/86 (94.19%), Postives = 84/86 (97.67%), Query Frame = 0 

Query: 65  ALSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV 124
           +LS+WCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV
Sbjct: 27  SLSKWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV 86

Query: 125 LPGALKYVYDHGDEGGKKAVARLVRL 151
           LPGALKYVYDHGDE GKKAVARLV +
Sbjct: 87  LPGALKYVYDHGDESGKKAVARLVNI 112

[Close]
BLAST of HG10019891 vs. NCBI nr
Match: XP_022152017.1 (regulation of nuclear pre-mRNA domain-containing protein 1B-like [Momordica charantia] >XP_022152018.1 regulation of nuclear pre-mRNA domain-containing protein 1B-like [Momordica charantia])

HSP 1 Score: 171.4 bits (433), Expect = 6.2e-39
Identity = 81/84 (96.43%), Postives = 83/84 (98.81%), Query Frame = 0 

Query: 65  ALSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV 124
           +LSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV
Sbjct: 27  SLSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV 86

Query: 125 LPGALKYVYDHGDEGGKKAVARLV 149
           LPGALKYVYDHGD+ GKKAVARLV
Sbjct: 87  LPGALKYVYDHGDDSGKKAVARLV 110

[Close]
BLAST of HG10019891 vs. NCBI nr
Match: KAG7027736.1 (Regulation of nuclear pre-mRNA domain-containing protein 1B, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 167.9 bits (424), Expect = 6.9e-38
Identity = 80/84 (95.24%), Postives = 82/84 (97.62%), Query Frame = 0 

Query: 65  ALSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV 124
           ALSRWCISHRKKAKQIVETWDKLFNSSQK+QRVSFLYLANDILQNSRRKGSEFVNEFWKV
Sbjct: 17  ALSRWCISHRKKAKQIVETWDKLFNSSQKDQRVSFLYLANDILQNSRRKGSEFVNEFWKV 76

Query: 125 LPGALKYVYDHGDEGGKKAVARLV 149
           LP +LKYVYDHGDE GKKAVARLV
Sbjct: 77  LPVSLKYVYDHGDESGKKAVARLV 100

[Close]
BLAST of HG10019891 vs. ExPASy Swiss-Prot
Match: Q9NQG5 (Regulation of nuclear pre-mRNA domain-containing protein 1B OS=Homo sapiens OX=9606 GN=RPRD1B PE=1 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.9e-15
Identity = 44/116 (37.93%), Postives = 64/116 (55.17%), Query Frame = 0 

Query: 35  TFTPFFLPSKVAALFESSYEISYGVGCGNRALSRWCISHRKKAKQIVETWDKLFNSSQKE 94
           +F+   L  K++ L  S   +        + LS W I HRK A  IV  W +    ++  
Sbjct: 3   SFSESALEKKLSELSNSQQSV--------QTLSLWLIHHRKHAGPIVSVWHRELRKAKSN 62

Query: 95  QRVSFLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYDHGDEGGKKAVARLVRL 151
           ++++FLYLAND++QNS+RKG EF  EF  VL  A  +V    DEG KK + RL+ +
Sbjct: 63  RKLTFLYLANDVIQNSKRKGPEFTREFESVLVDAFSHVAREADEGCKKPLERLLNI 110

[Close]
BLAST of HG10019891 vs. ExPASy Swiss-Prot
Match: Q9CSU0 (Regulation of nuclear pre-mRNA domain-containing protein 1B OS=Mus musculus OX=10090 GN=Rprd1b PE=1 SV=2)

HSP 1 Score: 83.2 bits (204), Expect = 2.9e-15
Identity = 44/116 (37.93%), Postives = 64/116 (55.17%), Query Frame = 0 

Query: 35  TFTPFFLPSKVAALFESSYEISYGVGCGNRALSRWCISHRKKAKQIVETWDKLFNSSQKE 94
           +F+   L  K++ L  S   +        + LS W I HRK A  IV  W +    ++  
Sbjct: 3   SFSESALEKKLSELSNSQQSV--------QTLSLWLIHHRKHAGPIVSVWHRELRKAKSN 62

Query: 95  QRVSFLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYDHGDEGGKKAVARLVRL 151
           ++++FLYLAND++QNS+RKG EF  EF  VL  A  +V    DEG KK + RL+ +
Sbjct: 63  RKLTFLYLANDVIQNSKRKGPEFTREFESVLVDAFSHVAREADEGCKKPLERLLNI 110

[Close]
BLAST of HG10019891 vs. ExPASy Swiss-Prot
Match: Q0P5J9 (Regulation of nuclear pre-mRNA domain-containing protein 1A OS=Bos taurus OX=9913 GN=RPRD1A PE=2 SV=2)

HSP 1 Score: 79.3 bits (194), Expect = 4.2e-14
Identity = 35/87 (40.23%), Postives = 56/87 (64.37%), Query Frame = 0 

Query: 64  RALSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWK 123
           + LS W I HRK ++ IV  W++    ++  ++++FLYLAND++QNS+RKG EF  +F  
Sbjct: 24  QTLSLWLIHHRKHSRPIVTVWERELRKAKPNRKLTFLYLANDVIQNSKRKGPEFTKDFAP 83

Query: 124 VLPGALKYVYDHGDEGGKKAVARLVRL 151
           V+  A K+V    DE  KK + R++ +
Sbjct: 84  VIVEAFKHVSSETDESCKKHLGRVLSI 110

[Close]
BLAST of HG10019891 vs. ExPASy Swiss-Prot
Match: Q96P16 (Regulation of nuclear pre-mRNA domain-containing protein 1A OS=Homo sapiens OX=9606 GN=RPRD1A PE=1 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 4.2e-14
Identity = 35/87 (40.23%), Postives = 56/87 (64.37%), Query Frame = 0 

Query: 64  RALSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWK 123
           + LS W I HRK ++ IV  W++    ++  ++++FLYLAND++QNS+RKG EF  +F  
Sbjct: 24  QTLSLWLIHHRKHSRPIVTVWERELRKAKPNRKLTFLYLANDVIQNSKRKGPEFTKDFAP 83

Query: 124 VLPGALKYVYDHGDEGGKKAVARLVRL 151
           V+  A K+V    DE  KK + R++ +
Sbjct: 84  VIVEAFKHVSSETDESCKKHLGRVLSI 110

[Close]
BLAST of HG10019891 vs. ExPASy Swiss-Prot
Match: Q8VDS4 (Regulation of nuclear pre-mRNA domain-containing protein 1A OS=Mus musculus OX=10090 GN=Rprd1a PE=1 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 4.2e-14
Identity = 35/87 (40.23%), Postives = 56/87 (64.37%), Query Frame = 0 

Query: 64  RALSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWK 123
           + LS W I HRK ++ IV  W++    ++  ++++FLYLAND++QNS+RKG EF  +F  
Sbjct: 24  QTLSLWLIHHRKHSRPIVTVWERELRKAKPNRKLTFLYLANDVIQNSKRKGPEFTKDFAP 83

Query: 124 VLPGALKYVYDHGDEGGKKAVARLVRL 151
           V+  A K+V    DE  KK + R++ +
Sbjct: 84  VIVEAFKHVSSETDESCKKHLGRVLSI 110

[Close]
BLAST of HG10019891 vs. ExPASy TrEMBL
Match: A0A0A0LBI8 (CID domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G815490 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 2.4e-44
Identity = 90/94 (95.74%), Postives = 91/94 (96.81%), Query Frame = 0 

Query: 65  ALSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV 124
           ALS+WCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV
Sbjct: 11  ALSKWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV 70

Query: 125 LPGALKYVYDHGDEGGKKAVARLVRLLFTCVEKK 159
           LPGALKYVYDHGDE GKKAVARLV LLFTC EKK
Sbjct: 71  LPGALKYVYDHGDESGKKAVARLVCLLFTCAEKK 104

[Close]
BLAST of HG10019891 vs. ExPASy TrEMBL
Match: A0A1S3B7H0 (regulation of nuclear pre-mRNA domain-containing protein 1B-like OS=Cucumis melo OX=3656 GN=LOC103486842 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 1.8e-39
Identity = 81/86 (94.19%), Postives = 84/86 (97.67%), Query Frame = 0 

Query: 65  ALSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV 124
           +LS+WCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV
Sbjct: 27  SLSKWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV 86

Query: 125 LPGALKYVYDHGDEGGKKAVARLVRL 151
           LPGALKYVYDHGDE GKKAVARLV +
Sbjct: 87  LPGALKYVYDHGDESGKKAVARLVNI 112

[Close]
BLAST of HG10019891 vs. ExPASy TrEMBL
Match: A0A6J1DF20 (regulation of nuclear pre-mRNA domain-containing protein 1B-like OS=Momordica charantia OX=3673 GN=LOC111019832 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 3.0e-39
Identity = 81/84 (96.43%), Postives = 83/84 (98.81%), Query Frame = 0 

Query: 65  ALSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV 124
           +LSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV
Sbjct: 27  SLSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV 86

Query: 125 LPGALKYVYDHGDEGGKKAVARLV 149
           LPGALKYVYDHGD+ GKKAVARLV
Sbjct: 87  LPGALKYVYDHGDDSGKKAVARLV 110

[Close]
BLAST of HG10019891 vs. ExPASy TrEMBL
Match: A0A6J1I2G4 (regulation of nuclear pre-mRNA domain-containing protein 1B-like OS=Cucurbita maxima OX=3661 GN=LOC111470291 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 3.3e-38
Identity = 80/84 (95.24%), Postives = 82/84 (97.62%), Query Frame = 0 

Query: 65  ALSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV 124
           +LSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV
Sbjct: 27  SLSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV 86

Query: 125 LPGALKYVYDHGDEGGKKAVARLV 149
           LP +LKYVYDHGDE GKKAVARLV
Sbjct: 87  LPVSLKYVYDHGDESGKKAVARLV 110

[Close]
BLAST of HG10019891 vs. ExPASy TrEMBL
Match: A0A6J1J690 (regulation of nuclear pre-mRNA domain-containing protein 1A-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111481606 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 5.7e-38
Identity = 79/86 (91.86%), Postives = 82/86 (95.35%), Query Frame = 0 

Query: 65  ALSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV 124
           +LSRWCISHRKKAKQIVETWDKLFNSSQ+EQRVSFLYLANDILQNSRRKGSEFVNEFWKV
Sbjct: 27  SLSRWCISHRKKAKQIVETWDKLFNSSQQEQRVSFLYLANDILQNSRRKGSEFVNEFWKV 86

Query: 125 LPGALKYVYDHGDEGGKKAVARLVRL 151
           LPGALKYVYD GDE GKKA ARLV +
Sbjct: 87  LPGALKYVYDQGDESGKKAAARLVNI 112

[Close]
BLAST of HG10019891 vs. TAIR 10
Match: AT3G26990.1 (ENTH/VHS family protein )

HSP 1 Score: 117.9 bits (294), Expect = 7.6e-27
Identity = 59/116 (50.86%), Postives = 77/116 (66.38%), Query Frame = 0 

Query: 35  TFTPFFLPSKVAALFESSYEISYGVGCGNRALSRWCISHRKKAKQIVETWDKLFNSSQKE 94
           +F    L  K+A L  S   I          LS WCI H  KAK +VETW + F+ + +E
Sbjct: 4   SFNAQILVEKLAKLNNSQASI--------ETLSHWCIFHMNKAKHVVETWGRQFHCAPRE 63

Query: 95  QRVSFLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYDHGDEGGKKAVARLVRL 151
           QR+++LYLANDILQNSRRKGSEFV EFWKVLP AL+ + ++GD+ G+K+  RLV +
Sbjct: 64  QRLAYLYLANDILQNSRRKGSEFVGEFWKVLPDALRDMIENGDDFGRKSARRLVNI 111

[Close]
BLAST of HG10019891 vs. TAIR 10
Match: AT5G10060.1 (ENTH/VHS family protein )

HSP 1 Score: 113.2 bits (282), Expect = 1.9e-25
Identity = 57/115 (49.57%), Postives = 76/115 (66.09%), Query Frame = 0 

Query: 36  FTPFFLPSKVAALFESSYEISYGVGCGNRALSRWCISHRKKAKQIVETWDKLFNSSQKEQ 95
           F+   L  K+A L  S   I          LS WCI +R KA+ IV TW+K F+S++ +Q
Sbjct: 5   FSDQILIDKLAKLNSSQQSI--------ETLSHWCIFNRSKAELIVTTWEKQFHSTEMDQ 64

Query: 96  RVSFLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYDHGDEGGKKAVARLVRL 151
           +V  LYLANDILQNS+R+G+EFV EFW VLP ALK +   GD+ GK AVAR++++
Sbjct: 65  KVPLLYLANDILQNSKRQGNEFVQEFWNVLPKALKDIVSQGDDNGKSAVARVIKI 111

[Close]
BLAST of HG10019891 vs. TAIR 10
Match: AT5G65180.1 (ENTH/VHS family protein )

HSP 1 Score: 113.2 bits (282), Expect = 1.9e-25
Identity = 52/87 (59.77%), Postives = 68/87 (78.16%), Query Frame = 0 

Query: 64  RALSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWK 123
           + LS+WCI HR +A+ +V TW+K F+S+Q  Q+V  LYLANDILQNS+R+G+EFV EFWK
Sbjct: 25  QTLSQWCIVHRSEAELVVTTWEKQFHSTQIGQKVPLLYLANDILQNSKRQGNEFVQEFWK 84

Query: 124 VLPGALKYVYDHGDEGGKKAVARLVRL 151
           VLPGALK +   GD+ GK  V+RLV +
Sbjct: 85  VLPGALKDIVSLGDDYGKGVVSRLVNI 111

The following BLAST results are available for this feature:
BLAST of HG10019891 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038904543.11.6e-3995.35regulation of nuclear pre-mRNA domain-containing protein 1B-like [Benincasa hisp... [more]
XP_004136608.13.6e-3994.19regulation of nuclear pre-mRNA domain-containing protein 1B [Cucumis sativus] >X... [more]
XP_008443180.13.6e-3994.19PREDICTED: regulation of nuclear pre-mRNA domain-containing protein 1B-like [Cuc... [more]
XP_022152017.16.2e-3996.43regulation of nuclear pre-mRNA domain-containing protein 1B-like [Momordica char... [more]
KAG7027736.16.9e-3895.24Regulation of nuclear pre-mRNA domain-containing protein 1B, partial [Cucurbita ... [more]
BLAST of HG10019891 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9NQG52.9e-1537.93Regulation of nuclear pre-mRNA domain-containing protein 1B OS=Homo sapiens OX=9... [more]
Q9CSU02.9e-1537.93Regulation of nuclear pre-mRNA domain-containing protein 1B OS=Mus musculus OX=1... [more]
Q0P5J94.2e-1440.23Regulation of nuclear pre-mRNA domain-containing protein 1A OS=Bos taurus OX=991... [more]
Q96P164.2e-1440.23Regulation of nuclear pre-mRNA domain-containing protein 1A OS=Homo sapiens OX=9... [more]
Q8VDS44.2e-1440.23Regulation of nuclear pre-mRNA domain-containing protein 1A OS=Mus musculus OX=1... [more]
BLAST of HG10019891 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LBI82.4e-4495.74CID domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G815490 PE=4 SV... [more]
A0A1S3B7H01.8e-3994.19regulation of nuclear pre-mRNA domain-containing protein 1B-like OS=Cucumis melo... [more]
A0A6J1DF203.0e-3996.43regulation of nuclear pre-mRNA domain-containing protein 1B-like OS=Momordica ch... [more]
A0A6J1I2G43.3e-3895.24regulation of nuclear pre-mRNA domain-containing protein 1B-like OS=Cucurbita ma... [more]
A0A6J1J6905.7e-3891.86regulation of nuclear pre-mRNA domain-containing protein 1A-like isoform X1 OS=C... [more]
BLAST of HG10019891 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G26990.17.6e-2750.86ENTH/VHS family protein [more]
AT5G10060.11.9e-2549.57ENTH/VHS family protein [more]
AT5G65180.11.9e-2559.77ENTH/VHS family protein [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006569CID domainSMARTSM00582558neu5coord: 48..155
e-value: 2.4E-12
score: 57.0
IPR006569CID domainPFAMPF04818CIDcoord: 65..150
e-value: 1.1E-23
score: 83.7
IPR006569CID domainPROSITEPS51391CIDcoord: 33..158
score: 25.240095
IPR008942ENTH/VHSGENE3D1.25.40.90coord: 46..151
e-value: 4.4E-27
score: 96.6
IPR008942ENTH/VHSSUPERFAMILY48464ENTH/VHS domaincoord: 65..149
NoneNo IPR availablePANTHERPTHR12460:SF23OS01G0925000 PROTEINcoord: 65..150
NoneNo IPR availablePANTHERPTHR12460CYCLIN-DEPENDENT KINASE INHIBITOR-RELATED PROTEINcoord: 65..150
NoneNo IPR availableCDDcd16981CID_RPRD_likecoord: 66..149
e-value: 2.06952E-39
score: 127.697

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10019891.1HG10019891.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0031124 mRNA 3'-end processing
cellular_component GO:0016591 RNA polymerase II, holoenzyme
molecular_function GO:0000993 RNA polymerase II complex binding