HG10019890 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10019890
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptionferredoxin-thioredoxin reductase, variable chain
LocationChr04: 26553589 .. 26553972 (+)
RNA-Seq ExpressionHG10019890
SyntenyHG10019890
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCAGTTGCTCGTCTTGCATGTTCTATGACAACATTCTCAAATTGTCCTTTTCCTTGTCTGTTTATTCTCTATCATTAGTTGTTGTTAATCCTTTCGACTACTCTACTAGAAGAGGGAGAAGATTGTTTAGCGAGGTTACAGTTAGATCAAATTTCAGAACTTCGTCTTCAGGTACTGTCGTTTCGATGGCGGCGACACCATTGTCGAAGGAAGAGACTAATGAAGCAGCTACTAGAATTGGCGCCAAAGTTAAGGTTAAGGTGCCTTTGAAGGTGTATCCTATACCGAAGTTACTGGAGGAAAATCTTGAGGGGATGGGTGTTGAAGGACTATGTACAAGTTTGAAAAGGGAAGCATGTATCTGCCAATCTTCCATATAA

mRNA sequence

ATGGGCAGTTGCTCGTCTTGCATGTTCTATGACAACATTCTCAAATTGTCCTTTTCCTTGTCTGTTTATTCTCTATCATTAGTTGTTGTTAATCCTTTCGACTACTCTACTAGAAGAGGGAGAAGATTGTTTAGCGAGGTTACAGTTAGATCAAATTTCAGAACTTCGTCTTCAGGTACTGTCGTTTCGATGGCGGCGACACCATTGTCGAAGGAAGAGACTAATGAAGCAGCTACTAGAATTGGCGCCAAAGTTAAGGTTAAGGTGCCTTTGAAGGTGTATCCTATACCGAAGTTACTGGAGGAAAATCTTGAGGGGATGGGTGTTGAAGGACTATGTACAAGTTTGAAAAGGGAAGCATGTATCTGCCAATCTTCCATATAA

Coding sequence (CDS)

ATGGGCAGTTGCTCGTCTTGCATGTTCTATGACAACATTCTCAAATTGTCCTTTTCCTTGTCTGTTTATTCTCTATCATTAGTTGTTGTTAATCCTTTCGACTACTCTACTAGAAGAGGGAGAAGATTGTTTAGCGAGGTTACAGTTAGATCAAATTTCAGAACTTCGTCTTCAGGTACTGTCGTTTCGATGGCGGCGACACCATTGTCGAAGGAAGAGACTAATGAAGCAGCTACTAGAATTGGCGCCAAAGTTAAGGTTAAGGTGCCTTTGAAGGTGTATCCTATACCGAAGTTACTGGAGGAAAATCTTGAGGGGATGGGTGTTGAAGGACTATGTACAAGTTTGAAAAGGGAAGCATGTATCTGCCAATCTTCCATATAA

Protein sequence

MGSCSSCMFYDNILKLSFSLSVYSLSLVVVNPFDYSTRRGRRLFSEVTVRSNFRTSSSGTVVSMAATPLSKEETNEAATRIGAKVKVKVPLKVYPIPKLLEENLEGMGVEGLCTSLKREACICQSSI
Homology
[Close]
BLAST of HG10019890 vs. NCBI nr
Match: KAA0034101.1 (sphingoid long-chain bases kinase 1 [Cucumis melo var. makuwa] >TYK15819.1 sphingoid long-chain bases kinase 1 [Cucumis melo var. makuwa])

HSP 1 Score: 114.4 bits (285), Expect = 7.3e-22
Identity = 69/106 (65.09%), Postives = 82/106 (77.36%), Query Frame = 0 

Query: 3   SCSSCMFYDNILKLSFSLSVYSLSLVVVNPFDYSTRRGRRLFSEVTVRSNFRTSSSGTVV 62
           +CS  +F  + ++ SFS SV SLS VVVNPF+ S RRGRRLFSEV+VRS+  TSSS T V
Sbjct: 807 ACSMTVFSTSDVRSSFSSSVCSLSSVVVNPFNCSIRRGRRLFSEVSVRSDSGTSSSATAV 866

Query: 63  SMAATPLSKEETNE-AATRIGAKVKVKVPLKVYPIPKLLEENLEGM 108
           S A T LS+EET+E AA RIGA+V+VKVPLKVY + KL E NLEGM
Sbjct: 867 SAATTSLSEEETDEAAAARIGARVRVKVPLKVYHVAKLPEANLEGM 912

[Close]
BLAST of HG10019890 vs. NCBI nr
Match: XP_008445916.1 (PREDICTED: ferredoxin-thioredoxin reductase, variable chain [Cucumis melo])

HSP 1 Score: 114.4 bits (285), Expect = 7.3e-22
Identity = 69/106 (65.09%), Postives = 82/106 (77.36%), Query Frame = 0 

Query: 3   SCSSCMFYDNILKLSFSLSVYSLSLVVVNPFDYSTRRGRRLFSEVTVRSNFRTSSSGTVV 62
           +CS  +F  + ++ SFS SV SLS VVVNPF+ S RRGRRLFSEV+VRS+  TSSS T V
Sbjct: 26  ACSMTVFSTSDVRSSFSSSVCSLSSVVVNPFNCSIRRGRRLFSEVSVRSDSGTSSSATAV 85

Query: 63  SMAATPLSKEETNE-AATRIGAKVKVKVPLKVYPIPKLLEENLEGM 108
           S A T LS+EET+E AA RIGA+V+VKVPLKVY + KL E NLEGM
Sbjct: 86  SAATTSLSEEETDEAAAARIGARVRVKVPLKVYHVAKLPEANLEGM 131

[Close]
BLAST of HG10019890 vs. NCBI nr
Match: XP_023523040.1 (ferredoxin-thioredoxin reductase, variable chain-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 112.5 bits (280), Expect = 2.8e-21
Identity = 70/107 (65.42%), Postives = 82/107 (76.64%), Query Frame = 0 

Query: 3   SCSSCMFYDNI-LKLSFSLSVYSLSLVVVNPFDYSTRRGRRLFSEVTVRSNFRTSSSGTV 62
           +CS  M   ++ +K S+S SV SLS VV NPF+Y  RRGRR+ SEVTV+S+ R SSS TV
Sbjct: 26  ACSMTMVSTSVDVKSSYSSSVSSLSSVVANPFNYLIRRGRRVCSEVTVKSDSRGSSSATV 85

Query: 63  VSMAATPLSKEETNE-AATRIGAKVKVKVPLKVYPIPKLLEENLEGM 108
           VS AAT LS+EET E AATRIGAKV+VKVPLKVY + KL E NLEGM
Sbjct: 86  VSAAATSLSEEETGEAAATRIGAKVRVKVPLKVYHVAKLPEANLEGM 132

[Close]
BLAST of HG10019890 vs. NCBI nr
Match: XP_004147092.1 (ferredoxin-thioredoxin reductase, variable chain [Cucumis sativus] >KGN51581.1 hypothetical protein Csa_008440 [Cucumis sativus])

HSP 1 Score: 111.3 bits (277), Expect = 6.1e-21
Identity = 68/106 (64.15%), Postives = 80/106 (75.47%), Query Frame = 0 

Query: 3   SCSSCMFYDNILKLSFSLSVYSLSLVVVNPFDYSTRRGRRLFSEVTVRSNFRTSSSGTVV 62
           +CS  +F    +K SFS SV SLS +VVNPF+ S RRGRRLFSEV VRS+  TSSS T V
Sbjct: 26  ACSMTVFSTADVKSSFSSSVCSLSSLVVNPFNCSIRRGRRLFSEVPVRSDSGTSSSATAV 85

Query: 63  SMAATPLSKEETNE-AATRIGAKVKVKVPLKVYPIPKLLEENLEGM 108
           S A T LS+EET+E AA RIGA+V+VKVPLKVY + KL + NLEGM
Sbjct: 86  SAATTSLSEEETDEAAAARIGARVRVKVPLKVYHVAKLPDANLEGM 131

[Close]
BLAST of HG10019890 vs. NCBI nr
Match: XP_038893043.1 (ferredoxin-thioredoxin reductase, variable chain-like [Benincasa hispida])

HSP 1 Score: 109.8 bits (273), Expect = 1.8e-20
Identity = 68/106 (64.15%), Postives = 79/106 (74.53%), Query Frame = 0 

Query: 3   SCSSCMFYDNILKLSFSLSVYSLSLVVVNPFDYSTRRGRRLFSEVTVRSNFRTSSSGTVV 62
           +CS  +F    +K S+S SV SLS VVVNPF+ S RRGRRLFSEV VRS+  TS S T V
Sbjct: 26  ACSMTVFSCADVKSSYSSSVCSLSSVVVNPFNCSIRRGRRLFSEVPVRSDSGTSPSATAV 85

Query: 63  SMAATPLSKEETNE-AATRIGAKVKVKVPLKVYPIPKLLEENLEGM 108
           S A T LS+EET+E AA RIGA+V+VKVPLKVY + KL E NLEGM
Sbjct: 86  SAATTSLSEEETDEAAAARIGARVRVKVPLKVYHVAKLPEANLEGM 131

[Close]
BLAST of HG10019890 vs. ExPASy TrEMBL
Match: A0A5D3D039 (Sphingoid long-chain bases kinase 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G003240 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 3.5e-22
Identity = 69/106 (65.09%), Postives = 82/106 (77.36%), Query Frame = 0 

Query: 3   SCSSCMFYDNILKLSFSLSVYSLSLVVVNPFDYSTRRGRRLFSEVTVRSNFRTSSSGTVV 62
           +CS  +F  + ++ SFS SV SLS VVVNPF+ S RRGRRLFSEV+VRS+  TSSS T V
Sbjct: 807 ACSMTVFSTSDVRSSFSSSVCSLSSVVVNPFNCSIRRGRRLFSEVSVRSDSGTSSSATAV 866

Query: 63  SMAATPLSKEETNE-AATRIGAKVKVKVPLKVYPIPKLLEENLEGM 108
           S A T LS+EET+E AA RIGA+V+VKVPLKVY + KL E NLEGM
Sbjct: 867 SAATTSLSEEETDEAAAARIGARVRVKVPLKVYHVAKLPEANLEGM 912

[Close]
BLAST of HG10019890 vs. ExPASy TrEMBL
Match: A0A1S3BEI2 (ferredoxin-thioredoxin reductase, variable chain OS=Cucumis melo OX=3656 GN=LOC103488798 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 3.5e-22
Identity = 69/106 (65.09%), Postives = 82/106 (77.36%), Query Frame = 0 

Query: 3   SCSSCMFYDNILKLSFSLSVYSLSLVVVNPFDYSTRRGRRLFSEVTVRSNFRTSSSGTVV 62
           +CS  +F  + ++ SFS SV SLS VVVNPF+ S RRGRRLFSEV+VRS+  TSSS T V
Sbjct: 26  ACSMTVFSTSDVRSSFSSSVCSLSSVVVNPFNCSIRRGRRLFSEVSVRSDSGTSSSATAV 85

Query: 63  SMAATPLSKEETNE-AATRIGAKVKVKVPLKVYPIPKLLEENLEGM 108
           S A T LS+EET+E AA RIGA+V+VKVPLKVY + KL E NLEGM
Sbjct: 86  SAATTSLSEEETDEAAAARIGARVRVKVPLKVYHVAKLPEANLEGM 131

[Close]
BLAST of HG10019890 vs. ExPASy TrEMBL
Match: A0A0A0KV36 (FeThRed_A domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G580660 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 3.0e-21
Identity = 68/106 (64.15%), Postives = 80/106 (75.47%), Query Frame = 0 

Query: 3   SCSSCMFYDNILKLSFSLSVYSLSLVVVNPFDYSTRRGRRLFSEVTVRSNFRTSSSGTVV 62
           +CS  +F    +K SFS SV SLS +VVNPF+ S RRGRRLFSEV VRS+  TSSS T V
Sbjct: 26  ACSMTVFSTADVKSSFSSSVCSLSSLVVNPFNCSIRRGRRLFSEVPVRSDSGTSSSATAV 85

Query: 63  SMAATPLSKEETNE-AATRIGAKVKVKVPLKVYPIPKLLEENLEGM 108
           S A T LS+EET+E AA RIGA+V+VKVPLKVY + KL + NLEGM
Sbjct: 86  SAATTSLSEEETDEAAAARIGARVRVKVPLKVYHVAKLPDANLEGM 131

[Close]
BLAST of HG10019890 vs. ExPASy TrEMBL
Match: A0A6J1G052 (ferredoxin-thioredoxin reductase, variable chain-like OS=Cucurbita moschata OX=3662 GN=LOC111449500 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.9e-20
Identity = 66/95 (69.47%), Postives = 75/95 (78.95%), Query Frame = 0 

Query: 14  LKLSFSLSVYSLSLVVVNPFDYSTRRGRRLFSEVTVRSNFRTSSSGTVVSMAATPLSKEE 73
           +K S+S SV SLS VV NPF+   RRGRR+ SEVTV+S+ R SSS TVVS AAT LS+EE
Sbjct: 38  VKSSYSSSVSSLSSVVANPFNCLIRRGRRICSEVTVKSDSRGSSSATVVSAAATSLSEEE 97

Query: 74  TNE-AATRIGAKVKVKVPLKVYPIPKLLEENLEGM 108
           T E AATRIGAKV+VKVPLKVY + KL E NLEGM
Sbjct: 98  TGEAAATRIGAKVRVKVPLKVYHVAKLPEANLEGM 132

[Close]
BLAST of HG10019890 vs. ExPASy TrEMBL
Match: A0A6J1HQV7 (ferredoxin-thioredoxin reductase, variable chain-like OS=Cucurbita maxima OX=3661 GN=LOC111466537 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 2.1e-19
Identity = 67/106 (63.21%), Postives = 78/106 (73.58%), Query Frame = 0 

Query: 3   SCSSCMFYDNILKLSFSLSVYSLSLVVVNPFDYSTRRGRRLFSEVTVRSNFRTSSSGTVV 62
           +CS  +     +K S+S SV SLS VV NPF+    RGRR+ SEVTV+S+ R SSS TVV
Sbjct: 26  TCSLTVATSVDVKSSYSSSVSSLSSVVANPFNCLIGRGRRVCSEVTVKSDSRGSSSATVV 85

Query: 63  SMAATPLSKEETNE-AATRIGAKVKVKVPLKVYPIPKLLEENLEGM 108
           S AAT LS+EET E AATRIGAKV+VKVPLKVY + KL E NLEGM
Sbjct: 86  SAAATSLSEEETGEAAATRIGAKVRVKVPLKVYHVAKLPEANLEGM 131

[Close]
BLAST of HG10019890 vs. TAIR 10
Match: AT5G08410.1 (ferredoxin/thioredoxin reductase subunit A (variable subunit) 2 )

HSP 1 Score: 41.6 bits (96), Expect = 5.6e-04
Identity = 38/108 (35.19%), Postives = 56/108 (51.85%), Query Frame = 0 

Query: 16  LSFSLSVYSLSLVVVNPFDYSTRRGR--------RLFSEVTVRSNFRTSSSGTVVSMA-- 75
           LS   S+ S S  +  P   ST  GR        R   + T+R +    S+ +V + A  
Sbjct: 29  LSGRKSINSSSSSIFVPISLSTSYGRSKCAFSISRKNPKSTIRCDIAVKSAASVDADADL 88

Query: 76  --ATPLSKEETNEAATRIGAKVKVKVPLKVYPIPKLLEENLEGMGVEG 112
             +T L  EE  +A  +IGA+V+V VPLKVY + ++ E  +E MG+EG
Sbjct: 89  SSSTSLETEEDEKAKEKIGARVRVTVPLKVYHVVRVPE--VELMGMEG 134

The following BLAST results are available for this feature:
BLAST of HG10019890 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0034101.17.3e-2265.09sphingoid long-chain bases kinase 1 [Cucumis melo var. makuwa] >TYK15819.1 sphin... [more]
XP_008445916.17.3e-2265.09PREDICTED: ferredoxin-thioredoxin reductase, variable chain [Cucumis melo][more]
XP_023523040.12.8e-2165.42ferredoxin-thioredoxin reductase, variable chain-like [Cucurbita pepo subsp. pep... [more]
XP_004147092.16.1e-2164.15ferredoxin-thioredoxin reductase, variable chain [Cucumis sativus] >KGN51581.1 h... [more]
XP_038893043.11.8e-2064.15ferredoxin-thioredoxin reductase, variable chain-like [Benincasa hispida][more]
BLAST of HG10019890 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10019890 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3D0393.5e-2265.09Sphingoid long-chain bases kinase 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
A0A1S3BEI23.5e-2265.09ferredoxin-thioredoxin reductase, variable chain OS=Cucumis melo OX=3656 GN=LOC1... [more]
A0A0A0KV363.0e-2164.15FeThRed_A domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G580660 P... [more]
A0A6J1G0521.9e-2069.47ferredoxin-thioredoxin reductase, variable chain-like OS=Cucurbita moschata OX=3... [more]
A0A6J1HQV72.1e-1963.21ferredoxin-thioredoxin reductase, variable chain-like OS=Cucurbita maxima OX=366... [more]
BLAST of HG10019890 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G08410.15.6e-0435.19ferredoxin/thioredoxin reductase subunit A (variable subunit) 2 [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10019890.1HG10019890.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015979 photosynthesis
molecular_function GO:0016301 kinase activity